Query         gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs    127 out of 1799
Neff          8.1 
Searched_HMMs 39220
Date          Mon May 30 05:47:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781086.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK13454 F0F1 ATP synthase sub 100.0 2.1E-42       0  281.8  24.3  170    3-172    12-181 (181)
  2 PRK09174 F0F1 ATP synthase sub 100.0 4.8E-39 1.2E-43  261.1  24.3  161   10-170    41-202 (204)
  3 PRK06569 F0F1 ATP synthase sub 100.0   1E-33 2.6E-38  228.2  22.8  153   13-165     1-154 (157)
  4 PRK13455 F0F1 ATP synthase sub 100.0 2.6E-31 6.6E-36  213.3  23.6  169    1-175    10-181 (184)
  5 PRK13460 F0F1 ATP synthase sub 100.0   1E-30 2.6E-35  209.7  24.5  165   10-176     6-171 (173)
  6 PRK06231 F0F1 ATP synthase sub 100.0 3.8E-30 9.8E-35  206.1  24.7  165   10-174    29-201 (201)
  7 PRK07352 F0F1 ATP synthase sub 100.0 1.7E-29 4.4E-34  202.1  24.1  165    6-175     8-173 (174)
  8 PRK13453 F0F1 ATP synthase sub 100.0 1.5E-28 3.9E-33  196.2  23.5  156   15-174    15-171 (173)
  9 PRK13461 F0F1 ATP synthase sub 100.0 3.9E-28 9.8E-33  193.7  24.6  156   15-174     2-158 (159)
 10 PRK05759 F0F1 ATP synthase sub 100.0 4.7E-27 1.2E-31  187.0  24.3  154   15-173     2-156 (156)
 11 PRK09173 F0F1 ATP synthase sub 100.0 3.6E-27 9.2E-32  187.7  23.6  151   25-175     4-156 (159)
 12 CHL00118 atpG ATP synthase CF0 100.0 1.6E-27   4E-32  189.9  21.7  147    4-155     9-155 (156)
 13 CHL00019 atpF ATP synthase CF0 100.0 3.3E-25 8.5E-30  175.6  24.3  164    8-176    15-179 (184)
 14 COG0711 AtpF F0F1-type ATP syn  99.9 6.1E-25 1.5E-29  174.0  24.0  151   25-175     9-160 (161)
 15 PRK13428 F0F1 ATP synthase sub  99.9 1.5E-24 3.8E-29  171.6  23.1  151   25-175     4-156 (445)
 16 PRK08476 F0F1 ATP synthase sub  99.9 1.1E-24 2.8E-29  172.4  21.8  138   13-154     2-139 (141)
 17 PRK07353 F0F1 ATP synthase sub  99.9 1.5E-24 3.8E-29  171.5  21.8  139   13-156     1-139 (140)
 18 TIGR01144 ATP_synt_b ATP synth  99.9 3.5E-24 8.9E-29  169.3  21.2  145   29-173     2-147 (147)
 19 CHL00167 consensus              99.9 5.3E-22 1.3E-26  155.8  24.6  165    6-175    15-180 (182)
 20 pfam00430 ATP-synt_B ATP synth  99.9 2.9E-22 7.4E-27  157.4  20.9  131   25-155     2-132 (132)
 21 TIGR03321 alt_F1F0_F0_B altern  99.9   1E-21 2.6E-26  154.0  23.6  156   15-174     2-158 (246)
 22 PRK06568 F0F1 ATP synthase sub  99.9 1.1E-20 2.7E-25  147.8  20.6  145   20-164     2-148 (154)
 23 PRK08475 F0F1 ATP synthase sub  99.8 6.9E-19 1.8E-23  136.6  20.3  140   24-166    26-165 (170)
 24 pfam02326 YMF19 Plant ATP synt  99.3 4.3E-12 1.1E-16   94.6   7.5   71   14-86      1-71  (84)
 25 PRK06231 F0F1 ATP synthase sub  99.1 8.6E-08 2.2E-12   68.0  20.9  148   12-168    44-199 (201)
 26 PRK09173 F0F1 ATP synthase sub  99.0 4.3E-07 1.1E-11   63.7  21.6  149   16-173     1-158 (159)
 27 pfam05405 Mt_ATP-synt_B Mitoch  99.0 1.6E-06   4E-11   60.2  21.5  145   26-173    17-162 (163)
 28 PRK13453 F0F1 ATP synthase sub  99.0 2.4E-06 6.1E-11   59.1  22.4  140   24-170    24-171 (173)
 29 PRK13460 F0F1 ATP synthase sub  98.9 2.1E-06 5.4E-11   59.4  21.2  148   14-170    14-169 (173)
 30 PRK07352 F0F1 ATP synthase sub  98.8   5E-06 1.3E-10   57.2  19.6  155    4-169     9-171 (174)
 31 PRK13461 F0F1 ATP synthase sub  98.8 2.1E-05 5.3E-10   53.3  21.9  138   24-168    11-156 (159)
 32 pfam00430 ATP-synt_B ATP synth  98.6 5.4E-05 1.4E-09   50.7  20.2  124   20-150     1-131 (132)
 33 PRK13454 F0F1 ATP synthase sub  98.6   7E-05 1.8E-09   50.1  20.0  157    6-171    12-176 (181)
 34 PRK05759 F0F1 ATP synthase sub  98.5 9.5E-05 2.4E-09   49.2  21.8  138   24-168    10-155 (156)
 35 CHL00118 atpG ATP synthase CF0  98.5 7.7E-05   2E-09   49.8  18.8  116   26-149    23-138 (156)
 36 PRK13455 F0F1 ATP synthase sub  98.5 0.00012 3.1E-09   48.6  20.8  137   30-173    38-183 (184)
 37 PRK09174 F0F1 ATP synthase sub  98.4 0.00018 4.7E-09   47.5  21.0  150   14-172    42-200 (204)
 38 CHL00019 atpF ATP synthase CF0  98.3 0.00028   7E-09   46.4  20.0  134   29-169    35-176 (184)
 39 PRK08475 F0F1 ATP synthase sub  98.3 0.00018 4.6E-09   47.5  17.2  108   21-128    27-141 (170)
 40 TIGR01144 ATP_synt_b ATP synth  98.3 0.00031   8E-09   46.0  19.7  137   24-168     1-146 (147)
 41 PRK08476 F0F1 ATP synthase sub  98.3 0.00035 8.9E-09   45.8  19.8   86   64-153    42-127 (141)
 42 MTH00169 ATP8 ATP synthase F0   98.3 2.8E-06 7.2E-11   58.7   6.8   50   13-62      1-50  (71)
 43 PRK06568 F0F1 ATP synthase sub  98.2 0.00046 1.2E-08   45.0  20.3  117   13-131     1-124 (154)
 44 COG0711 AtpF F0F1-type ATP syn  98.2  0.0007 1.8E-08   43.9  21.3  147   15-168     3-157 (161)
 45 PRK07353 F0F1 ATP synthase sub  98.1   0.001 2.6E-08   42.8  20.8  120   24-150    11-137 (140)
 46 MTH00025 ATP8 ATP synthase F0   98.0   2E-05   5E-10   53.4   5.9   49   13-61      1-49  (70)
 47 CHL00167 consensus              97.8  0.0036 9.1E-08   39.5  19.8  132   29-167    37-176 (182)
 48 PRK06569 F0F1 ATP synthase sub  97.7  0.0041 1.1E-07   39.1  18.9  133   26-166     8-142 (157)
 49 PRK01005 V-type ATP synthase s  97.7  0.0049 1.3E-07   38.6  15.8  102   69-174    19-123 (208)
 50 PRK02292 V-type ATP synthase s  97.6  0.0064 1.6E-07   37.9  15.9   99   74-173    13-112 (187)
 51 PRK01005 V-type ATP synthase s  97.5   0.006 1.5E-07   38.1  13.2   52   76-127    37-88  (208)
 52 PRK01558 V-type ATP synthase s  97.4   0.011 2.7E-07   36.6  16.1  100   69-172    14-114 (198)
 53 pfam05933 Fun_ATP-synt_8 Funga  97.3 0.00024 6.2E-09   46.7   3.9   43   13-55      1-43  (47)
 54 TIGR03321 alt_F1F0_F0_B altern  97.3   0.015 3.9E-07   35.6  19.9   96   29-124    16-122 (246)
 55 PRK13428 F0F1 ATP synthase sub  97.2   0.018 4.6E-07   35.2  20.3  143   19-168     2-153 (445)
 56 PRK03963 V-type ATP synthase s  96.7   0.052 1.3E-06   32.3  15.4   51   75-125    15-65  (198)
 57 PRK01558 V-type ATP synthase s  96.7   0.054 1.4E-06   32.2  13.3   53   76-128    32-84  (198)
 58 PRK02292 V-type ATP synthase s  96.7   0.054 1.4E-06   32.2  13.2   76   78-153    28-108 (187)
 59 PRK00106 hypothetical protein;  96.7   0.055 1.4E-06   32.2  20.2   85   23-115     6-91  (535)
 60 PRK00409 recombination and DNA  96.5   0.067 1.7E-06   31.6  15.8   70   51-120   523-592 (780)
 61 PRK12705 hypothetical protein;  96.5   0.067 1.7E-06   31.6  22.2   61   13-73      1-63  (485)
 62 PRK06328 type III secretion sy  96.5   0.068 1.7E-06   31.6  16.0  101   74-174    26-129 (223)
 63 KOG3976 consensus               96.5   0.069 1.8E-06   31.6  20.5   77   28-104   100-176 (247)
 64 PRK03963 V-type ATP synthase s  96.4   0.076 1.9E-06   31.3  13.1   51   81-131    10-60  (198)
 65 TIGR02926 AhaH ATP synthase ar  96.4   0.083 2.1E-06   31.1  12.0   76   72-147     4-79  (85)
 66 PRK00409 recombination and DNA  96.4   0.086 2.2E-06   31.0  13.1  121   10-132   462-589 (780)
 67 COG2811 NtpF Archaeal/vacuolar  96.3   0.096 2.4E-06   30.7  15.2   73   74-146    14-86  (108)
 68 pfam03179 V-ATPase_G Vacuolar   96.2     0.1 2.7E-06   30.4  12.0   54   82-135     8-61  (105)
 69 COG2811 NtpF Archaeal/vacuolar  96.0    0.13 3.4E-06   29.8  14.4   80   68-147    19-103 (108)
 70 pfam01991 vATP-synt_E ATP synt  95.7    0.17 4.4E-06   29.1  12.9   40   78-117     9-48  (195)
 71 TIGR02926 AhaH ATP synthase ar  95.7    0.17 4.4E-06   29.1   9.5   69   68-136    11-83  (85)
 72 TIGR01147 V_ATP_synt_G V-type   95.3    0.24 6.1E-06   28.2  11.6   91   81-171    10-102 (114)
