HHsearch alignment for GI: 254781085 and conserved domain: PRK06328
>PRK06328 type III secretion system protein; Validated.
Probab=98.16 E-value=0.00047 Score=42.13 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 52 EKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEI 131 (173)
Q Consensus 52 ~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~ 131 (173)
T Consensus 22 ae~y~~~~~A~eilE~Ak~~Ae~~~~ea~~e~e~~~eea~~~G~~eG~~~~~~~la~~~~e~~~~~~~~e~~lv~lvl~a 101 (223)
T PRK06328 22 PEAFSALLDAKELLEKTKEDSEAYTQETHEECAELREEAKNQGFKEGSEAWSKQLAFLEKETQALRIQVKEALVPLAIAS 101 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987499999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHCC--HHHHHHHHHHHHHHHHHH
Q ss_conf 9999994339--999999999999999999
Q gi|254781085|r 132 VREIISQKMN--DDVNSSIFEKTISSIQSC 159 (173)
Q Consensus 132 ~~kil~~~l~--~~~~~~~I~~~i~~l~~~ 159 (173)
T Consensus 102 arKIIg~el~~~pe~vl~iVr~aL~~vr~~ 131 (223)
T PRK06328 102 VKKIIGKELELHPETIVSIISEALKELTQN 131 (223)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 999988887608899999999999998618