RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (173 letters)



>gnl|CDD|169691 PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated.
          Length = 159

 Score =  107 bits (268), Expect = 2e-24
 Identities = 48/156 (30%), Positives = 95/156 (60%)

Query: 3   FDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYK 62
            D TF  F+ L++FL +VVYL++P ++   LDA AD+I++++ EARRLRE+++ +L +Y+
Sbjct: 1   MDATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQ 60

Query: 63  EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA 122
            K  + E+E  +I+ AA+  A+ L  E  +  E+  A   K  EQKI   + +A   + +
Sbjct: 61  RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRS 120

Query: 123 KIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQS 158
              D ++    +++++K++    S +F+  ++ +++
Sbjct: 121 SAVDLAIAAAEKLLAEKVDAKAASELFKDALAQVKT 156


>gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional.
          Length = 184

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 1/143 (0%)

Query: 7   FLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHS 66
           F+V ++ ++F+ I+VY ++P ++   LD  A+ IR ++ EAR LRE+++ +L  Y+ K  
Sbjct: 30  FVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQR 89

Query: 67  KVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIAD 126
           +V+E+   I+ AAK  A+  AE+   ++E   A  L   E +I   +  A + +  +   
Sbjct: 90  EVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVS 149

Query: 127 FSVEIVREIISQKMN-DDVNSSI 148
            +V    ++I+++M   D N+ I
Sbjct: 150 VAVAAAADVIAKQMTAADANALI 172


>gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional.
          Length = 167

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 7   FLVFMSLIIFLVIVVYLRI-PSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
           F V   L+IF  I++ L++ P  L   LDA+A KI+ ++ EA+RLRE+++ +L   K + 
Sbjct: 12  FWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAER 71

Query: 66  SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125
            + E +   ++ AAK  A+ +  E  + +E+      +  E+KI   + +A   + A   
Sbjct: 72  EEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAV 131

Query: 126 DFSVEIVREIISQKM 140
           D + +    +++ ++
Sbjct: 132 DLAAQAAETVLAARL 146


>gnl|CDD|139585 PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional.
          Length = 173

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 10/155 (6%)

Query: 8   LVFMSLIIFLVIVVYLRIPS--ILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
           LV  +L+ FLV+V+ L+  +  ++L  LD  A  +++DI +A  LR ++E +L  Y+ + 
Sbjct: 18  LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77

Query: 66  SKVEEETREIILAAKHRA----KILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLY 121
           +  ++E   I+  AK  A      L EE    ++      +K++E      K +A   L 
Sbjct: 78  NSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE----LAKGKALSQLQ 133

Query: 122 AKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156
            +I + ++ I  +++ +++  +   +  E  ++ +
Sbjct: 134 NQIVEMTITIASKVLEKQLKKEDYKAFIETELAKL 168


>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.
          Length = 156

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 1   MHFDETFLVFMSLIIFLVIVVYLR---IPSILLSFLDAHADKIRDDIFEARRLREKSENI 57
           M+ + T +    LI FL++V ++     P I+   L+    KI D +  A R +++ E  
Sbjct: 1   MNLNGTLIG--QLIAFLILVWFIMKFVWPPIM-KALEERQKKIADGLAAAERAKKELELA 57

Query: 58  LMQYKEKHSKVEEETREIILAAKHRA-KILAE---EGCQNIEQISALYLKDLEQKIHYMK 113
             +Y+ + ++   E  EII  AK RA +I+ E   E      +I A    ++EQ+     
Sbjct: 58  QAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERK--- 114

Query: 114 LEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156
             A+  L  ++AD +V    +I+ ++++    S + +K I+ +
Sbjct: 115 -RAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL 156


>gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional.
          Length = 175

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 33/153 (21%), Positives = 74/153 (48%), Gaps = 2/153 (1%)

Query: 8   LVFMSLIIFLVIVVYLRIPSI--LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
           L+F + + F+++++ L+  +   +LS L+     I+  I  A   ++++E IL + +E  
Sbjct: 20  LIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79

Query: 66  SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125
           +K + E  +II   K  A+ L  E  +     +   +   +++I   K  A  +L  ++A
Sbjct: 80  AKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVA 139

Query: 126 DFSVEIVREIISQKMNDDVNSSIFEKTISSIQS 158
           D +V+   +II   ++ D    + +  I  + +
Sbjct: 140 DLAVKGAEKIIRTSLDADKQKKVVDSMIQDLST 172


>gnl|CDD|168615 PRK06568, PRK06568, F0F1 ATP synthase subunit B; Validated.
          Length = 154

 Score = 35.3 bits (81), Expect = 0.008
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHF-DETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILM 59
           M+F DE+F + +S +IF V ++Y      +L+ LDA   ++++ + +A +L+E +  +  
Sbjct: 1   MNFLDESFWLAVSFVIF-VYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFE 59

