Query         gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 173
No_of_seqs    115 out of 1862
Neff          8.2 
Searched_HMMs 23785
Date          Wed Jun  1 01:11:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781085.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2cly_A ATP synthase B chain, m  99.8 4.4E-20 1.9E-24  133.8  14.3  155    2-161    52-206 (214)
  2 1l2p_A ATP synthase B chain; a  97.9 7.3E-05 3.1E-09   45.5   9.7   60   63-122     2-61  (61)
  3 1b9u_A Protein (ATP synthase);  97.4 0.00013 5.5E-09   44.1   3.9   33    1-34      1-34  (34)
  4 3k5b_E V-type ATP synthase sub  97.3  0.0051 2.1E-07   34.8  11.7  100   56-155    11-110 (188)
  5 2dm9_A V-type ATP synthase sub  95.9  0.0085 3.6E-07   33.6   4.5   98   58-156    16-113 (198)
  6 2khk_A ATP synthase subunit B;  95.2  0.0012 5.2E-08   38.4  -1.6   50   31-80      2-51  (53)
  7 1l2p_A ATP synthase B chain; a  94.4    0.19   8E-06   25.7  10.0   57   54-110     4-60  (61)
  8 2dm9_A V-type ATP synthase sub  90.4   0.045 1.9E-06   29.4   0.2   46   66-111    13-58  (198)
  9 3ghg_A Fibrinogen alpha chain;  86.3     1.3 5.5E-05   20.9  13.1   41   29-69     51-91  (562)
 10 2k88_A Vacuolar proton pump su  76.0     3.1 0.00013   18.7   7.9   45   64-108    10-54  (60)
 11 2l16_A SEC-independent protein  73.9     3.1 0.00013   18.7   3.9   46    1-47      1-47  (78)
 12 2kk7_A V-type ATP synthase sub  68.9     4.6 0.00019   17.7   6.0   32   63-94     14-45  (52)
 13 1m1j_B Fibrinogen beta chain;   60.7     6.7 0.00028   16.8  16.6   47   29-75     87-133 (464)
 14 2rdd_B UPF0092 membrane protei  56.5     5.7 0.00024   17.2   2.5   25   13-37      8-32  (37)
 15 1rzh_H Reaction center protein  52.8     9.1 0.00038   16.0   3.5   22    2-23      9-30  (260)
 16 3lhp_S 4E10_D0_1ISEA_004_N (T9  50.9     9.7 0.00041   15.8   6.1   25   24-51     39-63  (123)
 17 1eys_H Photosynthetic reaction  47.7      11 0.00046   15.5   3.8   22    2-23      8-29  (259)
 18 3ghg_B Fibrinogen beta chain;   46.0      12 0.00049   15.4  13.2   32   29-60     82-113 (461)
 19 2oar_A Large-conductance mecha  37.6      16 0.00067   14.6   4.9   25    7-32     95-120 (174)
 20 1deq_A Fibrinogen (alpha chain  28.8      22 0.00094   13.7  21.0   29   29-57     54-82  (390)
 21 3few_X Colicin S4; cell lysis,  27.0      24   0.001   13.5   7.4   32  138-170   367-400 (505)
 22 3err_A Fusion protein of micro  26.7      24   0.001   13.5   4.9   42   99-140    59-105 (536)
 23 1v54_D Cytochrome C oxidase su  21.0      29  0.0012   13.1   1.2   25   11-35     89-113 (147)
 24 2zz9_A Aquaporin-4; water tran  20.1      33  0.0014   12.7   2.6   36    5-40    209-244 (301)

