Query gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 173 No_of_seqs 115 out of 1862 Neff 8.2 Searched_HMMs 23785 Date Wed Jun 1 01:11:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781085.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2cly_A ATP synthase B chain, m 99.8 4.4E-20 1.9E-24 133.8 14.3 155 2-161 52-206 (214) 2 1l2p_A ATP synthase B chain; a 97.9 7.3E-05 3.1E-09 45.5 9.7 60 63-122 2-61 (61) 3 1b9u_A Protein (ATP synthase); 97.4 0.00013 5.5E-09 44.1 3.9 33 1-34 1-34 (34) 4 3k5b_E V-type ATP synthase sub 97.3 0.0051 2.1E-07 34.8 11.7 100 56-155 11-110 (188) 5 2dm9_A V-type ATP synthase sub 95.9 0.0085 3.6E-07 33.6 4.5 98 58-156 16-113 (198) 6 2khk_A ATP synthase subunit B; 95.2 0.0012 5.2E-08 38.4 -1.6 50 31-80 2-51 (53) 7 1l2p_A ATP synthase B chain; a 94.4 0.19 8E-06 25.7 10.0 57 54-110 4-60 (61) 8 2dm9_A V-type ATP synthase sub 90.4 0.045 1.9E-06 29.4 0.2 46 66-111 13-58 (198) 9 3ghg_A Fibrinogen alpha chain; 86.3 1.3 5.5E-05 20.9 13.1 41 29-69 51-91 (562) 10 2k88_A Vacuolar proton pump su 76.0 3.1 0.00013 18.7 7.9 45 64-108 10-54 (60) 11 2l16_A SEC-independent protein 73.9 3.1 0.00013 18.7 3.9 46 1-47 1-47 (78) 12 2kk7_A V-type ATP synthase sub 68.9 4.6 0.00019 17.7 6.0 32 63-94 14-45 (52) 13 1m1j_B Fibrinogen beta chain; 60.7 6.7 0.00028 16.8 16.6 47 29-75 87-133 (464) 14 2rdd_B UPF0092 membrane protei 56.5 5.7 0.00024 17.2 2.5 25 13-37 8-32 (37) 15 1rzh_H Reaction center protein 52.8 9.1 0.00038 16.0 3.5 22 2-23 9-30 (260) 16 3lhp_S 4E10_D0_1ISEA_004_N (T9 50.9 9.7 0.00041 15.8 6.1 25 24-51 39-63 (123) 17 1eys_H Photosynthetic reaction 47.7 11 0.00046 15.5 3.8 22 2-23 8-29 (259) 18 3ghg_B Fibrinogen beta chain; 46.0 12 0.00049 15.4 13.2 32 29-60 82-113 (461) 19 2oar_A Large-conductance mecha 37.6 16 0.00067 14.6 4.9 25 7-32 95-120 (174) 20 1deq_A Fibrinogen (alpha chain 28.8 22 0.00094 13.7 21.0 29 29-57 54-82 (390) 21 3few_X Colicin S4; cell lysis, 27.0 24 0.001 13.5 7.4 32 138-170 367-400 (505) 22 3err_A Fusion protein of micro 26.7 24 0.001 13.5 4.9 42 99-140 59-105 (536) 23 1v54_D Cytochrome C oxidase su 21.0 29 0.0012 13.1 1.2 25 11-35 89-113 (147) 24 2zz9_A Aquaporin-4; water tran 20.1 33 0.0014 12.7 2.6 36 5-40 209-244 (301) No 1 >2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T* Probab=99.84 E-value=4.4e-20 Score=133.82 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=142.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97989999999999999999996228899999999999999999999999999999999999999999999999999999 Q gi|254781085|r 2 HFDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKH 81 (173) Q Consensus 2 ~~d~tfw~~i~f~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~ 81 (173) -+|+.||++++|++|+++++++ +|+||.++||+|.+.|.+++++|+..+.++.+...++++++..+..++..++..+++ T Consensus 52 v~~~ef~~~lsflif~~~~~k~-~g~~i~~~Ld~r~~~I~~~l~ea~~~~~ea~~~~~e~ekkl~~~~~~~~~i~~~ake 130 (214) T 2cly_A 52 VITPETFSAISTIGFLVYIVKK-YGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRN 130 (214) T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHH T ss_pred EECHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8874999999999999999999-889999999998888998999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999433999999999999999999999 Q gi|254781085|r 82 RAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQ 161 (173) Q Consensus 82 ~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~l~~~~~~~~I~~~i~~l~~~~k 161 (173) .+....+....++...+......+...+....+.+++.++.++++.++..+. ..++++.++.+|+++|.+|+..-+ T Consensus 131 ~~~~~~e~~~~e~~~~v~~~~k~~ld~~~~~e~~~~~~~q~~~v~~~~~~V~----k~i~~~~~k~~i~~~I~~Lk~La~ 206 (214) T 2cly_A 131 NIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVV----QSISAQQEKETIAKCIADLKLLSK 206 (214) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----C----------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999999999999----876989899999999999998998 No 2 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Probab=97.94 E-value=7.3e-05 Score=45.54 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=57.