 73 PRK08404 V-type ATP synthase s  95.1    0.28   7E-06   27.8  14.7   66   75-140    25-94  (106)
 74 PRK06937 type III secretion sy  95.1    0.28 7.2E-06   27.8  15.9  100   76-175    29-129 (204)
 75 COG1390 NtpE Archaeal/vacuolar  95.0     0.3 7.6E-06   27.6  15.1   97   76-172    16-116 (194)
 76 KOG1772 consensus               94.7    0.36 9.2E-06   27.1  12.3   48   82-129    10-57  (108)
 77 pfam00895 ATP-synt_8 ATP synth  94.2   0.049 1.2E-06   32.5   3.3   20   13-32      1-20  (55)
 78 PRK08404 V-type ATP synthase s  94.2    0.46 1.2E-05   26.5  13.5   67   75-141    14-80  (106)
 79 PRK01194 V-type ATP synthase s  94.1    0.48 1.2E-05   26.4  15.9   98   76-173    15-117 (185)
 80 PRK00083 frr ribosome recyclin  93.8    0.32 8.1E-06   27.5   6.9   83   41-126    99-181 (185)
 81 cd00520 RRF Ribosome recycling  93.2    0.49 1.2E-05   26.3   7.0   83   41-126    95-177 (179)
 82 COG1390 NtpE Archaeal/vacuolar  93.0    0.74 1.9E-05   25.2  14.8   56   82-137    11-66  (194)
 83 MTH00102 ATP8 ATP synthase F0   92.8     0.1 2.6E-06   30.5   3.0   23   13-35      1-23  (67)
 84 KOG0718 consensus               92.6    0.84 2.1E-05   24.9   9.5   39   16-54    368-406 (546)
 85 PRK09098 type III secretion sy  92.1    0.96 2.5E-05   24.5  17.5   97   72-168    34-142 (229)
 86 PRK06669 fliH flagellar assemb  92.0    0.99 2.5E-05   24.4  17.8  107   69-175    83-196 (268)
 87 TIGR02499 HrpE_YscL_not type I  91.2     1.2 3.1E-05   23.9  15.9   97   77-173    17-120 (183)
 88 COG0233 Frr Ribosome recycling  91.1     1.2 3.1E-05   23.9   8.3   84   41-127   101-184 (187)
 89 pfam06936 Selenoprotein_S Sele  91.0     1.2 3.2E-05   23.8  10.1   28   20-47     31-58  (190)
 90 COG1862 YajC Preprotein transl  90.9    0.47 1.2E-05   26.4   4.7   35   21-59      8-42  (97)
 91 MTH00036 ATP8 ATP synthase F0   89.9    0.39 9.8E-06   26.9   3.5   13   13-25      1-13  (53)
 92 TIGR01846 type_I_sec_HlyB type  89.9    0.47 1.2E-05   26.4   3.9   37   20-56    282-318 (703)
 93 TIGR02956 TMAO_torS TMAO reduc  89.6     1.6 4.2E-05   23.1  17.5   95   25-119   374-484 (1052)
 94 TIGR03319 YmdA_YtgF conserved   89.2     1.8 4.5E-05   22.9  23.7   43   25-67      5-47  (514)
 95 TIGR00739 yajC preprotein tran  88.7    0.53 1.3E-05   26.1   3.5   22   21-42      2-23  (86)
 96 pfam06188 HrpE HrpE protein. T  88.4       2 5.1E-05   22.5  15.9   95   76-170    29-124 (191)
 97 MTH00133 ATP8 ATP synthase F0   88.1    0.53 1.4E-05   26.1   3.2   10   13-22      1-10  (55)
 98 pfam06103 DUF948 Bacterial pro  87.7     2.2 5.6E-05   22.3  10.9   65   27-92      5-69  (90)
 99 MTH00171 ATP8 ATP synthase F0   87.5    0.55 1.4E-05   26.0   3.0   11   13-23      1-11  (54)
100 PRK05585 yajC preprotein trans  87.3     1.4 3.5E-05   23.5   4.9   31   23-57     20-50  (107)
101 MTH00123 ATP8 ATP synthase F0   86.7    0.57 1.5E-05   25.9   2.7   13   13-25      1-13  (55)
102 MTH00122 consensus              86.7    0.54 1.4E-05   26.0   2.6   10   13-22      1-10  (55)
103 MTH00072 ATP8 ATP synthase F0   86.6    0.79   2E-05   25.0   3.3   10   13-22      1-10  (55)
104 pfam01765 RRF Ribosome recycli  85.9     2.8   7E-05   21.7   8.8   83   41-126    81-163 (165)
105 pfam05103 DivIVA DivIVA protei  83.8     3.4 8.7E-05   21.1  14.9   70   56-129    42-111 (131)
106 TIGR03142 cytochro_ccmI cytoch  83.6     3.5 8.9E-05   21.0   6.1   53   25-91      1-53  (117)
107 pfam04100 Vps53_N Vps53-like,   83.2     3.6 9.2E-05   20.9  14.9   89   13-111     1-93  (375)
108 KOG2302 consensus               82.1       4  0.0001   20.7   8.8   55   27-87   1360-1419(1956)
109 pfam02699 YajC Preprotein tran  81.7     2.4 6.2E-05   22.0   4.1   20   22-41      3-22  (83)
110 pfam01972 SDH_sah Serine dehyd  80.1     4.7 0.00012   20.3   6.1   48   14-68      2-50  (286)
111 TIGR00496 frr ribosome recycli  80.0     1.4 3.5E-05   23.6   2.4   83   41-126    91-173 (177)
112 COG1317 FliH Flagellar biosynt  78.5     5.3 0.00013   19.9  17.8   64  112-176    93-156 (234)
113 PRK05183 hscA chaperone protei  78.2     5.4 0.00014   19.9   9.9   69   55-128   511-579 (621)
114 pfam10961 DUF2763 Protein of u  77.5     2.3 5.9E-05   22.2   2.9   23   16-39     16-38  (91)
115 MTH00158 ATP8 ATP synthase F0   77.5     3.6 9.2E-05   20.9   3.9   33   13-46      1-33  (52)
116 pfam12128 DUF3584 Protein of u  77.3     5.7 0.00015   19.7  15.4   47   47-93    599-645 (1192)
117 COG1766 fliF Flagellar basal b  76.7     5.4 0.00014   19.9   4.6   49    5-55    425-473 (545)
118 PRK00247 putative inner membra  76.3     6.1 0.00015   19.6   8.8   43   84-131   323-365 (422)
119 COG3190 FliO Flagellar biogene  75.6     4.4 0.00011   20.4   3.9   40    7-47     14-53  (137)
120 COG3462 Predicted membrane pro  74.5     5.5 0.00014   19.8   4.2   18   16-33     46-63  (117)
121 TIGR01069 mutS2 MutS2 family p  73.2     7.3 0.00019   19.1  12.6  136   15-151   501-644 (834)
122 PRK11267 biopolymer transport   72.2     3.5   9E-05   21.0   2.7   35    1-35      3-37  (141)
123 PRK13953 mscL large-conductanc  71.7     6.5 0.00017   19.4   4.0   32   23-55     67-98  (127)
124 PRK08024 consensus              70.8     8.2 0.00021   18.7   6.7   68   11-78      2-81  (306)
125 pfam05680 ATP-synt_E ATP synth  70.3     8.5 0.00022   18.7   8.3   30   13-42      1-30  (81)
126 PRK01433 hscA chaperone protei  69.9     8.6 0.00022   18.6  12.1   71   55-130   484-554 (595)
127 pfam04612 GspM General secreti  69.2     8.9 0.00023   18.5   8.7   52   24-75     16-67  (159)
128 TIGR02002 PTS-II-BC-glcB PTS s  68.6       4  0.0001   20.6   2.4   20   34-53    191-210 (518)
129 PRK13952 mscL large-conductanc  68.3       9 0.00023   18.5   4.1   35   11-50     77-111 (143)
130 PRK09702 arbutin specific enzy  67.2     9.5 0.00024   18.4   4.0   28   18-45      6-37  (161)
131 KOG4759 consensus               66.9      10 0.00025   18.2   8.9   57   72-131   197-253 (263)
132 MTH00186 ATP8 ATP synthase F0   66.8       6 0.00015   19.6   3.0   10   13-22      1-10  (51)
133 COG4741 Predicted secreted end  66.6      10 0.00026   18.2  13.5   22   44-65     24-45  (175)
134 pfam12072 DUF3552 Domain of un  66.3      10 0.00026   18.2  23.7   37   25-61      7-43  (201)
135 COG3524 KpsE Capsule polysacch  65.9     5.5 0.00014   19.8   2.6   19   22-40     19-37  (372)
136 PRK11466 hybrid sensory histid  64.2      11 0.00029   17.9  14.8   33   28-60    337-369 (912)
137 PRK00290 dnaK molecular chaper  63.6      12 0.00029   17.8  12.5   94   55-153   504-601 (631)
138 PRK04778 septation ring format  62.9      12  0.0003   17.8  17.7   32   36-68     20-56  (569)
139 COG4736 CcoQ Cbb3-type cytochr  62.8       8  0.0002   18.8   3.0   24   26-49     12-35  (60)
140 PRK00567 mscL large-conductanc  62.6      11 0.00028   18.0   3.7   31   15-50     70-100 (134)
141 COG4023 SBH1 Preprotein transl  62.6     9.4 0.00024   18.4   3.3   34    8-46     24-57  (57)
142 PRK06531 yajC preprotein trans  62.1      12 0.00031   17.7   4.1   17   41-57     17-33  (120)
143 PRK10361 DNA recombination pro  61.9      12 0.00031   17.7  21.4   12   17-28      2-13  (475)
144 PRK00888 ftsB cell division pr  61.6      13 0.00032   17.6   8.7   19   27-45      3-22  (105)
145 pfam06635 NolV Nodulation prot  61.4      13 0.00032   17.6  15.1   85   84-172    37-126 (207)
146 KOG1962 consensus               60.7      13 0.00033   17.5  13.2   27   30-56    103-129 (216)
147 pfam09851 DUF2078 Predicted me  59.8      13 0.00034   17.4   5.4   23   20-42      9-31  (73)