No 1  
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=99.84  E-value=4.4e-20  Score=133.82  Aligned_cols=155  Identities=10%  Similarity=0.058  Sum_probs=142.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97989999999999999999996228899999999999999999999999999999999999999999999999999999
Q gi|254781085|r    2 HFDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKH   81 (173)
Q Consensus         2 ~~d~tfw~~i~f~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~   81 (173)
                      -+|+.||++++|++|+++++++ +|+||.++||+|.+.|.+++++|+..+.++.+...++++++..+..++..++..+++
T Consensus        52 v~~~ef~~~lsflif~~~~~k~-~g~~i~~~Ld~r~~~I~~~l~ea~~~~~ea~~~~~e~ekkl~~~~~~~~~i~~~ake  130 (214)
T 2cly_A           52 VITPETFSAISTIGFLVYIVKK-YGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRN  130 (214)
T ss_dssp             ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHH
T ss_pred             EECHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8874999999999999999999-889999999998888998999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999433999999999999999999999
Q gi|254781085|r   82 RAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQ  161 (173)
Q Consensus        82 ~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~l~~~~~~~~I~~~i~~l~~~~k  161 (173)
                      .+....+....++...+......+...+....+.+++.++.++++.++..+.    ..++++.++.+|+++|.+|+..-+
T Consensus       131 ~~~~~~e~~~~e~~~~v~~~~k~~ld~~~~~e~~~~~~~q~~~v~~~~~~V~----k~i~~~~~k~~i~~~I~~Lk~La~  206 (214)
T 2cly_A          131 NIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVV----QSISAQQEKETIAKCIADLKLLSK  206 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----C-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999999999999----876989899999999999998998


No 2  
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=97.94  E-value=7.3e-05  Score=45.54  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r   63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA  122 (173)
Q Consensus        63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~  122 (173)
                      ..|.+++.++..|+.+|+..+..++++....+..+.++++..++.+|+.+...++.+||.
T Consensus         2 e~L~eAk~eAa~Ii~qA~kra~qIveeAk~~A~~Ea~rIi~~A~~eIe~E~~~A~e~LRk   61 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             777999999999999999779999999999999999999998999999999999997509


No 3  
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=97.35  E-value=0.00013  Score=44.07  Aligned_cols=33  Identities=15%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9979899999-999999999999962288999999
Q gi|254781085|r    1 MHFDETFLVF-MSLIIFLVIVVYLRIPSILLSFLD   34 (173)
Q Consensus         1 m~~d~tfw~~-i~f~il~~il~~~~~~~~i~~~l~   34 (173)
                      ||+|+|++.. +.|++|+ +++.+++|+|+.+.||
T Consensus         1 MniNaTl~gQ~i~F~~fv-wf~mk~vWPpi~~ame   34 (34)
T 1b9u_A            1 MNLNATILGQAIAFVLFV-LFCMKYVWPPLMAAIE   34 (34)
T ss_dssp             CCCHHHHHHHHHHHHHHH-HHHHHHTHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
T ss_conf             961189999999999999-9999986238888619


No 4  
>3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar ATPase/synthase, V-type ATPase/synthase, A-type ATPase/synthase; 3.10A {Thermus thermophilus HB8}
Probab=97.31  E-value=0.0051  Score=34.85  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r   56 NILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREI  135 (173)
Q Consensus        56 ~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~ki  135 (173)
                      +...+.+..+.+++.++..++.++..+++.........+..+.+..................-..+....+-....+...
T Consensus        11 ea~~~~~~i~~eA~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~s~a~~~~r~~~l~~k~~li~~~~~~~~~~   90 (188)
T 3k5b_E           11 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA   90 (188)
T ss_dssp             HHHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHH
Q ss_conf             99433999999999999999
Q gi|254781085|r  136 ISQKMNDDVNSSIFEKTISS  155 (173)
Q Consensus       136 l~~~l~~~~~~~~I~~~i~~  155 (173)
                      |..-.+.+.+..++...+.+
T Consensus        91 L~~~~~~~~y~~~l~~li~e  110 (188)
T 3k5b_E           91 LEALPQKPEWPEVVRKLALE  110 (188)
T ss_dssp             HHTSTTSTTHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHH
T ss_conf             98412340599999999999


No 5  
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A
Probab=95.88  E-value=0.0085  Score=33.56  Aligned_cols=98  Identities=11%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r   58 LMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIIS  137 (173)
Q Consensus        58 ~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~  137 (173)
                      ..+....+.+++.++..++.+++.++..........+..+++.........+..+.....-..+..+.+.....+.+.+.
T Consensus        16 ~~~a~~I~~eA~~~a~~i~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~~~~~~~~~l~   95 (198)
T 2dm9_A           16 ERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE   95 (198)
T ss_dssp             -----------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999998999999999999999999999999886


