RPSBLAST alignment for GI: 254781085 and conserved domain: pfam00430
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132
Score = 47.3 bits (113), Expect = 2e-06
Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 13 LIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEET 72
LI+ +++ + P L LD +KI ++I EA +++ +L + +++ ++ E
Sbjct: 10 LILVGLLIYFGYKP--LGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEA 67
Query: 73 REIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIV 132
EII AK A+ L EE ++ + L+ +I K +A L ++A +V+I
Sbjct: 68 SEIINNAKKEAQKLKEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQVAALAVQIA 127
Query: 133 REII 136
+++
Sbjct: 128 EKLL 131