148 KOG2629 consensus               58.9      14 0.00036   17.3  15.0   71    9-82     64-144 (300)
149 cd00922 Cyt_c_Oxidase_IV Cytoc  58.7     3.6 9.3E-05   20.9   0.7   49    5-53     59-109 (136)
150 MTH00147 ATP8 ATP synthase F0   56.9      10 0.00026   18.1   2.7   10   13-22      1-10  (51)
151 PRK11677 cytochrome d ubiquino  56.4      15 0.00039   17.1  11.4   75   20-107     2-76  (134)
152 KOG0206 consensus               55.9      16  0.0004   17.0   3.7   33   20-52   1046-1078(1151)
153 PRK13954 mscL large-conductanc  54.9      14 0.00036   17.3   3.2   28   23-51     64-91  (120)
154 KOG2927 consensus               54.7       7 0.00018   19.2   1.6   31   18-48    229-263 (372)
155 COG2825 HlpA Outer membrane pr  53.4      17 0.00044   16.8  14.9   36  116-151   102-137 (170)
156 pfam11044 TMEMspv1-c74-12 Plec  53.3      17 0.00044   16.8   4.1   34   20-54      3-36  (49)
157 COG4768 Uncharacterized protei  52.9      17 0.00044   16.7  18.3   98   27-127    10-107 (139)
158 PRK11091 aerobic respiration c  52.8      18 0.00045   16.7  16.7   81   43-129    72-152 (779)
159 TIGR01652 ATPase-Plipid phosph  52.6      18 0.00045   16.7   4.5   42   12-53   1200-1241(1249)
160 pfam05545 FixQ Cbb3-type cytoc  50.8      19 0.00048   16.5   3.8   27   23-49     10-36  (49)
161 pfam06160 EzrA Septation ring   50.6      19 0.00048   16.5  16.9   31   27-59      8-38  (559)
162 PRK05886 yajC preprotein trans  49.9      20  0.0005   16.4   4.8   14   28-41     10-23  (108)
163 COG4046 Uncharacterized protei  49.7      20  0.0005   16.4   6.1   27   57-83     44-70  (368)
164 COG3224 Uncharacterized protei  49.6      19 0.00049   16.5   3.1   30   23-52    149-178 (195)
165 KOG4403 consensus               49.5      20  0.0005   16.4  13.5   71   12-89    204-274 (575)
166 TIGR01932 hflC HflC protein; I  49.4      20 0.00051   16.4   7.4   62   80-141   237-298 (345)
167 TIGR00659 TIGR00659 conserved   49.4      12 0.00031   17.7   2.1   43    3-57    133-175 (227)
168 PRK12704 phosphodiesterase; Pr  49.3      20 0.00051   16.4  16.0   19   86-104    64-82  (455)
169 PRK09731 putative general secr  48.5      21 0.00052   16.3   7.8   58   18-76     21-89  (178)
170 KOG4503 consensus               48.0      21 0.00053   16.2   7.5   47   18-65     82-131 (230)
171 COG5085 Predicted membrane pro  48.0      21 0.00053   16.2   7.5   47   18-65     82-131 (230)
172 CHL00094 dnaK heat shock prote  47.7      21 0.00054   16.2  12.1   93   55-152   504-600 (622)
173 pfam01442 Apolipoprotein Apoli  47.3      21 0.00055   16.2  19.7   82   45-126    30-112 (191)
174 COG0772 FtsW Bacterial cell di  46.3      22 0.00056   16.1   4.3   28   17-44     46-73  (381)
175 pfam07431 DUF1512 Protein of u  45.9      22 0.00057   16.0   8.1   50   25-82      7-56  (356)
176 pfam03245 Phage_lysis Bacterio  45.0      23 0.00059   16.0  11.7   22   74-95     61-82  (151)
177 pfam02472 ExbD Biopolymer tran  44.5      20 0.00052   16.3   2.6   26   10-35      2-27  (128)
178 PRK10633 hypothetical protein;  44.4      24  0.0006   15.9   4.1   38    8-47     34-72  (80)
179 pfam07798 DUF1640 Protein of u  44.1      24 0.00061   15.9  16.0   60   80-139    64-123 (177)
180 KOG3970 consensus               43.8      24 0.00062   15.8   3.3   29    9-42    241-269 (299)
181 pfam02936 COX4 Cytochrome c ox  43.6      18 0.00047   16.6   2.3   30   24-53     80-109 (143)
182 pfam03938 OmpH Outer membrane   43.5      25 0.00063   15.8  15.5   45  108-152    83-127 (157)
183 COG3924 Predicted membrane pro  43.4      25 0.00063   15.8   4.6   43    4-47     30-72  (80)
184 COG4942 Membrane-bound metallo  43.4      25 0.00063   15.8  15.5   58   44-101    29-86  (420)
185 pfam11027 DUF2615 Protein of u  43.1      25 0.00063   15.8   3.2   16   19-34     54-69  (103)
186 PRK13955 mscL large-conductanc  42.9      25 0.00064   15.8   4.6   32   22-54     66-97  (130)
187 COG3031 PulC Type II secretory  42.5      25 0.00065   15.7   4.1   19   13-31      1-19  (275)
188 TIGR00782 ccoP cytochrome c ox  42.1      26 0.00066   15.7   4.7   60   18-78     27-91  (303)
189 TIGR02390 RNA_pol_rpoA1 DNA-di  41.9      26 0.00066   15.7   6.4   50   99-148   683-745 (901)
190 pfam05137 PilN Fimbrial assemb  41.0      27 0.00068   15.6  10.4   12   32-43     28-39  (162)
191 cd03404 Band_7_HflK Band_7_Hfl  40.5      27 0.00069   15.5  10.1   29   99-127   197-225 (266)
192 pfam05992 SbmA_BacA SbmA/BacA-  40.4      27  0.0007   15.5   5.8   52   10-63    148-201 (315)
193 TIGR02210 rodA_shape rod shape  40.3      27  0.0007   15.5   3.5   22   18-39     32-53  (416)
194 TIGR00867 deg-1 degenerin; Int  40.3      27  0.0007   15.5   3.5   42   11-53      9-51  (757)
195 PRK13411 molecular chaperone D  39.4      28 0.00072   15.4  13.2   93   55-152   504-602 (655)
196 TIGR02978 phageshock_pspC phag  39.2      29 0.00073   15.4   3.7   33   55-87     78-111 (128)
197 pfam01741 MscL Large-conductan  39.0      29 0.00073   15.4   4.2   27   23-50     71-97  (127)
198 pfam04387 PTPLA Protein tyrosi  38.5      29 0.00075   15.3   4.4   45    9-59    113-158 (161)
199 pfam06459 RR_TM4-6 Ryanodine R  38.1      30 0.00076   15.3   2.7   17   22-38    130-146 (217)
200 TIGR02207 lipid_A_htrB lipid A  38.1      30 0.00076   15.3   5.6   60   16-78      8-79  (308)
201 COG1459 PulF Type II secretory  37.7      30 0.00077   15.2   5.2   30   17-46    208-237 (397)
202 pfam03967 PRCH Photosynthetic   37.6      30 0.00077   15.2   3.3   25   15-41      8-32  (135)
203 KOG2180 consensus               37.4      31 0.00078   15.2  10.7   89   14-112    17-109 (793)
204 PRK06602 NADH dehydrogenase su  37.0      31 0.00079   15.2   2.6   31    5-35     41-73  (121)
205 PRK10774 cell division protein  36.9      31 0.00079   15.2   2.8   25   15-39     66-91  (405)
206 TIGR01400 fliR flagellar biosy  35.9      32 0.00082   15.1   5.3   29   13-42    201-229 (248)
207 pfam07850 Renin_r Renin recept  35.8      32 0.00082   15.1   3.5   30   16-45     49-78  (98)
208 pfam03606 DcuC C4-dicarboxylat  35.6      33 0.00083   15.0   5.0   45    8-58    182-226 (456)
209 TIGR02208 lipid_A_msbB lipid A  35.4      16  0.0004   17.0   0.9   35   16-53     10-44  (307)
210 PRK06771 hypothetical protein;  35.2      33 0.00084   15.0   4.3   12   26-37      3-14  (93)
211 PRK10930 FtsH protease regulat  35.2      33 0.00084   15.0  12.2   43   65-107   247-289 (419)
212 PRK06397 V-type ATP synthase s  35.2      33 0.00084   15.0  14.6   42   74-115    28-69  (111)
213 TIGR02108 PQQ_syn_pqqB coenzym  35.0      17 0.00043   16.8   1.0   23    6-28      6-28  (314)
214 KOG4812 consensus               34.7      34 0.00086   15.0   3.8   25   25-49    225-249 (262)
215 TIGR01401 fliR_like_III type I  34.6      34 0.00086   14.9   4.7   32   14-46    215-246 (262)
216 pfam06196 DUF997 Protein of un  34.4      34 0.00087   14.9   3.9   32   15-47     36-67  (75)
217 pfam08269 Cache_2 Cache domain  33.9      35 0.00088   14.9   4.9   23   49-71      3-25  (95)
218 PRK06860 lipid A biosynthesis   33.7      35 0.00089   14.9   6.8   67   12-78      5-83  (309)
219 COG3058 FdhE Uncharacterized p  33.6      35 0.00089   14.8   4.1   18   12-29     87-104 (308)
220 COG3599 DivIVA Cell division i  33.0      36 0.00091   14.8  19.0   93   48-140    46-160 (212)
221 TIGR02121 Na_Pro_sym sodium/pr  32.8      35 0.00088   14.9   2.3   51    5-58     49-105 (517)