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999 Q gi|254781085|r 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA 122 (173) Q Consensus 63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~ 122 (173) ..|.+++.++..|+.+|+..+..++++....+..+.++++..++.+|+.+...++.+||. T Consensus 2 e~L~eAk~eAa~Ii~qA~kra~qIveeAk~~A~~Ea~rIi~~A~~eIe~E~~~A~e~LRk 61 (61) T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK 61 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 777999999999999999779999999999999999999998999999999999997509 No 3 >1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1 Probab=97.35 E-value=0.00013 Score=44.07 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=26.1 Q ss_pred CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9979899999-999999999999962288999999 Q gi|254781085|r 1 MHFDETFLVF-MSLIIFLVIVVYLRIPSILLSFLD 34 (173) Q Consensus 1 m~~d~tfw~~-i~f~il~~il~~~~~~~~i~~~l~ 34 (173) ||+|+|++.. +.|++|+ +++.+++|+|+.+.|| T Consensus 1 MniNaTl~gQ~i~F~~fv-wf~mk~vWPpi~~ame 34 (34) T 1b9u_A 1 MNLNATILGQAIAFVLFV-LFCMKYVWPPLMAAIE 34 (34) T ss_dssp CCCHHHHHHHHHHHHHHH-HHHHHHTHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC T ss_conf 961189999999999999-9999986238888619 No 4 >3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar ATPase/synthase, V-type ATPase/synthase, A-type ATPase/synthase; 3.10A {Thermus thermophilus HB8} Probab=97.31 E-value=0.0051 Score=34.85 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=82.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781085|r 56 NILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREI 135 (173) Q Consensus 56 ~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~ki 135 (173) +...+.+..+.+++.++..++.++..+++.........+..+.+..................-..+....+-....+... T Consensus 11 ea~~~~~~i~~eA~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~s~a~~~~r~~~l~~k~~li~~~~~~~~~~ 90 (188) T 3k5b_E 11 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA 90 (188) T ss_dssp HHHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHCCHHHHHHHHHHHHHH Q ss_conf 99433999999999999999 Q gi|254781085|r 136 ISQKMNDDVNSSIFEKTISS 155 (173) Q Consensus 136 l~~~l~~~~~~~~I~~~i~~ 155 (173) |..-.+.+.+..++...+.+ T Consensus 91 L~~~~~~~~y~~~l~~li~e 110 (188) T 3k5b_E 91 LEALPQKPEWPEVVRKLALE 110 (188) T ss_dssp HHTSTTSTTHHHHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHH T ss_conf 98412340599999999999 No 5 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Probab=95.88 E-value=0.0085 Score=33.56 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=68.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781085|r 58 LMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIIS 137 (173) Q Consensus 58 ~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~ 137 (173) ..+....+.+++.++..++.+++.++..........+..+++.........+..+.....-..+..+.+.....+.+.+. T Consensus 16 ~~~a~~I~~eA~~~a~~i~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~~~~~~~~~l~ 95 (198) T 2dm9_A 16 ERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE 95 (198) T ss_dssp -----------------------------------------------------------------CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999998999999999999999999999999886 Q ss_pred HHCCHHHHHHHHHHHHHHH Q ss_conf 4339999999999999999 Q gi|254781085|r 138 QKMNDDVNSSIFEKTISSI 156 (173) Q Consensus 138 ~~l~~~~~~~~I~~~i~~l 156 (173) . ++.+.+..++...+.+. T Consensus 96 ~-~~~~~y~~~l~~ll~~a 113 (198) T 2dm9_A 96 T-MSEDEYFESVKALLKEA 113 (198) T ss_dssp H-CCHHHHHHHHHHHHHHH T ss_pred H-CCCCHHHHHHHHHHHHH T ss_conf 2-25215999999999999 No 6 >2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} Probab=95.23 E-value=0.0012 Score=38.40 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=44.