Query gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 00:54:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781084.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mxt_A Pantothenate synthetase 9.7 78 0.0033 13.9 0.9 30 1-30 58-104 (285)
2 1iho_A Pantoate--beta-alanine 8.1 66 0.0028 14.3 -0.0 32 1-32 56-104 (283)
3 1v8f_A Pantoate-beta-alanine l 7.4 1.1E+02 0.0048 13.1 0.9 31 1-31 51-98 (276)
4 3cov_A Pantothenate synthetase 6.4 1.3E+02 0.0053 12.9 0.8 14 1-14 68-81 (301)
5 3ag6_A Pantothenate synthetase 6.4 1.4E+02 0.006 12.6 1.1 30 1-30 57-103 (283)
6 3guz_A Pantothenate synthetase 6.3 90 0.0038 13.7 -0.0 14 1-14 56-69 (176)
7 3n8h_A Pantothenate synthetase 6.3 96 0.004 13.5 0.1 14 1-14 58-71 (264)
8 2ejc_A Pantoate--beta-alanine 5.6 1.6E+02 0.0068 12.4 0.9 13 1-13 56-68 (280)
9 3inn_A Pantothenate synthetase 5.4 1.8E+02 0.0075 12.2 1.1 31 1-31 77-124 (314)
10 1ak6_A Destrin; actin depolyme 5.0 1.9E+02 0.008 12.0 2.0 26 1-26 2-27 (174)
No 1
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp}
Probab=9.71 E-value=78 Score=13.95 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCE-------------EEEECHHHH----HHHHHCCH
Q ss_conf 9887544887522-------------563006688----99872661
Q gi|254781084|r 1 MVSPPQFNSNSDM-------------LVQADVDRA----FSEMYGNS 30 (59)
Q Consensus 1 mvsppqfnsnsdm-------------lvqadvdra----fsemygns 30 (59)
.|.|.|||.+.|. |-.+.||-- ..|||...
T Consensus 58 FVNP~QF~~~eD~~~YPr~~~~D~~~l~~~gvd~vF~P~~~emyp~~ 104 (285)
T 3mxt_A 58 FVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKN 104 (285)
T ss_dssp CCCGGGCCTTSCTTTSCCCHHHHHHHHHHTTCSEEECCCHHHHSCTT
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHCCCCC
T ss_conf 83611278765234699997899999986799899838702125667
No 2
>1iho_A Pantoate--beta-alanine ligase; rossman fold, dimer, APO, high, KSMKS, flexible domains, multidomain; 1.70A {Escherichia coli} SCOP: c.26.1.4 PDB: 3mue_A
Probab=8.06 E-value=66 Score=14.33 Aligned_cols=32 Identities=38% Similarity=0.667 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCE-------------EEEECHHHHH----HHHHCCHHH
Q ss_conf 9887544887522-------------5630066889----987266145
Q gi|254781084|r 1 MVSPPQFNSNSDM-------------LVQADVDRAF----SEMYGNSEQ 32 (59)
Q Consensus 1 mvsppqfnsnsdm-------------lvqadvdraf----semygnseq 32 (59)
.|-|-|||.+.|. |-.+.||-.| .|||.+..+
T Consensus 56 FVNP~QF~~~eD~~~YPr~~e~D~~ll~~~gvD~vF~P~~~eiyp~~~~ 104 (283)
T 1iho_A 56 FVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTE 104 (283)
T ss_dssp CCCGGGCSSHHHHHHSCCCHHHHHHHHHHTTCSEEECCCHHHHCTTCST
T ss_pred ECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 5375347871443228998688889998639838984882024786556
No 3
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=7.35 E-value=1.1e+02 Score=13.15 Aligned_cols=31 Identities=42% Similarity=0.612 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCE-------------EEEECHHHHH----HHHHCCHH
Q ss_conf 9887544887522-------------5630066889----98726614
Q gi|254781084|r 1 MVSPPQFNSNSDM-------------LVQADVDRAF----SEMYGNSE 31 (59)
Q Consensus 1 mvsppqfnsnsdm-------------lvqadvdraf----semygnse 31 (59)
.|-|-|||.+.|. |-.+.||-.| .|||.+..
T Consensus 51 FVNP~QF~~~eD~~~YPr~l~~D~~ll~~~gvD~vF~P~~~e~Yp~~~ 98 (276)
T 1v8f_A 51 FVNPLQFGPGEDYHRYPRDLERDRALLQEAGVDLLFAPGVEEMYPEGF 98 (276)
T ss_dssp CCCGGGCCTTSSTTTSCCCHHHHHHHHHHTTCSEEECCCHHHHSCTTC
T ss_pred EECCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf 777766898424765899827659999858997998788545567677
No 4
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=6.44 E-value=1.3e+02 Score=12.92 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCEE
Q ss_conf 98875448875225
Q gi|254781084|r 1 MVSPPQFNSNSDML 14 (59)
Q Consensus 1 mvsppqfnsnsdml 14 (59)
.|-|-|||.+.|.-
T Consensus 68 FVNP~QF~~~eD~~ 81 (301)
T 3cov_A 68 FVNPMQFGAGGDLD 81 (301)
T ss_dssp CCCGGGCCSSSHHH
T ss_pred ECCCCCCCCCHHHC
T ss_conf 62753478712201
No 5
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=6.43 E-value=1.4e+02 Score=12.62 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCEE-------------EEECHHHH----HHHHHCCH
Q ss_conf 98875448875225-------------63006688----99872661
Q gi|254781084|r 1 MVSPPQFNSNSDML-------------VQADVDRA----FSEMYGNS 30 (59)
Q Consensus 1 mvsppqfnsnsdml-------------vqadvdra----fsemygns 30 (59)
.|.|-|||.+.|.- -.+.||-. ..|||.+.