222 pfam07464 ApoLp-III Apolipopho  32.4      37 0.00094   14.7  16.5   10  163-172   142-151 (166)
223 pfam02108 FliH Flagellar assem  31.7      38 0.00096   14.7   9.6   60  114-174     5-64  (128)
224 pfam06898 YqfD Putative stage   31.0      32 0.00081   15.1   1.9   37    9-45     73-110 (383)
225 pfam05814 DUF843 Baculovirus p  30.8      39   0.001   14.6   3.2   26   22-47     24-49  (83)
226 pfam06295 DUF1043 Protein of u  30.4      40   0.001   14.5  11.8   71   25-108     3-73  (128)
227 KOG3054 consensus               29.8      41   0.001   14.5   3.3   22   24-45      3-24  (299)
228 TIGR00785 dass transporter, di  29.4      41  0.0011   14.4   2.6   38   29-66    222-259 (473)
229 TIGR02832 spo_yunB sporulation  29.3      41  0.0011   14.4   6.1   37   22-58      8-44  (220)
230 PRK10588 hypothetical protein;  29.1      42  0.0011   14.4   3.7   31   12-43     65-96  (97)
231 COG2364 Predicted membrane pro  29.0      41   0.001   14.4   2.1   29   17-45     99-127 (210)
232 PRK10132 hypothetical protein;  28.4      43  0.0011   14.3   8.0   50   64-113    13-62  (108)
233 pfam07406 NICE-3 NICE-3 protei  28.1      15 0.00039   17.1  -0.2   32   10-41      2-33  (186)
234 COG4477 EzrA Negative regulato  28.0      44  0.0011   14.3  15.8   99   29-128    12-132 (570)
235 TIGR00779 cad cadmium resistan  28.0      44  0.0011   14.3   4.5   43    3-45    109-151 (196)
236 COG4239 ABC-type uncharacteriz  27.5      34 0.00086   15.0   1.5   32    6-37    179-215 (341)
237 PRK11029 FtsH protease regulat  27.5      45  0.0011   14.2  10.5   52   84-135   225-276 (334)
238 pfam05568 ASFV_J13L African sw  27.4      45  0.0011   14.2   5.1   43   16-63     22-64  (189)
239 PRK10573 type IV pilin biogene  27.2      45  0.0011   14.2   3.6   28   17-44    208-235 (397)
240 KOG4610 consensus               26.9      46  0.0012   14.1   3.5   34    9-46    137-183 (328)
241 MTH00170 ATP8 ATP synthase F0   26.9      46  0.0012   14.1   3.1   16   13-28      1-18  (53)
242 COG3541 Predicted nucleotidylt  26.8      34 0.00087   14.9   1.4   16    9-24    156-171 (248)
243 MTH00012 ND3 NADH dehydrogenas  26.7      46  0.0012   14.1   2.1   31    5-35     35-67  (117)
244 pfam10523 BEN BEN domain. The   26.6      46  0.0012   14.1   3.7   40    8-52     29-68  (78)
245 pfam06305 DUF1049 Protein of u  26.4      47  0.0012   14.1   5.9   28   20-47     28-55  (80)
246 TIGR00819 ydaH AbgT transporte  26.4      47  0.0012   14.1   4.2   53   15-67    305-357 (527)
247 smart00030 CLb CLUSTERIN Beta   26.3      47  0.0012   14.1   7.9   54   44-97     31-87  (206)
248 PRK11560 phosphoethanolamine t  26.0      47  0.0012   14.0   4.2   14   38-51     68-81  (556)
249 MTH00161 ND3 NADH dehydrogenas  25.9      48  0.0012   14.0   2.3   31    5-35     33-65  (113)
250 TIGR01497 kdpB K+-transporting  25.6      48  0.0012   14.0   3.3   25    7-36     51-75  (675)
251 pfam05337 CSF-1 Macrophage col  25.3      49  0.0012   14.0   2.0   30    3-38    211-240 (285)
252 pfam03279 Lip_A_acyltrans Bact  25.2      49  0.0012   14.0   6.6   66   13-78      1-78  (295)
253 COG3952 Predicted membrane pro  25.1      49  0.0013   13.9   3.2   32   16-47     15-46  (113)
254 PTZ00234 variable surface prot  24.8      34 0.00087   14.9   1.1   41   15-56    358-398 (433)
255 pfam06212 GRIM-19 GRIM-19 prot  24.7      50  0.0013   13.9   6.6   34    8-41     10-48  (130)
256 COG3167 PilO Tfp pilus assembl  24.7      50  0.0013   13.9  10.5   56   16-85     14-71  (211)
257 TIGR02350 prok_dnaK chaperone   24.7      50  0.0013   13.9  12.1   70   55-129   502-571 (598)
258 MTH00106 ND3 NADH dehydrogenas  24.6      49  0.0013   13.9   1.9   32    4-35     32-65  (115)
259 PTZ00186 heat shock 70 kDa pre  24.6      50  0.0013   13.9  12.7   93   55-153   529-627 (657)
260 pfam11696 DUF3292 Protein of u  24.1      51  0.0013   13.8   2.8   34   16-50    129-162 (641)
261 TIGR02759 TraD_Ftype type IV c  24.1      51  0.0013   13.8   3.0   21   26-46     24-44  (613)
262 TIGR02282 MltB lytic murein tr  24.0      31  0.0008   15.1   0.8   10   12-21    176-185 (323)
263 pfam01098 FTSW_RODA_SPOVE Cell  24.0      52  0.0013   13.8   2.8   21   19-39     36-56  (356)
264 cd03514 CrtR_beta-carotene-hyd  23.8      52  0.0013   13.8   4.5   30   11-40     86-115 (207)
265 KOG3807 consensus               23.8      52  0.0013   13.8   3.8   11    9-19      5-15  (556)
266 COG1970 MscL Large-conductance  23.8      52  0.0013   13.8   4.5   28   25-53     73-100 (130)
267 PRK10697 DNA-binding transcrip  23.6      53  0.0013   13.8   5.0   13   17-29     31-43  (119)
268 cd00226 PRCH Photosynthetic re  23.3      53  0.0014   13.7   3.0   25   15-41      9-33  (246)
269 PRK11465 hypothetical protein;  23.2      54  0.0014   13.7   5.3   37    9-45    122-161 (741)
270 PRK10144 formate-dependent nit  23.2      54  0.0014   13.7   3.5   10   13-22     94-103 (126)
271 COG1684 FliR Flagellar biosynt  23.1      54  0.0014   13.7   6.6   29   12-41    206-234 (258)
272 TIGR02214 spoVD_pbp stage V sp  23.1      44  0.0011   14.2   1.4   30   26-55      3-35  (660)
273 MTH00101 ATP6 ATP synthase F0   23.1      54  0.0014   13.7   5.3   50   14-63      7-58  (226)
274 COG3088 CcmH Uncharacterized p  23.1      54  0.0014   13.7   3.5   19   14-35     99-117 (153)
275 pfam11119 DUF2633 Protein of u  23.0      54  0.0014   13.7   4.0   19   27-45     13-31  (59)
276 PRK11089 glucose-specific PTS   22.9      44  0.0011   14.2   1.4   18   27-44    355-372 (477)
277 COG4327 Predicted membrane pro  22.9      54  0.0014   13.7   2.5   14   24-37     25-38  (101)
278 MTH00202 ND3 NADH dehydrogenas  22.9      54  0.0014   13.7   2.2   32    4-35     32-65  (114)
279 KOG2264 consensus               22.5      55  0.0014   13.6  13.6   27   10-37     15-42  (907)
280 pfam00507 Oxidored_q4 NADH-ubi  22.3      56  0.0014   13.6   2.6   32    4-35     22-55  (102)
281 pfam05957 DUF883 Bacterial pro  22.3      56  0.0014   13.6  10.1   46   69-114     4-49  (94)
282 TIGR01933 hflK HflK protein; I  22.3      56  0.0014   13.6   5.3   43   65-107   174-216 (285)
283 pfam10112 Halogen_Hydrol 5-bro  22.1      56  0.0014   13.6  17.0   23   55-77     70-92  (199)
284 PRK13895 conjugal transfer pro  21.7      57  0.0015   13.5  12.0   27   93-119    47-73  (144)
285 MTH00113 ND3 NADH dehydrogenas  21.6      58  0.0015   13.5   2.4   32    4-35     32-65  (115)
286 PRK10654 dcuC C4-dicarboxylate  21.5      48  0.0012   14.0   1.3   45    6-56    180-224 (452)
287 PRK05305 phosphatidylserine de  21.3      59  0.0015   13.5   3.0   20   28-47     33-52  (214)
288 pfam11755 DUF3311 Protein of u  21.2      59  0.0015   13.5   3.0   31    6-40     21-51  (64)
289 pfam10104 Brr6_like_C_C Di-sul  21.2      59  0.0015   13.5   7.3   25   19-44      2-26  (135)
290 TIGR01495 ETRAMP early transcr  21.1      59  0.0015   13.5   1.8   40   30-69      6-57  (99)
291 PRK07928 NADH dehydrogenase su  20.9      46  0.0012   14.1   1.1   31    5-35     37-71  (119)
292 TIGR02070 mono_pep_trsgly mono  20.8      60  0.0015   13.4   2.7   28   28-55     12-40  (228)
293 PRK03564 formate dehydrogenase  20.7      60  0.0015   13.4   3.9   17   12-28     88-104 (307)
294 PRK13386 fliH flagellar assemb  20.5      61  0.0016   13.4  12.8   44  132-175   114-160 (236)
295 COG2274 SunT ABC-type bacterio  20.4      61  0.0016   13.4  11.8   35   20-54    290-324 (709)
296 PRK12488 acetate permease; Pro  20.2      62  0.0016   13.3   2.5   11  142-152   379-389 (549)