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999 Q gi|254781085|r 31 SFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAK 80 (173) Q Consensus 31 ~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~ 80 (173) +.|++|+.+|.+.|..|+..+.+.+....+....|.+++.++..|+.+|. T Consensus 2 ~AleeRqkkIAdGL~aAer~k~~Le~A~~~~~~~l~eAK~~A~~iI~qA~ 51 (53) T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN 51 (53) T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 37889998988679889977889999999999999999999999999745 No 7 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Probab=94.44 E-value=0.19 Score=25.72 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=48.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999 Q gi|254781085|r 54 SENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIH 110 (173) Q Consensus 54 a~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~ 110 (173) ..+...+....+..++..+..|+.+++..|..+.+.++..++.+++.....+...+. T Consensus 4 L~eAk~eAa~Ii~qA~kra~qIveeAk~~A~~Ea~rIi~~A~~eIe~E~~~A~e~LR 60 (61) T 1l2p_A 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 799999999999999977999999999999999999999899999999999999750 No 8 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Probab=90.43 E-value=0.045 Score=29.38 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999 Q gi|254781085|r 66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHY 111 (173) Q Consensus 66 ~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~ 111 (173) .+++.++..|+.+|+.+++.+..+...++..........++.++.. T Consensus 13 ~ea~~~a~~I~~eA~~~a~~i~~ea~~~~~~~~~~~~~~~~~~~~~ 58 (198) T 2dm9_A 13 KEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL 58 (198) T ss_dssp ---------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999999 No 9 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=86.27 E-value=1.3 Score=20.88 Aligned_cols=41 Identities=5% Similarity=0.031 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999 Q gi|254781085|r 29 LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVE 69 (173) Q Consensus 29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~ 69 (173) +...|+++...+.+.+++......+..+...+....+.... T Consensus 51 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (562) T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIM 91 (562) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56789886544889999999999999988888999999999 No 10 >2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} Probab=75.95 E-value=3.1 Score=18.68 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999 Q gi|254781085|r 64 KHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQK 108 (173) Q Consensus 64 ~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~ 108 (173) .|..+..++..|+.+|+..-.....++..+|..+++....+-+.+ T Consensus 10 qLL~AEk~A~eiV~eARk~k~~rLKqAK~EA~~EIe~yr~qkE~e 54 (60) T 2k88_A 10 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKE 54 (60) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999988999999999999999888899999999999999999999 No 11 >2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis} Probab=73.89 E-value=3.1 Score=18.70 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=21.6 Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99798999999999999999-999622889999999999999999999 Q gi|254781085|r 1 MHFDETFLVFMSLIIFLVIV-VYLRIPSILLSFLDAHADKIRDDIFEA 47 (173) Q Consensus 1 m~~d~tfw~~i~f~il~~il-~~~~~~~~i~~~l~~R~~~I~~~l~~A 47 (173) |..|..||=++..+++.+++ --.-+|. +.+.+-.-..++++..