Q ss_pred             HHCCHHHHHHHHHHHHHHH
Q ss_conf             4339999999999999999
Q gi|254781085|r  138 QKMNDDVNSSIFEKTISSI  156 (173)
Q Consensus       138 ~~l~~~~~~~~I~~~i~~l  156 (173)
                      . ++.+.+..++...+.+.
T Consensus        96 ~-~~~~~y~~~l~~ll~~a  113 (198)
T 2dm9_A           96 T-MSEDEYFESVKALLKEA  113 (198)
T ss_dssp             H-CCHHHHHHHHHHHHHHH
T ss_pred             H-CCCCHHHHHHHHHHHHH
T ss_conf             2-25215999999999999


No 6  
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12}
Probab=95.23  E-value=0.0012  Score=38.40  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999
Q gi|254781085|r   31 SFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAK   80 (173)
Q Consensus        31 ~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~   80 (173)
                      +.|++|+.+|.+.|..|+..+.+.+....+....|.+++.++..|+.+|.
T Consensus         2 ~AleeRqkkIAdGL~aAer~k~~Le~A~~~~~~~l~eAK~~A~~iI~qA~   51 (53)
T 2khk_A            2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN   51 (53)
T ss_dssp             CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37889998988679889977889999999999999999999999999745


No 7  
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=94.44  E-value=0.19  Score=25.72  Aligned_cols=57  Identities=9%  Similarity=-0.006  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r   54 SENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIH  110 (173)
Q Consensus        54 a~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~  110 (173)
                      ..+...+....+..++..+..|+.+++..|..+.+.++..++.+++.....+...+.
T Consensus         4 L~eAk~eAa~Ii~qA~kra~qIveeAk~~A~~Ea~rIi~~A~~eIe~E~~~A~e~LR   60 (61)
T 1l2p_A            4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             799999999999999977999999999999999999999899999999999999750


No 8  
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A
Probab=90.43  E-value=0.045  Score=29.38  Aligned_cols=46  Identities=17%  Similarity=0.266  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999
Q gi|254781085|r   66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHY  111 (173)
Q Consensus        66 ~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~  111 (173)
                      .+++.++..|+.+|+.+++.+..+...++..........++.++..
T Consensus        13 ~ea~~~a~~I~~eA~~~a~~i~~ea~~~~~~~~~~~~~~~~~~~~~   58 (198)
T 2dm9_A           13 KEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL   58 (198)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999999


No 9  
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.27  E-value=1.3  Score=20.88  Aligned_cols=41  Identities=5%  Similarity=0.031  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999
Q gi|254781085|r   29 LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVE   69 (173)
Q Consensus        29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~   69 (173)
                      +...|+++...+.+.+++......+..+...+....+....
T Consensus        51 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~   91 (562)
T 3ghg_A           51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIM   91 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56789886544889999999999999988888999999999


No 10 
>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae}
Probab=75.95  E-value=3.1  Score=18.68  Aligned_cols=45  Identities=13%  Similarity=0.133  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999
Q gi|254781085|r   64 KHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQK  108 (173)
Q Consensus        64 ~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~  108 (173)
                      .|..+..++..|+.+|+..-.....++..+|..+++....+-+.+
T Consensus        10 qLL~AEk~A~eiV~eARk~k~~rLKqAK~EA~~EIe~yr~qkE~e   54 (60)
T 2k88_A           10 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKE   54 (60)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999988999999999999999888899999999999999999999


No 11 
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=73.89  E-value=3.1  Score=18.70  Aligned_cols=46  Identities=7%  Similarity=0.052  Sum_probs=21.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99798999999999999999-999622889999999999999999999
Q gi|254781085|r    1 MHFDETFLVFMSLIIFLVIV-VYLRIPSILLSFLDAHADKIRDDIFEA   47 (173)
Q Consensus         1 m~~d~tfw~~i~f~il~~il-~~~~~~~~i~~~l~~R~~~I~~~l~~A   47 (173)
                      |..|..||=++..+++.+++ --.-+|. +.+.+-.-..++++..++.
T Consensus         1 M~~~IG~~ElliI~vvallvfGPkkLP~-l~r~~Gk~i~~fk~~~~e~   47 (78)
T 2l16_A            1 MFSNIGIPGLILIFVIALIIFGPSKLPE-IGRAAGRTLLEFKSATKSL   47 (78)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHSCTTTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHEECCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf             9765889999999999863168157699-9999999999999999998


