HHsearch alignment for GI: 254781086 and conserved domain: CHL00019
>CHL00019 atpF ATP synthase CF0 B subunit.
Probab=99.95 E-value=3.3e-25 Score=175.58 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=154.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34689988598876889999999999999999999554089999999999999999999999999999999999999999
Q gi|254781086|r 8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIAR 87 (176)
Q Consensus 8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak 87 (176)
T Consensus 15 ~~~~~f-g~N~niletnl----INl~Ivi~iL~~f~~~~L~~~L~~R~~~I~~~I~eAE~~~~eA~~~L~e~~~~L~~A~ 89 (184)
T CHL00019 15 PSAGSF-GFNTDILETNL----INLSVVLGVLIYFGKGVLSDLLDNRKQRILNTIRNSEERREEAIEKLEKARARLRQAE 89 (184)
T ss_pred CCCCCC-CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 556667-76740999999----9999999999999599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999-98415999999999
Q gi|254781086|r 88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKIL 166 (176)
Q Consensus 88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i 166 (176)
T Consensus 90 ~eA~~I~~~A~~~ae~~k~~i~~~a~~e~erl~~~A~~~I~~E~~kA~~elr~ev~~lAl~~a~k~L~~~Ld~~~q~~LI 169 (184)
T CHL00019 90 IEADEIRVNGYSEIEREKLNLINSTYEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTI 169 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999998664999999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999421069
Q gi|254781086|r 167 DRKRDGIDAF 176 (176)
Q Consensus 167 ~~~~~~i~~~ 176 (176)
T Consensus 170 d~~I~~LG~~ 179 (184)
T CHL00019 170 DANIGLLGAM 179 (184)
T ss_pred HHHHHHHHCC
T ss_conf 9999987162