HHsearch alignment for GI: 254781086 and conserved domain: TIGR02926
>TIGR02926 AhaH ATP synthase archaeal, H subunit; InterPro: IPR014275 A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents subunit H of the archaeal A-ATPase; it is unclear precisely where subunit H fits into the complex. More information about this protein can be found at Protein of the Month: ATP Synthases ..
Probab=95.70 E-value=0.17 Score=29.10 Aligned_cols=69 Identities=28% Similarity=0.344 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999----999999999999999999999999999
Q gi|254781086|r 68 AKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQR----EVFEKDLLHKLSNAQNEIDDMQKKASQ 136 (176)
Q Consensus 68 ~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~----~~a~~ei~~~~~~a~~~I~~~k~~a~~ 136 (176)
T Consensus 11 A~~~i~eA~~~~~~~i~eAr~eA~~l~e~Ae~eA~~~~~e~i~~a~~~i~~E~~~I~~~~eke~e~~~~~A~~ 83 (85)
T TIGR02926 11 AEELIEEAKEEREQRIAEAREEAKELLEEAEEEAKKLKEEIIEEAEEEIEKEAEKILEEGEKEIEELKSKAKE 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999898999998668999899888889988988999988889999999987999886655639999996043