No 12 
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=68.89  E-value=4.6  Score=17.70  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999
Q gi|254781085|r   63 EKHSKVEEETREIILAAKHRAKILAEEGCQNI   94 (173)
Q Consensus        63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a   94 (173)
                      +.+.+++.++..|+.+|..+.+.+.+.+..++
T Consensus        14 KIleDA~~~A~kI~~EAqkEk~~il~KAkeEA   45 (52)
T 2kk7_A           14 KILDDAKAEANKIISEAEAEKAKILEKAKEEA   45 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998886899999899988999999989999


No 13 
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.66  E-value=6.7  Score=16.77  Aligned_cols=47  Identities=6%  Similarity=0.032  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999
Q gi|254781085|r   29 LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREI   75 (173)
Q Consensus        29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i   75 (173)
                      |...|.+-...++..+++.+....+.++...+.+..+.....+....
T Consensus        87 Lqd~L~kQe~~lkeqi~eLeq~ieqLqq~~~~lqq~i~~L~eki~~l  133 (464)
T 1m1j_B           87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKT  133 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999


No 14 
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=56.54  E-value=5.7  Score=17.15  Aligned_cols=25  Identities=12%  Similarity=0.255  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999962288999999999
Q gi|254781085|r   13 LIIFLVIVVYLRIPSILLSFLDAHA   37 (173)
Q Consensus        13 f~il~~il~~~~~~~~i~~~l~~R~   37 (173)
                      .+++++.+.||++.+|=.+--.+++
T Consensus         8 ~~v~~f~ifYFliIRPQ~Kr~Ke~~   32 (37)
T 2rdd_B            8 MLVVFGLIFYFMILRPQQKRTKEHK   32 (37)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             9999999999999570177799999


No 15 
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=52.81  E-value=9.1  Score=16.00  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=15.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9798999999999999999999
Q gi|254781085|r    2 HFDETFLVFMSLIIFLVIVVYL   23 (173)
Q Consensus         2 ~~d~tfw~~i~f~il~~il~~~   23 (173)
                      +||..-.++..|.+||+.|+|+
T Consensus         9 ~~D~Aq~~l~~Fw~FFa~Li~Y   30 (260)
T 1rzh_H            9 NFDLASLAIYSFWIFLAGLIYY   30 (260)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHHHHHHHHHHH
T ss_conf             4249999999999999999998


No 16 
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=50.93  E-value=9.7  Score=15.82  Aligned_cols=25  Identities=20%  Similarity=-0.081  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6228899999999999999999999999
Q gi|254781085|r   24 RIPSILLSFLDAHADKIRDDIFEARRLR   51 (173)
Q Consensus        24 ~~~~~i~~~l~~R~~~I~~~l~~A~~~~   51 (173)
                      .+|.|   .-+.|++.+..--..++..+
T Consensus        39 rlp~P---T~E~R~elvK~ak~~~E~aK   63 (123)
T 3lhp_S           39 RKVFP---TEERIKDWLKIVRGEAEQAR   63 (123)
T ss_dssp             TTSCC---CHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCC---CHHHHHHHHHHHHHHHHHHH
T ss_conf             58999---98999999999999999999


No 17 
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=47.67  E-value=11  Score=15.52  Aligned_cols=22  Identities=9%  Similarity=0.262  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9798999999999999999999
Q gi|254781085|r    2 HFDETFLVFMSLIIFLVIVVYL   23 (173)
Q Consensus         2 ~~d~tfw~~i~f~il~~il~~~   23 (173)
                      +||..=.++-.|.+||+.|+|+
T Consensus         8 y~DvAql~ly~Fw~FFa~Lv~Y   29 (259)
T 1eys_H            8 YIDAAQITIWAFWLFFFGLIIY   29 (259)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHHHHHHHHHHH
T ss_conf             1309999999999999999998


No 18 
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=46.05  E-value=12  Score=15.37  Aligned_cols=32  Identities=19%  Similarity=0.081  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999
Q gi|254781085|r   29 LLSFLDAHADKIRDDIFEARRLREKSENILMQ   60 (173)
Q Consensus        29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~   60 (173)
                      |...|.+....+++++++-+.......+...+
T Consensus        82 Lqd~L~kqe~~lkkqIeeLeq~L~~L~q~~~e  113 (461)
T 3ghg_B           82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSS  113 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999987899999999999999999999