Query: 60  QYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRL 119
           Q   +  K+E    ++I  +    K + +E  + IE+       D  Q I   K  A + 
Sbjct: 60  QTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKE 119

Query: 120 LYAKIADFSVEIVRE 134
           L  +  D  +++V E
Sbjct: 120 LQDEFCDEVIKLVSE 134


>gnl|CDD|169692 PRK09174, PRK09174, F0F1 ATP synthase subunit B'; Validated.
          Length = 204

 Score = 34.0 bits (78), Expect = 0.019
 Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 6   TFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
           TF +F    +F+  V+  RI  I+    +   D+I  D+ +A RL+++++  +  Y+++ 
Sbjct: 62  TFGLFY---LFMSRVILPRIGGII----ETRRDRIAQDLDQAARLKQEADAAVAAYEQEL 114

Query: 66  SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125
           ++   +   I  AA+  AK  AE     IE      LK+ E +I  +K +A   + +   
Sbjct: 115 AQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAE 174

Query: 126 DFSVEIVREIISQKMND-DVNSSI 148
           + +  IV ++I    +   V +++
Sbjct: 175 ETAAAIVEQLIGGTADKASVAAAV 198


>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional.
          Length = 164

 Score = 34.1 bits (78), Expect = 0.019
 Identities = 32/155 (20%), Positives = 73/155 (47%), Gaps = 10/155 (6%)

Query: 8   LVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
           L+   LI FL+++  LR  +   +L+ L+    +I + + +A ++RE+  N    Y+ + 
Sbjct: 10  LLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAEL 69

Query: 66  SKVEEETREIILAAKHRAKILAEE----GCQNIEQISALYLKDLEQKIHYMKLEAKRLLY 121
           +K  +E  +I+  A+ RA+    E      +  E+I        EQ+   M  E K    
Sbjct: 70  AKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELK---- 125

Query: 122 AKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156
           ++IAD        ++  ++    + ++  ++++++
Sbjct: 126 SQIADLVTLTASRVLGAELQARGHDALIAESLAAL 160


>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B.  CC
           and in principle may run in either direction. This model
           represents the F0 subunit B of this apparent second ATP
           synthase.
          Length = 246

 Score = 32.3 bits (74), Expect = 0.069
 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 18/148 (12%)

Query: 1   MHFDETFLVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENIL 58
           M  D  F V   LI FL++V  L+  +   +L  +DA   KI  ++ +A   + ++E   
Sbjct: 1   MLID-WFTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQER 59

Query: 59  MQYKEKHS---------------KVEEETREIILAAKHRAKILAEEGCQNIEQISALYLK 103
            +Y+EK+                + + E + ++  A+  A  + E+  + + +  A    
Sbjct: 60  REYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSD 119

Query: 104 DLEQKIHYMKLEAKRLLYAKIADFSVEI 131
           +L ++         R +   +AD  +E 
Sbjct: 120 ELRRRTGAEVFAIARKVLTDLADTDLEE 147


>gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit.  This family is based
           on the phylogenomic analysis of JA Eisen (1999, Ph.D.
           Thesis, Stanford University).
          Length = 655

 Score = 31.1 bits (71), Expect = 0.17
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 36  HADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETR---EIILAAKHRAKILAEEGCQ 92
           +ADKI D + +A    E+   I M Y E+H    +  R     IL  + + K  A +  +
Sbjct: 549 YADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEKEDAAKKKK 608

Query: 93  NIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADF 127
             E +S L  K+L++ I   +LE +    A+  +F
Sbjct: 609 KGEDLSDLSKKELKKLIK--QLEKEMKQAARNLEF 641


>gnl|CDD|161881 TIGR00442, hisS, histidyl-tRNA synthetase.  This model finds a
           histidyl-tRNA synthetase in every completed genome.
           Apparent second copies from Bacillus subtilis,
           Synechocystis sp., and Aquifex aeolicus are slightly
           shorter, more closely related to each other than to
           other hisS proteins, and actually serve as regulatory
           subunits for an enzyme of histidine biosynthesis. They
           were excluded from the seed alignment and score much
           lower than do single copy histidyl-tRNA synthetases of
           other genomes not included in the seed alignment. These
           putative second copies of HisS score below the trusted
           cutoff. The regulatory protein kinase GCN2 of
           Saccharomyces cerevisiae (YDR283c), and related proteins
           from other species designated eIF-2 alpha kinase, have a
           domain closely related to histidyl-tRNA synthetase that
           may serve to detect and respond to uncharged tRNA(his),
           an indicator of amino acid starvation; these regulatory
           proteins are not orthologous and so score below the
           noise cutoff.
          Length = 397