++. T Consensus 1 M~~~IG~~ElliI~vvallvfGPkkLP~-l~r~~Gk~i~~fk~~~~e~ 47 (78) T 2l16_A 1 MFSNIGIPGLILIFVIALIIFGPSKLPE-IGRAAGRTLLEFKSATKSL 47 (78) T ss_dssp CCSSSCHHHHHHHHHHHHHHSCTTTHHH-HHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHEECCHHHHH-HHHHHHHHHHHHHHHHHHH T ss_conf 9765889999999999863168157699-9999999999999999998 No 12 >2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} Probab=68.89 E-value=4.6 Score=17.70 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999 Q gi|254781085|r 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNI 94 (173) Q Consensus 63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a 94 (173) +.+.+++.++..|+.+|..+.+.+.+.+..++ T Consensus 14 KIleDA~~~A~kI~~EAqkEk~~il~KAkeEA 45 (52) T 2kk7_A 14 KILDDAKAEANKIISEAEAEKAKILEKAKEEA 45 (52) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998886899999899988999999989999 No 13 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Probab=60.66 E-value=6.7 Score=16.77 Aligned_cols=47 Identities=6% Similarity=0.032 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999 Q gi|254781085|r 29 LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREI 75 (173) Q Consensus 29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i 75 (173) |...|.+-...++..+++.+....+.++...+.+..+.....+.... T Consensus 87 Lqd~L~kQe~~lkeqi~eLeq~ieqLqq~~~~lqq~i~~L~eki~~l 133 (464) T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKT 133 (464) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999 No 14 >2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} Probab=56.54 E-value=5.7 Score=17.15 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999962288999999999 Q gi|254781085|r 13 LIIFLVIVVYLRIPSILLSFLDAHA 37 (173) Q Consensus 13 f~il~~il~~~~~~~~i~~~l~~R~ 37 (173) .+++++.+.||++.+|=.+--.+++ T Consensus 8 ~~v~~f~ifYFliIRPQ~Kr~Ke~~ 32 (37) T 2rdd_B 8 MLVVFGLIFYFMILRPQQKRTKEHK 32 (37) T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 9999999999999570177799999 No 15 >1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ... Probab=52.81 E-value=9.1 Score=16.00 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=15.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9798999999999999999999 Q gi|254781085|r 2 HFDETFLVFMSLIIFLVIVVYL 23 (173) Q Consensus 2 ~~d~tfw~~i~f~il~~il~~~ 23 (173) +||..-.++..|.+||+.|+|+ T Consensus 9 ~~D~Aq~~l~~Fw~FFa~Li~Y 30 (260) T 1rzh_H 9 NFDLASLAIYSFWIFLAGLIYY 30 (260) T ss_dssp --CHHHHHHHHHHHHHHHHHHH T ss_pred EEEHHHHHHHHHHHHHHHHHHH T ss_conf 4249999999999999999998 No 16 >3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Probab=50.93 E-value=9.7 Score=15.82 Aligned_cols=25 Identities=20% Similarity=-0.081 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6228899999999999999999999999 Q gi|254781085|r 24 RIPSILLSFLDAHADKIRDDIFEARRLR 51 (173) Q Consensus 24 ~~~~~i~~~l~~R~~~I~~~l~~A~~~~ 51 (173) .+|.| .-+.|++.+..--..++..+ T Consensus 39 rlp~P---T~E~R~elvK~ak~~~E~aK 63 (123) T 3lhp_S 39 RKVFP---TEERIKDWLKIVRGEAEQAR 63 (123) T ss_dssp TTSCC---CHHHHHHHHHHHHHHHHHHH T ss_pred ECCCC---CHHHHHHHHHHHHHHHHHHH T ss_conf 58999---98999999999999999999 No 17 >1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1 Probab=47.67 E-value=11 Score=15.52 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=15.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9798999999999999999999 Q gi|254781085|r 2 HFDETFLVFMSLIIFLVIVVYL 23 (173) Q Consensus 2 ~~d~tfw~~i~f~il~~il~~~ 23 (173) +||..=.++-.|.+||+.|+|+ T Consensus 8 y~DvAql~ly~Fw~FFa~Lv~Y 29 (259) T 1eys_H 8 YIDAAQITIWAFWLFFFGLIIY 29 (259) T ss_dssp CCCHHHHHHHHHHHHHHHHHHH T ss_pred EEEHHHHHHHHHHHHHHHHHHH T ss_conf 1309999999999999999998 No 18 >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Probab=46.05 E-value=12 Score=15.37 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999 Q gi|254781085|r 29 LLSFLDAHADKIRDDIFEARRLREKSENILMQ 60 (173) Q Consensus 29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~ 60 (173) |...|.+....+++++++-+.......+...