HHsearch alignment for GI: 254781085 and conserved domain: PRK09098

>PRK09098 type III secretion system protein HrpB; Validated.
Probab=96.02  E-value=0.098  Score=28.68  Aligned_cols=96  Identities=10%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999-----------9999999999999999999999999999999
Q gi|254781085|r   55 ENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQ-----------NIEQISALYLKDLEQKIHYMKLEAKRLLYAK  123 (173)
Q Consensus        55 ~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~-----------~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~  123 (173)
T Consensus        35 ~~~~~~~~~~L~~Ar~eA~~Il~~Ar~~A~~I~~~Ar~e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~~~~~m~~r  114 (229)
T PRK09098         35 AAVHAERDAVLAAARDRAERIAAEARAQAEALLEDARREADRSARLGYAAGLRQALAEWHARGADHAFAERRAARRMRER  114 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999899999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             999999999999994339999999999
Q gi|254781085|r  124 IADFSVEIVREIISQKMNDDVNSSIFE  150 (173)
Q Consensus       124 ~~~la~~~~~kil~~~l~~~~~~~~I~  150 (173)
T Consensus       115 La~iV~~AVekIv~~e~~~aL~~ra~~  141 (229)
T PRK09098        115 LAEIVAAAVEQIVHGEDPAALFARAAQ  141 (229)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             999999999999971398889999999