T Consensus 57 FVNP~QF~~~eD~~~YPr~le~D~~~l~~~gvd~vF~P~~~e~yp~~ 103 (283)
T 3ag6_A 57 FVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGE 103 (283)
T ss_dssp CCCGGGCCTTSSTTTSCCCHHHHHHHHHHHTCSEEECCCHHHHSCSS
T ss_pred EECHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 87702248754310069998999999984799899847643467765
No 6
>3guz_A Pantothenate synthetase; pantothenate biosynthesis, substrate binding, competitive inhibition, rossmann fold; HET: PAF; 1.67A {Escherichia coli}
Probab=6.30 E-value=90 Score=13.66 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCEE
Q ss_conf 98875448875225
Q gi|254781084|r 1 MVSPPQFNSNSDML 14 (59)
Q Consensus 1 mvsppqfnsnsdml 14 (59)
.|.|-|||.+.|.-
T Consensus 56 FVNP~QF~~~eD~~ 69 (176)
T 3guz_A 56 FVNPMQFDRPEDLA 69 (176)
T ss_dssp CCCGGGCSCHHHHH
T ss_pred ECCCHHCCCCCCCC
T ss_conf 03703246666665
No 7
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp}
Probab=6.28 E-value=96 Score=13.50 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCEE
Q ss_conf 98875448875225
Q gi|254781084|r 1 MVSPPQFNSNSDML 14 (59)
Q Consensus 1 mvsppqfnsnsdml 14 (59)
.|-|-|||.+.|.-
T Consensus 58 FVNP~QF~~~eD~~ 71 (264)
T 3n8h_A 58 FVNPTQFNNPNDYQ 71 (264)
T ss_dssp CCCGGGCSCHHHHH
T ss_pred ECCCCCCCCHHHHH
T ss_conf 51711268756677
No 8
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=5.59 E-value=1.6e+02 Score=12.38 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCE
Q ss_conf 9887544887522
Q gi|254781084|r 1 MVSPPQFNSNSDM 13 (59)
Q Consensus 1 mvsppqfnsnsdm 13 (59)
.|-|-|||.+.|.
T Consensus 56 FVNP~QF~~~eD~ 68 (280)
T 2ejc_A 56 FVNPTQFGPNEDY 68 (280)
T ss_dssp CCCGGGCCTTSCG
T ss_pred ECCCCCCCCCCCC
T ss_conf 3575435676311
No 9
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=5.45 E-value=1.8e+02 Score=12.17 Aligned_cols=31 Identities=45% Similarity=0.713 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCE-------------EEEECHHHHH----HHHHCCHH
Q ss_conf 9887544887522-------------5630066889----98726614
Q gi|254781084|r 1 MVSPPQFNSNSDM-------------LVQADVDRAF----SEMYGNSE 31 (59)
Q Consensus 1 mvsppqfnsnsdm-------------lvqadvdraf----semygnse 31 (59)
.|-|-|||.+.|. |-.+.||-.| .|||.+..
T Consensus 77 FVNP~QF~~~eD~~~YPr~le~D~~~l~~~gvD~vF~P~~~emYp~~~ 124 (314)
T 3inn_A 77 FVNPLQFGANEDLGRYPRDLERDAGLLHDAQVDYLFAPTVSDMYPRPM 124 (314)
T ss_dssp CCCGGGSCTTSSTTTCCCCHHHHHHHHHHTTCSEEECCCHHHHCSSCC
T ss_pred EECCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 777766788730745899867858999866973998345333477776
No 10
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A
Probab=5.03 E-value=1.9e+02 Score=12.02 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCEEEEECHHHHHHHH
Q ss_conf 98875448875225630066889987
Q gi|254781084|r 1 MVSPPQFNSNSDMLVQADVDRAFSEM 26 (59)
Q Consensus 1 mvsppqfnsnsdmlvqadvdrafsem 26 (59)
|+.+-+-+|-|.+-+..++-.+|.+|
T Consensus 2 ~~~~~~~~s~SGI~v~de~~~af~el 27 (174)
T 1ak6_A 2 MITPSSGNSASGVQVADEVCRIFYDM 27 (174)
T ss_dssp CCCCCCSTTTTCCCCCSHHHHHHHHT
T ss_pred CCCCCCCCCCCCCEECHHHHHHHHHH
T ss_conf 02234677878858799999999998
Done!