+ T Consensus 82 Lqd~L~kqe~~lkkqIeeLeq~L~~L~q~~~e 113 (461) T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSS 113 (461) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999987899999999999999999999 No 19 >2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1 Probab=37.60 E-value=16 Score=14.59 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=12.5 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999-99999999999999622889999 Q gi|254781085|r 7 FLV-FMSLIIFLVIVVYLRIPSILLSF 32 (173) Q Consensus 7 fw~-~i~f~il~~il~~~~~~~~i~~~ 32 (173) |.. +|+|+|+- +.+||.+-+|+.+. T Consensus 95 Fl~aiInFlIiA-~vvyFlivk~~nkl 120 (174) T 2oar_A 95 LLSAAINFFLIA-FAVYFLVVLPYNTL 120 (174) T ss_dssp HHHHHHHHHHHH-HHHHHHTHHHHHHH T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH T ss_conf 999999999999-99999999999986 No 20 >1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1 Probab=28.79 E-value=22 Score=13.73 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999 Q gi|254781085|r 29 LLSFLDAHADKIRDDIFEARRLREKSENI 57 (173) Q Consensus 29 i~~~l~~R~~~I~~~l~~A~~~~~~a~~~ 57 (173) +...|++-...+...+++......+.++. T Consensus 54 ~q~~ie~~~~~~~~~i~~l~~~l~~~q~~ 82 (390) T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999 No 21 >3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} Probab=27.00 E-value=24 Score=13.54 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=13.5 Q ss_pred HHCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH Q ss_conf 4339999999999999999--99999974004431 Q gi|254781085|r 138 QKMNDDVNSSIFEKTISSI--QSCHQMDKNTTETL 170 (173) Q Consensus 138 ~~l~~~~~~~~I~~~i~~l--~~~~k~~~n~~~~~ 170 (173) .+++..+.+. |..+++.+ ....+.+.+.+.++ T Consensus 367 ~Ki~~kdk~a-i~~a~e~vn~~~la~nl~k~sk~~ 400 (505) T 3few_X 367 FKFNRADSDA-LANVWRSIDAQDMANKLGNISKAF 400 (505) T ss_dssp CCCCHHHHHH-HHHHHHHCCHHHHHHHHTTTCGGG T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8886741999-999999988999999999999885 No 22 >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Probab=26.66 E-value=24 Score=13.50 Aligned_cols=42 Identities=5% Similarity=0.099 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999-----999999999999999433 Q gi|254781085|r 99 ALYLKDLEQKIHYMKLEAKRLLYA-----KIADFSVEIVREIISQKM 140 (173) Q Consensus 99 ~~~~~~a~~~I~~~~~~a~~~l~~-----~~~~la~~~~~kil~~~l 140 (173) .-.+..|...+......-..++++ ..+.+.++.+.-+++.+. T Consensus 59 ~P~l~~A~~al~~l~k~di~Elks~~~PP~~V~~v~eaV~illg~~~ 105 (536) T 3err_A 59 EPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGEST 105 (536) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCSC T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 59999999999649997899997238996799999999999958999 No 23 >1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* 3ag3_D* ... Probab=21.04 E-value=29 Score=13.10 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999622889999999 Q gi|254781085|r 11 MSLIIFLVIVVYLRIPSILLSFLDA 35 (173) Q Consensus 11 i~f~il~~il~~~~~~~~i~~~l~~ 35 (173) ++|.++++++.+.++++|+-..|++ T Consensus 89 i~~s~~i~~~~r~~v~pp~P~T~~~ 113 (147) T 1v54_D 89 IGFTALLLIWEKHYVYGPIPHTFEE 113 (147) T ss_dssp HHHHHHHHHHHHHHTCCCCCGGGSH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 9999999999999726999988899 No 24 >2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Probab=20.12 E-value=33 Score=12.74 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999962288999999999999 Q gi|254781085|r 5 ETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKI 40 (173) Q Consensus 5 ~tfw~~i~f~il~~il~~~~~~~~i~~~l~~R~~~I 40 (173) |-||+.=...-++..++|.+++.|-...-+.+++.- T Consensus 209 wVy~vgP~~Ga~laa~ly~~l~~p~~~~~~~~~~~~ 244 (301) T 2zz9_A 209 WIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAF 244 (301) T ss_dssp THHHHHHHHHHHHHHHHHHTTTC------------- T ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHH T ss_conf 642239889999999999998388723321030110 Done!