RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
(173 letters)
>gnl|CDD|31055 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 64.1 bits (156), Expect = 2e-11
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 1/158 (0%)
Query: 1 MHFDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQ 60
+ ++ +I L ++ IL LD KI DD+ EA RL+E+++ +L +
Sbjct: 4 FNDTNILWQLIAFVILLWLLKKFVWKPIL-KALDERQAKIADDLAEAERLKEEAQALLAE 62
Query: 61 YKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLL 120
Y+++ + E+ EII AK A+ +AEE E+ + E +I K A L
Sbjct: 63 YEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEEL 122
Query: 121 YAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQS 158
A++A+ +V I +++ +K+++ + + I+ +
Sbjct: 123 RAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGE 160
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 47.3 bits (113), Expect = 2e-06
Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 13 LIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEET 72
LI+ +++ + P L LD +KI ++I EA +++ +L + +++ ++ E
Sbjct: 10 LILVGLLIYFGYKP--LGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEA 67
Query: 73 REIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIV 132
EII AK A+ L EE ++ + L+ +I K +A L ++A +V+I
Sbjct: 68 SEIINNAKKEAQKLKEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQVAALAVQIA 127
Query: 133 REII 136
+++
Sbjct: 128 EKLL 131
>gnl|CDD|177041 CHL00118, atpG, ATP synthase CF0 B' subunit; Validated.
Length = 156
Score = 36.1 bits (84), Expect = 0.005
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 7 FLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHS 66
FL+ M L L I++Y LL LD + IR ++ +A + K+ + QY+++ S
Sbjct: 32 FLLLMVL---LNIILY----KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELS 84
Query: 67 KVEEETREIILAAKHRAK-ILAEE---GCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA 122
K +E + I ++ AK I+ E + I+ + K LE + K +A + L
Sbjct: 85 KARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQ----KEKALKSLEE 140
Query: 123 KIADFSVEIVREIISQ 138
++ S +I +++ +
Sbjct: 141 QVDTLSDQIEEKLLIK 156
>gnl|CDD|147540 pfam05405, Mt_ATP-synt_B, Mitochondrial ATP synthase B chain
precursor (ATP-synt_B). The Fo sector of the ATP
synthase is a membrane bound complex which mediates
proton transport. It is composed of nine different
polypeptide subunits (a, b, c, d, e, f, g F6, A6L).
Length = 163
Score = 33.4 bits (77), Expect = 0.033
Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 3 FDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYK 62
+E +V + I FL+ V PSI +LD +KI+D++ ++R L EK+ ++Y
Sbjct: 13 VNEETIVALCFIGFLIFVYKSLGPSIK-EWLDKRIEKIQDELNQSRNLHEKALKERIEYV 71
Query: 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA 122
+K V EET+ + +K + AE E +AL ++++ K+ + + + +
Sbjct: 72 KKLQSVVEETKVLFEVSKETVALEAEA--FERELQAALA-REIKSKLDTL-VRKESSVRQ 127
Query: 123 KIADFSVEIVREIISQKM-NDDVNSSIFEKTISSIQ 157
+ D V V + +++ +++I+ ++
Sbjct: 128 REQDHLVNWVISSVLKELSPPKFQKKSLQESIADLE 163
>gnl|CDD|153328 cd07644, I-BAR_IMD_BAIAP2L2, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Brain-specific
Angiogenesis Inhibitor 1-Associated Protein 2-Like 2.
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs
(I-BAR) domain, is a dimerization and lipid-binding
module that bends membranes and induces membrane
protrusions. This group is composed of uncharacterized
proteins known as BAIAP2L2 (Brain-specific Angiogenesis
Inhibitor 1-Associated Protein 2-Like 2). They contain
an N-terminal IMD, an SH3 domain, and a WASP homology 2
(WH2) actin-binding motif at the C-terminus. The related
proteins, BAIAP2L1 and IRSp53, function as regulators of
membrane dynamics and the actin cytoskeleton. The IMD
domain binds and bundles actin filaments, binds
membranes and produces membrane protrusions, and
interacts with the small GTPase Rac.