 Score = 29.0 bits (66), Expect = 0.62
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 23  LRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHR 82
           L     LL +LD H DK+ +D    RRL +    IL     K     E+ +E++  A   
Sbjct: 169 LEYREALLRYLDKHLDKLGED--SVRRLEKNPLRIL---DSK----NEKIQELLKEAPKI 219

Query: 83  AKILAEEGCQNIEQISALYLKDL 105
              L EE   + E++    L  L
Sbjct: 220 LDFLDEESRAHFEELKE-LLDAL 241


>gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional.
          Length = 347

 Score = 28.9 bits (65), Expect = 0.77
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 123 KIADFSVEIVREIISQKMNDDV 144
            IA+   E V  I SQ MND+V
Sbjct: 65  DIANVKGEQVVNIGSQDMNDEV 86


>gnl|CDD|179204 PRK01005, PRK01005, V-type ATP synthase subunit E; Provisional.
          Length = 207

 Score = 27.8 bits (62), Expect = 1.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 69  EEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKI 109
           EEE   I+  AK +AK +  E  +  E+I     +  +QK+
Sbjct: 26  EEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKL 66


>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
          Length = 250

 Score = 27.9 bits (62), Expect = 1.4
 Identities = 26/141 (18%), Positives = 62/141 (43%), Gaps = 17/141 (12%)

Query: 7   FLVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEK 64
           F V   +I FL++V  LR  +   ++  +     +I +   +A + ++++     +Y++K
Sbjct: 6   FTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQK 65

Query: 65  HSKVEEETREIILAAK-----HRAKILAE----------EGCQNIEQISALYLKDLEQKI 109
              +E++    +  A+      R  +L E          E  + +E+    + K L+Q+ 
Sbjct: 66  QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQT 125

Query: 110 HYMKLEAKRLLYAKIADFSVE 130
               ++  R   A +A+ ++E
Sbjct: 126 GQQMVKIIRAALADLANATLE 146


>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
           protein; Reviewed.
          Length = 782

 Score = 27.5 bits (62), Expect = 1.7
 Identities = 13/52 (25%), Positives = 30/52 (57%)

Query: 46  EARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQI 97
           EA  L +++E +  + +EK  K++EE  +++  A+  A+   +E  +  ++I
Sbjct: 538 EAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEI 589


>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
          Length = 895

 Score = 27.6 bits (61), Expect = 1.7
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 52  EKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKI-H 110
           EKS +I+  Y EK S++EE+ REI    +   K + E+     ++   L  +++ + I  
Sbjct: 465 EKSNHIINHYNEKKSRLEEKIREI----EIEVKDIDEKIVDLKKRKEYLESEEINKSINE 520

Query: 111 YMKLEAKRLLYAKIADFSVEIVR 133
           Y K+E+ R   A + D  ++I  
Sbjct: 521 YNKIESAR---ADLEDIKIKINE 540


>gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
          Length = 499

 Score = 27.3 bits (61), Expect = 2.0
 Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 56  NILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISAL------YLKDLEQK 108
           N+   + E+ + + EE +   L  + R K L+E+     ++++A+      Y+   ++ 
Sbjct: 434 NLHTHFIEEETTILEEMKRYALEEEEREKTLSEKFFPGNKKVAAIAAAVNAYISSAKKD 492


>gnl|CDD|129024 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase.
           Adenylosuccinate synthetase plays an important role in
           purine biosynthesis, by catalyzing the GTP-dependent
           conversion of IMP and aspartic acid to AMP.
           Adenylosuccinate synthetase has been characterized from
           various sources ranging from Escherichia coli (gene
           purA) to vertebrate tissues. In vertebrates, two
           isozymes are present - one involved in purine
           biosynthesis and the other in the purine nucleotide
           cycle. The crystal structure of adenylosuccinate
           synthetase from E. coli reveals that the dominant
           structural element of each monomer of the homodimer is a
           central beta-sheet of 10 strands. The first nine strands
           of the sheet are mutually parallel with right-handed
           crossover connections between the strands. The 10th
           strand is antiparallel with respect to the first nine
           strands. In addition, the enzyme has two antiparallel
           beta-sheets, comprised of two strands and three strands
           each, 11 alpha-helices and two short 3/10-helices.
           Further, it has been suggested that the similarities in
           the GTP-binding domains of the synthetase and the p21ras
           protein are an example of convergent evolution of two
           distinct families of GTP-binding proteins
           PUBMED:8244965. Structures of adenylosuccinate
           synthetase from Triticum aestivum and Arabidopsis
           thaliana when compared with the known structures from E.
           coli reveals that the overall fold is very similar to
           that of the E. coli protein PUBMED:10669609.
          Length = 421

