HHsearch alignment for GI: 254781085 and conserved domain: PRK09098
>PRK09098 type III secretion system protein HrpB; Validated.
Probab=96.02 E-value=0.098 Score=28.68 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999-----------9999999999999999999999999999999
Q gi|254781085|r 55 ENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQ-----------NIEQISALYLKDLEQKIHYMKLEAKRLLYAK 123 (173)
Q Consensus 55 ~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~-----------~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~ 123 (173)
T Consensus 35 ~~~~~~~~~~L~~Ar~eA~~Il~~Ar~~A~~I~~~Ar~e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~~~~~m~~r 114 (229)
T PRK09098 35 AAVHAERDAVLAAARDRAERIAAEARAQAEALLEDARREADRSARLGYAAGLRQALAEWHARGADHAFAERRAARRMRER 114 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999899999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999999999994339999999999
Q gi|254781085|r 124 IADFSVEIVREIISQKMNDDVNSSIFE 150 (173)
Q Consensus 124 ~~~la~~~~~kil~~~l~~~~~~~~I~ 150 (173)
T Consensus 115 La~iV~~AVekIv~~e~~~aL~~ra~~ 141 (229)
T PRK09098 115 LAEIVAAAVEQIVHGEDPAALFARAAQ 141 (229)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999999971398889999999