HHsearch alignment for GI: 254781085 and conserved domain: PRK13454
>PRK13454 F0F1 ATP synthase subunit B'; Provisional.
Probab=98.98 E-value=1e-06 Score=57.53 Aligned_cols=146 Identities=9% Similarity=0.167 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 979899999999-9999999999622889999999999999999999999999999999999999999999999999999
Q gi|254781085|r 2 HFDETFLVFMSL-IIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAK 80 (173)
Q Consensus 2 ~~d~tfw~~i~f-~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~ 80 (173)
T Consensus 24 Qld~~~f~sQiFWl~i~F~ily~vl~k~~lPrI~~---vLe~R~~~I~~dL~~Ae~~k~----eAe~~~~~ye~~L~~Ar 96 (181)
T PRK13454 24 QLDFDTFPNQIFWLLVTLVAIYFVLTRVALPRIGA---VLAERQGTITNDLAAAEELKQ----KAVEAEKAYNKALADAR 96 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf 99902407899999999999999999999988898---999999999988999999999----99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999-------99999999999999994339999999999999
Q gi|254781085|r 81 HRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLY-------AKIADFSVEIVREIISQKMNDDVNSSIFEKTI 153 (173)
Q Consensus 81 ~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~-------~~~~~la~~~~~kil~~~l~~~~~~~~I~~~i 153 (173)
T Consensus 97 ~eA~~ii~eAr~~a~~~~~~~~~~a~~el~~~i~~AE~~I~~~K~~Am~~i~~iA~d~a~~Iv~kL~g-k~~~~~v~aaV 175 (181)
T PRK13454 97 AEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAALGG-KADAAAVDAAV 175 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999988999999999999999999857-58778899999
Q ss_pred HH
Q ss_conf 99
Q gi|254781085|r 154 SS 155 (173)
Q Consensus 154 ~~ 155 (173)
T Consensus 176 ~~ 177 (181)
T PRK13454 176 AQ 177 (181)
T ss_pred HH
T ss_conf 98