BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781084|ref|YP_003065497.1| hypothetical protein
CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040761|gb|ACT57557.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 59

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59
          MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS
Sbjct: 1  MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59


>gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 597

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 1   MVSPPQFNSNSDMLVQAD-VDRAFSEMYGNSE 31
           ++S P+   N+D+L +AD +DRA+   YGN E
Sbjct: 405 LISDPELAPNADLLTRADGIDRAYVNQYGNPE 436


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040761|gb|ACT57557.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 59

 Score = 77.7 bits (189), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59
          MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS
Sbjct: 1  MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.299    0.113    0.291 

Lambda     K      H
   0.267   0.0353    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 818,717,294
Number of Sequences: 14124377
Number of extensions: 17253090
Number of successful extensions: 47917
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47915
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 4,842,793,630
effective HSP length: 32
effective length of query: 27
effective length of database: 4,390,813,566
effective search space: 118551966282
effective search space used: 118551966282
T: 11
A: 40
X1: 16 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 75 (33.7 bits)