No 1  
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=100.00  E-value=2.1e-42  Score=281.79  Aligned_cols=170  Identities=23%  Similarity=0.416  Sum_probs=165.5

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56453346899885988768899999999999999999995540899999999999999999999999999999999999
Q gi|254781086|r    3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEES   82 (176)
Q Consensus         3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~   82 (176)
                      ++.+++++||||||||+||+||+||++|+|++||++++||+||||.++|++|++.|.++|+.|++++.+++.+.++|+..
T Consensus        12 ~~~~~~~~~GmPQld~~~f~sQiFWl~i~F~ily~vl~k~~lPrI~~vLe~R~~~I~~dL~~Ae~~k~eAe~~~~~ye~~   91 (181)
T PRK13454         12 AADAAASAPGMPQLDFDTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKA   91 (181)
T ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             76503457999999902407899999999999999999999988898999999999988999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999841599999
Q gi|254781086|r   83 LAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADV  162 (176)
Q Consensus        83 l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~  162 (176)
                      |.+||.++..++.+++.+++...+..+.+++.+++.++.+++.+|+..|..++.+|++++.+++..++++|+++++++.+
T Consensus        92 L~~Ar~eA~~ii~eAr~~a~~~~~~~~~~a~~el~~~i~~AE~~I~~~K~~Am~~i~~iA~d~a~~Iv~kL~gk~~~~~v  171 (181)
T PRK13454         92 LADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAALGGKADAAAV  171 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999999999999999999999999999999999999999999999889999999999999999998575877889


