HHsearch alignment for GI: 254781086 and conserved domain: PRK06937
>PRK06937 type III secretion system protein; Reviewed.
Probab=95.05 E-value=0.28 Score=27.77 Aligned_cols=100 Identities=18% Similarity=0.087 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF 155 (176)
Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~ 155 (176)
T Consensus 29 ~~~A~~ile~A~~~A~~i~~~A~~~~e~~~~~Gy~eG~~ea~~e~ae~i~~~~~~~~~~~~~le~~l~~lv~~av~kIlg 108 (204)
T PRK06937 29 LLSAEELVEAARQRAAEIEAEAREVYEQQKQLGYEAGLDEARTEQAELILETVLQCQEFYRGIEQQMSEVVLEAVRKILN 108 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 84399999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred HCCHH-HHHHHHHHHHHHHHC
Q ss_conf 15999-999999999942106
Q gi|254781086|r 156 SVSDA-DVQKILDRKRDGIDA 175 (176)
Q Consensus 156 ~~~~~-~~~~~i~~~~~~i~~ 175 (176)
T Consensus 109 ~~d~~el~~~~v~~al~~v~~ 129 (204)
T PRK06937 109 DYDDVERTLQVVREALALVSN 129 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHC
T ss_conf 468389999999999999735