Length = 215
Score = 29.9 bits (67), Expect = 0.36
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 48 RRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAE 88
R +RE EN+ + + ++E R L K R + LAE
Sbjct: 144 RNVREMKENVNRLRQSMQAFLKESQRAAELEEKRRYRFLAE 184
>gnl|CDD|30902 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 29.0 bits (65), Expect = 0.64
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 36 HADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIE 95
+ADKI D + +A E+ I M Y E+H + ++ I E + +
Sbjct: 553 YADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEK 612
Query: 96 QISALYLKDLEQKIHYMKLEAKRLLYAKIADF 127
+ S + K+LE+ I KLE + AK +F
Sbjct: 613 KASKMSKKELEKLIK--KLEKEMKEAAKNLEF 642
>gnl|CDD|33705 COG3919, COG3919, Predicted ATP-grasp enzyme [General function
prediction only].
Length = 415
Score = 28.4 bits (63), Expect = 1.1
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 23 LRIPSILLS---FLDAHADKIRDDIFEARRLREKSENILMQYKEKHSK-----VEEETRE 74
+P + LS L ++ +R E + L + EKH V E
Sbjct: 25 EFVPVLALSADGPLPTYSRIVRVTTHWNGPHDEGAIAFLRDFAEKHGLKGYLLVACGDGE 84
Query: 75 IILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVR 133
++L +++R E++SA + L L K LLY + + + +
Sbjct: 85 VLLVSQYR------------EELSAFFEVPLPDWALLRWLCEKPLLYNRAEELGLPYPK 131
>gnl|CDD|34099 COG4392, COG4392, Predicted membrane protein [Function unknown].
Length = 107
Score = 26.3 bits (58), Expect = 4.9
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 6 TFLVFMSLIIFLVIVVYLRIPSILLSFL 33
+ ++ ++ L++++ LR+P + FL
Sbjct: 14 GAVTYLPRMLPLILLLKLRLPPWVRRFL 41
>gnl|CDD|143864 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 26.1 bits (58), Expect = 5.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 6 TFLVFMSLIIFLVIVVYLRIP 26
FLVF L++ ++ V+ +P
Sbjct: 415 VFLVFAGLLVLFILFVFFFVP 435
>gnl|CDD|35484 KOG0263, KOG0263, KOG0263, Transcription initiation factor TFIID,
subunit TAF5 (also component of histone
acetyltransferase SAGA) [Transcription].
Length = 707
Score = 26.1 bits (57), Expect = 5.7
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 13/146 (8%)
Query: 2 HFDETFLVFMSLIIFLVIVVYL-----RIPSILLSFLDAHADKIRDDIFEARRLREKSEN 56
+++ +S F +++ +L +I++ ++ H D D+F+ R ++
Sbjct: 197 FRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLD---IDVFDGVMARRTTKP 253
Query: 57 ILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEA 116
M E+ S E REI +L EE + L ++D +
Sbjct: 254 TAMVGSEQESIAGEAKREINKQKVQLGLLLKEE-EIEKKLPILLEVEDDPNE----PDNE 308
Query: 117 KRLLYAKIADFSVEIVREIISQKMND 142
K K S E R+ + +
Sbjct: 309 KLKKPKKKKLLSEEKKRDPNAPSRDR 334
>gnl|CDD|37145 KOG1934, KOG1934, KOG1934, Predicted membrane protein (patched
superfamily) [General function prediction only].
Length = 868
Score = 25.6 bits (56), Expect = 7.2
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 5 ETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEK 64
+ F + L++ L ++ L ++LS K + A R SE ++
Sbjct: 802 QVFFKTVVLVVTLGLLHGLVFLPVILSLFPPIKKKCKRKKRAAASPRSSSEESEIKEIPS 861
Query: 65 HSKVE 69
+V
Sbjct: 862 GDQVV 866
>gnl|CDD|36577 KOG1363, KOG1363, KOG1363, Predicted regulator of the ubiquitin
pathway (contains UAS and UBX domains) [Signal
transduction mechanisms].
Length = 460
Score = 25.7 bits (56), Expect = 7.2
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 38 DKIRDDIFEARRLR--EKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIE 95
D EA R+R E + EK K EEE RE L E + E
Sbjct: 322 DDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSASEE 381
Query: 96 QISALYLKD 104
+ + ++
Sbjct: 382 EAITVAIRL 390
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.135 0.360
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,957,851
Number of extensions: 100377
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 58
Length of query: 173
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,383,754
Effective search space: 377002844
Effective search space used: 377002844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)