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999942
Q gi|254781086|r  163 QKILDRKRDG  172 (176)
Q Consensus       163 ~~~i~~~~~~  172 (176)
                      .+.|++.++|
T Consensus       172 ~aaV~~~~k~  181 (181)
T PRK13454        172 DAAVAQRMKG  181 (181)
T ss_pred             HHHHHHHHCC
T ss_conf             9999987477


No 2  
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=100.00  E-value=4.8e-39  Score=261.08  Aligned_cols=161  Identities=37%  Similarity=0.600  Sum_probs=156.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68998859887688999999999999999999955408999999999999999999999999999999999999999999
Q gi|254781086|r   10 SSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAH   89 (176)
Q Consensus        10 ~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~e   89 (176)
                      +||||||||+||+||+||++|+|++|||+++||++|+|.++|++|++.|.++|+.|++++.+++..+++|+..|.+||.+
T Consensus        41 ~gg~Pqld~~t~~sQifWL~I~F~~lY~~~sk~~lPrI~~vLe~R~~~I~~DLe~Ae~lk~EAe~~~a~Ye~~LaeAR~e  120 (204)
T PRK09174         41 SGVFPPFDSTHYASQLLWLAITFGLFYLFLSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARSK  120 (204)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999998345089999999999999999999976037779999999998799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999-841599999999999
Q gi|254781086|r   90 AKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDR  168 (176)
Q Consensus        90 a~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~  168 (176)
                      +..|+.+++.++....+..+.+++.++++++.+++++|...|.+++.+|+.++.+++..++++| +.+++++.+.+.|+.
T Consensus       121 A~~Ii~~Ar~~a~~~~e~~~a~~ea~L~~kia~AE~~I~~~r~~Al~~V~~IA~d~A~~iV~~L~G~~v~~~~v~~aV~a  200 (204)
T PRK09174        121 AASIAQAAREAAKAKAEAERAEIEASLEKKLKEAEERIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKASVSAAVKA  200 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999998799999999999999999986899999999999987


