HHsearch alignment for GI: 254781085 and conserved domain: COG4046
>COG4046 Uncharacterized protein conserved in archaea [Function unknown].
Probab=91.15 E-value=0.77 Score=23.47 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----
Q ss_conf 899999999999999999962288-9999999999999999999999999999999999999-9999999999999----
Q gi|254781085|r 5 ETFLVFMSLIIFLVIVVYLRIPSI-LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH-SKVEEETREIILA---- 78 (173)
Q Consensus 5 ~tfw~~i~f~il~~il~~~~~~~~-i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l-~~a~~ea~~i~~~---- 78 (173)
T Consensus 9 ~p~~il~~~~i~~vllfil~~~g~n~~~qv~lf~r~Ieg~l~~le~~~~~a~~~~~~~~~~~~~e~es~l~r~~effVI~ 88 (368)
T COG4046 9 SPFWILDILGIAFVLLFILLLPGMNARVQVSLFSRYIEGALAELEKMENDAMKKVVELAVPRRDEAESTLERYAEFFVIP 88 (368)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECC
T ss_conf 70899999999999999999647661674134787788899999998889999999985122222577999987634228
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------9999999999999999999999999
Q gi|254781085|r 79 --------AKHRAKILAEEGCQNIEQISALYLK 103 (173)
Q Consensus 79 --------a~~~a~~~~e~~~~~a~~~~~~~~~ 103 (173)
T Consensus 89 Pv~idP~gIi~R~~~Ll~~~~dr~~~~v~r~~p 121 (368)
T COG4046 89 PVDIDPAGIIDRLRHLLEMGEDRFRKLVRRLVP 121 (368)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 346782226999999998605889999997287