HHsearch alignment for GI: 254781085 and conserved domain: PRK06328

>PRK06328 type III secretion system protein; Validated.
Probab=98.16  E-value=0.00047  Score=42.13  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r   52 EKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEI  131 (173)
Q Consensus        52 ~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~  131 (173)
T Consensus        22 ae~y~~~~~A~eilE~Ak~~Ae~~~~ea~~e~e~~~eea~~~G~~eG~~~~~~~la~~~~e~~~~~~~~e~~lv~lvl~a  101 (223)
T PRK06328         22 PEAFSALLDAKELLEKTKEDSEAYTQETHEECAELREEAKNQGFKEGSEAWSKQLAFLEKETQALRIQVKEALVPLAIAS  101 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999987499999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCC--HHHHHHHHHHHHHHHHHH
Q ss_conf             9999994339--999999999999999999
Q gi|254781085|r  132 VREIISQKMN--DDVNSSIFEKTISSIQSC  159 (173)
Q Consensus       132 ~~kil~~~l~--~~~~~~~I~~~i~~l~~~  159 (173)
T Consensus       102 arKIIg~el~~~pe~vl~iVr~aL~~vr~~  131 (223)
T PRK06328        102 VKKIIGKELELHPETIVSIISEALKELTQN  131 (223)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf             999988887608899999999999998618