Q ss_pred             HH
Q ss_conf             99
Q gi|254781086|r  169 KR  170 (176)
Q Consensus       169 ~~  170 (176)
                      ..
T Consensus       201 a~  202 (204)
T PRK09174        201 AR  202 (204)
T ss_pred             HC
T ss_conf             50


No 3  
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=100.00  E-value=1e-33  Score=228.20  Aligned_cols=153  Identities=22%  Similarity=0.438  Sum_probs=148.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98859887688999999999999999999955408999999999999999999999999999999999999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE   92 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~   92 (176)
                      ||||||+||+||+|||+|+|++||++++||++|+|.++|+.|++.|.++|+.|++.+.+++....+|+..|.+||.++..
T Consensus         1 MPQld~~~~~sQifWL~itF~~ly~~~sk~~lPri~~~le~R~~~I~~dl~~A~~~k~eae~~~~~ye~~l~~Ak~eA~~   80 (157)
T PRK06569          1 MPQFDIATYYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTLEVEKLNKYYNEEIDKTNTEIDR   80 (157)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998224089999999999999999999986048779998999999889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999-841599999999
Q gi|254781086|r   93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKI  165 (176)
Q Consensus        93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~  165 (176)
                      ++.+++..+....+..+.+++++++..+.+++++|...+.+++.++.+++.+++..++++| |.++|.+.++.+
T Consensus        81 i~~ea~~~l~~e~~~k~~~le~~l~~~i~~aekeI~~~k~~a~~~i~~ia~eia~~iI~kl~G~k~n~s~l~~i  154 (157)
T PRK06569         81 LKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKITGTKADMNLLQNI  154 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             99999999999999999999999999999999999999998787699999999999999986888778876432


