BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (173 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 173

 Score =  348 bits (892), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MHFDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQ 60
           MHFDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQ
Sbjct: 1   MHFDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQ 60

Query: 61  YKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLL 120
           YKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLL
Sbjct: 61  YKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLL 120

Query: 121 YAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQMDKNTTETLGSQ 173
           YAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQMDKNTTETLGSQ
Sbjct: 121 YAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQMDKNTTETLGSQ 173


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 32.3 bits (72), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 16/102 (15%)

Query: 36  HADKIRDDIFEARRLREKSENILM------QYKEKHSKVEEETREIILAAKHRAKILAEE 89
           H   IR D+ EA  LR +++N+L          E  S  + E  + +L+AK   +ILA E
Sbjct: 547 HDRDIRHDLIEAI-LRPENDNLLTIVDLIKHLNEFFSSAKGE--KFLLSAKRIFQILAIE 603

Query: 90  GCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEI 131
             +N  +IS      LE    Y+ LEA++ LYA I+DF   I
Sbjct: 604 EKKN-REIS------LEISPQYLLLEAEKRLYAVISDFGTHI 638


>gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 210

 Score = 22.7 bits (47), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 19/116 (16%)

Query: 41  RDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISAL 100
           +DD+   +  +E+++N L +++     + EE +E I     + K+         E + A 
Sbjct: 100 QDDLL-VKEQKERAQNALSEFEASPCPLIEEGKEPIFENSIQPKV---------EDV-AF 148

Query: 101 YLKDL--EQKIHYMKLEAKR------LLYAKIADFSVEIVREIISQKMNDDVNSSI 148
              D+  E+ + Y K+  +R         AK  +  VE    I+ Q++N D  SS+
Sbjct: 149 KTPDISREKDVSYKKVRRRRPLRPRVFPNAKSGNQPVEATETIVPQELNSDNASSV 204


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 21.9 bits (45), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 33  LDAHADKIRDDIFEA-----RRLREKSENILMQYKEKHSKVE 69
           L AHA  +   I  A      R  E S+NI+  Y   ++K+E
Sbjct: 667 LKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLE 708


>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 692

 Score = 21.6 bits (44), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 10 FMSLIIFLVIVVYLRIPSILL 30
          F   I+ ++ +++L IP++LL
Sbjct: 22 FSFCIVLIICILFLPIPTVLL 42


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.135    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,347
Number of Sequences: 1233
Number of extensions: 3758
Number of successful extensions: 16
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 11
length of query: 173
length of database: 328,796
effective HSP length: 68
effective length of query: 105
effective length of database: 244,952
effective search space: 25719960
effective search space used: 25719960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)