No 19 
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=37.60  E-value=16  Score=14.59  Aligned_cols=25  Identities=12%  Similarity=0.280  Sum_probs=12.5

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999-99999999999999622889999
Q gi|254781085|r    7 FLV-FMSLIIFLVIVVYLRIPSILLSF   32 (173)
Q Consensus         7 fw~-~i~f~il~~il~~~~~~~~i~~~   32 (173)
                      |.. +|+|+|+- +.+||.+-+|+.+.
T Consensus        95 Fl~aiInFlIiA-~vvyFlivk~~nkl  120 (174)
T 2oar_A           95 LLSAAINFFLIA-FAVYFLVVLPYNTL  120 (174)
T ss_dssp             HHHHHHHHHHHH-HHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf             999999999999-99999999999986


No 20 
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.79  E-value=22  Score=13.73  Aligned_cols=29  Identities=10%  Similarity=0.076  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999
Q gi|254781085|r   29 LLSFLDAHADKIRDDIFEARRLREKSENI   57 (173)
Q Consensus        29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~   57 (173)
                      +...|++-...+...+++......+.++.
T Consensus        54 ~q~~ie~~~~~~~~~i~~l~~~l~~~q~~   82 (390)
T 1deq_A           54 MKGLIDEVDQDFTSRINKLRDSLFNYQKN   82 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999


No 21 
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=27.00  E-value=24  Score=13.54  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=13.5

Q ss_pred             HHCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf             4339999999999999999--99999974004431
Q gi|254781085|r  138 QKMNDDVNSSIFEKTISSI--QSCHQMDKNTTETL  170 (173)
Q Consensus       138 ~~l~~~~~~~~I~~~i~~l--~~~~k~~~n~~~~~  170 (173)
                      .+++..+.+. |..+++.+  ....+.+.+.+.++
T Consensus       367 ~Ki~~kdk~a-i~~a~e~vn~~~la~nl~k~sk~~  400 (505)
T 3few_X          367 FKFNRADSDA-LANVWRSIDAQDMANKLGNISKAF  400 (505)
T ss_dssp             CCCCHHHHHH-HHHHHHHCCHHHHHHHHTTTCGGG
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8886741999-999999988999999999999885


No 22 
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus}
Probab=26.66  E-value=24  Score=13.50  Aligned_cols=42  Identities=5%  Similarity=0.099  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999-----999999999999999433
Q gi|254781085|r   99 ALYLKDLEQKIHYMKLEAKRLLYA-----KIADFSVEIVREIISQKM  140 (173)
Q Consensus        99 ~~~~~~a~~~I~~~~~~a~~~l~~-----~~~~la~~~~~kil~~~l  140 (173)
                      .-.+..|...+......-..++++     ..+.+.++.+.-+++.+.
T Consensus        59 ~P~l~~A~~al~~l~k~di~Elks~~~PP~~V~~v~eaV~illg~~~  105 (536)
T 3err_A           59 EPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGEST  105 (536)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             59999999999649997899997238996799999999999958999


No 23 
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* 3ag3_D* ...
Probab=21.04  E-value=29  Score=13.10  Aligned_cols=25  Identities=8%  Similarity=0.077  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999622889999999
Q gi|254781085|r   11 MSLIIFLVIVVYLRIPSILLSFLDA   35 (173)
Q Consensus        11 i~f~il~~il~~~~~~~~i~~~l~~   35 (173)
                      ++|.++++++.+.++++|+-..|++
T Consensus        89 i~~s~~i~~~~r~~v~pp~P~T~~~  113 (147)
T 1v54_D           89 IGFTALLLIWEKHYVYGPIPHTFEE  113 (147)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCGGGSH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             9999999999999726999988899


No 24 
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=20.12  E-value=33  Score=12.74  Aligned_cols=36  Identities=8%  Similarity=-0.084  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999962288999999999999
Q gi|254781085|r    5 ETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKI   40 (173)
Q Consensus         5 ~tfw~~i~f~il~~il~~~~~~~~i~~~l~~R~~~I   40 (173)
                      |-||+.=...-++..++|.+++.|-...-+.+++.-
T Consensus       209 wVy~vgP~~Ga~laa~ly~~l~~p~~~~~~~~~~~~  244 (301)
T 2zz9_A          209 WIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAF  244 (301)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred             EEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHH
T ss_conf             642239889999999999998388723321030110


Done!