 Score = 27.4 bits (62), Expect = 2.1
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 35  AHADK-----IR-DDIFEARRLREKSENILMQYK---EKHSKVEEETREIILA 78
           A+ DK     IR  D+F+    REK E +L       +K    E    E IL 
Sbjct: 134 AYEDKVARRGIRVGDLFDEDVFREKLEELLDYKNFLLKKLYGAEPVDVEEILE 186


>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
          Length = 175

 Score = 27.1 bits (61), Expect = 2.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 9/47 (19%)

Query: 100 LYLKDLEQKIHYMKLEAKRLLYAKIADFSV--------EIVREIISQ 138
           L   D ++K+  +  E +  LY ++AD +V        E+V EI+ +
Sbjct: 123 LQTNDPKEKLRDL-YEERDPLYEEVADITVETDGRSPEEVVNEILEK 168


>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
          Length = 567

 Score = 26.8 bits (59), Expect = 3.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 45 FEARRLREKSENILMQYKEK-HSKVEEETREIILAAKHRAKILAEEGCQNIEQISA 99
          FE RR REK E    + K++   K+E E +    AAK R  I A +  + ++ I A
Sbjct: 3  FELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEA 58


>gnl|CDD|140235 PTZ00208, PTZ00208, 65 kDa invariant surface glycoprotein;
           Provisional.
          Length = 436

 Score = 26.9 bits (59), Expect = 3.1
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 22/107 (20%)

Query: 44  IFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLK 103
           I   R       N   ++ + + K+ +E    +   KH A  +AEE    ++        
Sbjct: 10  IIATRIPVLLVANSGDKHVKANKKLTKEGAAALCKMKHLADKVAEERADKLK-------D 62

Query: 104 DLEQKIHYMKLEAKRLL---------------YAKIADFSVEIVREI 135
             +    Y++ E  RL                YAK++D   E V+EI
Sbjct: 63  RTQNFAGYIEFELDRLDYWLEKLNGPKHSNDGYAKLSDSDTEKVKEI 109


>gnl|CDD|180496 PRK06264, cbiC, precorrin-8X methylmutase; Validated.
          Length = 210

 Score = 25.8 bits (57), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 124 IADFSVEIVREIISQKMNDDVNS 146
           IA+ S EIV+  I + + D +  
Sbjct: 11  IANKSREIVKNKIKEVLGDKIKL 33


>gnl|CDD|179408 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
          Length = 188

 Score = 25.7 bits (57), Expect = 6.2
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 69  EEETREIILAAKHRAK-ILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKR 118
           +EE  EII  A+  A+ IL +   +   +I  L     EQ++   KLEAKR
Sbjct: 26  DEEAEEIIAEAEADAEEILEDREAEAEREIEQLR----EQELSSAKLEAKR 72


>gnl|CDD|151434 pfam10987, DUF2806, Protein of unknown function (DUF2806).  This
           bacterial family of proteins has no known function.
          Length = 223

 Score = 25.3 bits (56), Expect = 7.3
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 79  AKHRAKILAEEGCQNIEQISALYLKDLEQ 107
           A  R +I      QN+E I AL L     
Sbjct: 4   AAKRQQIQELRKQQNLESIVALALNYCPS 32


>gnl|CDD|168917 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
          Length = 140

 Score = 25.3 bits (56), Expect = 8.4
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 33 LDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEE 89
          ++   D IR +  EA+    ++E +  QY+++ +   ++ + +I  A+  A  LA E
Sbjct: 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAE 90


>gnl|CDD|163099 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
           protein, PEP-CTERM locus subfamily.  Members of this
           protein family belong to the family of polysaccharide
           chain length determinant proteins (pfam02706). All are
           found in species that encode the PEP-CTERM/exosortase
           system predicted to act in protein sorting in a number
           of Gram-negative bacteria, and are found near the epsH
           homolog that is the putative exosortase gene.
          Length = 498

 Score = 25.0 bits (55), Expect = 9.6
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 17/117 (14%)

Query: 50  LREKSENILMQYKEKHSKVEEETREI-ILAAKHRAKILAEEGCQNIEQISALYLKDLEQK 108
           L ++ + + ++Y +KH  V    REI  L  +   +  A+ G     +I+    + L+  
Sbjct: 259 LEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQ-- 316

Query: 109 IHYMKLEAK-RLLYAKIADFSVEI------VREI------ISQKMND-DVNSSIFEK 151
           I   + EA+   L A++A+ +  I      +R I      ++Q   D +VN S +E+
Sbjct: 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ 373


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.135    0.360 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,720,283
Number of extensions: 172615
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 80
Length of query: 173
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,114,577
Effective search space: 353853622
Effective search space used: 353853622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)