No 4  
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=100.00  E-value=2.6e-31  Score=213.30  Aligned_cols=169  Identities=18%  Similarity=0.304  Sum_probs=160.2

Q ss_pred             CCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9756453346899885-98876889999999999999999999554-089999999999999999999999999999999
Q gi|254781086|r    1 MASSSSSDFSSRFPPF-DTSTFLSQFFWLAIIFGIFYWVTHRFILP-RLSSIMEVRRNLISSDQEKMDSAKREVESMISS   78 (176)
Q Consensus         1 ~~~~~~~~~~~gmpql-d~~~f~~q~fw~~I~F~il~~il~~~~~~-pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~   78 (176)
                      ++++++.+++||||+| ||+      ||++|+|++|++++.||.+| ||.++||+|.+.|.++|++|++++++|++++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~d~~------FWv~IsFvif~~iL~~~~vp~~I~~~LD~R~~~I~~dLdeAe~lreEAe~lLae   83 (184)
T PRK13455         10 LVASPALAAGGPFFSLSNTD------FIVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLAS   83 (184)
T ss_pred             HHCCHHHHCCCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96286876479988888954------999999999999999995589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999999999999-8415
Q gi|254781086|r   79 YEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSV  157 (176)
Q Consensus        79 ~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~  157 (176)
                      |++++.+++.++.+|+++|+.+++...++.+.+++.+++++...++.+|+.++.++..+|++.+.+++..+++++ +.++
T Consensus        84 ye~~l~~A~~EA~~Ii~~Ak~~A~~~~~~~~~~a~~~i~r~~~~Ae~~I~~~k~~A~~eir~~a~~lAi~aA~kii~~~l  163 (184)
T PRK13455         84 YERKQREVQEQADRIVANARDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVRAVRDRAISVAVAAAADVIAKQM  163 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999999999999999999999999999999999999988889999999999999998657


Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999942106
Q gi|254781086|r  158 SDADVQKILDRKRDGIDA  175 (176)
Q Consensus       158 ~~~~~~~~i~~~~~~i~~  175 (176)
                      +++..+++||++++++++
T Consensus       164 ~~~~~~~LId~~I~el~~  181 (184)
T PRK13455        164 TAAEANALIDEAIKEVEA  181 (184)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             999899999999999976


No 5  
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=100.00  E-value=1e-30  Score=209.67  Aligned_cols=165  Identities=16%  Similarity=0.236  Sum_probs=156.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68998859887688999999999999999999955408999999999999999999999999999999999999999999
Q gi|254781086|r   10 SSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAH   89 (176)
Q Consensus        10 ~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~e   89 (176)
                      .+||--|+|+.+  .+||.+|+|++|||+++||+||||.++|++|++.|.+++++|++.+.+++..+.+|+..|.+|+.+
T Consensus         6 ~~~~~~l~~n~~--~~iw~~i~F~il~~il~kf~~~pi~~~Ld~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~A~~e   83 (173)
T PRK13460          6 AKGLSLLDVNPG--LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDE   83 (173)
T ss_pred             HCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             056775889877--999999999999999999968889999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999-841599999999999
Q gi|254781086|r   90 AKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDR  168 (176)
Q Consensus        90 a~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~  168 (176)
                      +.+|+++|+.+++...++.+.+++.++++++.+++.+|+.++.++..++++.+++++..+++|+ +.+++.++++++|++
T Consensus        84 a~~Ii~~A~~~Ae~~~~~~~~~A~~ea~~i~~~A~~~Ie~ek~~A~~~lr~ei~~lav~~A~kii~~~ld~~~~~~lid~  163 (173)
T PRK13460         84 ANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIET  163 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999999999877599989999999


Q ss_pred             HHHHHHCC
Q ss_conf             99421069
Q gi|254781086|r  169 KRDGIDAF  176 (176)
Q Consensus       169 ~~~~i~~~  176 (176)
                      +++++++.
T Consensus       164 ~i~elgk~  171 (173)
T PRK13460        164 ELAKLGKL  171 (173)
T ss_pred             HHHHHHCC
T ss_conf             99873004


No 6  
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=100.00  E-value=3.8e-30  Score=206.08  Aligned_cols=165  Identities=16%  Similarity=0.194  Sum_probs=156.6

Q ss_pred             CCCCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6899885988768-------899999999999999999995540899999999999999999999999999999999999
Q gi|254781086|r   10 SSRFPPFDTSTFL-------SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEES   82 (176)
Q Consensus        10 ~~gmpqld~~~f~-------~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~   82 (176)
                      .+|.|.|+|++-+       ..+||.+|+|+||+|+|++|+||||.++|++|++.|++++++|++.++++++++++|+..
T Consensus        29 ~~~~~~~~~~~iin~lfPn~~~Fia~lIaF~ILl~lL~k~awKPI~k~Ld~R~~kI~~~L~~Aekar~EAe~ll~e~e~~  108 (201)
T PRK06231         29 TENVEELKSKSIINELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQR  108 (201)
T ss_pred             CCCCHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             69802106898999977886999999999999999999997878999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999-84159999
Q gi|254781086|r   83 LAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDAD  161 (176)
Q Consensus        83 l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~  161 (176)
                      +.+|+.++++|+++|+.++++..++.+.+++.++++++.+|+.+|+.+|.++..++++.+++++..+++|+ +.++++++
T Consensus       109 L~eAr~EA~eII~~Ak~~Ae~~~~ei~~~A~~eA~~i~e~A~~eIe~Ek~~A~~elr~eva~LAv~aAeKiI~k~Ld~~~  188 (201)
T PRK06231        109 HENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDRED  188 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999986679998


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999994210
Q gi|254781086|r  162 VQKILDRKRDGID  174 (176)
Q Consensus       162 ~~~~i~~~~~~i~  174 (176)
                      ++++||++++++|
T Consensus       189 ~~~LIde~IkeLe  201 (201)
T PRK06231        189 DDKLVDEFIRELE  201 (201)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999986548


No 7  
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=99.98  E-value=1.7e-29  Score=202.06  Aligned_cols=165  Identities=16%  Similarity=0.187  Sum_probs=158.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53346899885988768899999999999999999995540899999999999999999999999999999999999999
Q gi|254781086|r    6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAI   85 (176)
Q Consensus         6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~e   85 (176)
                      +||++||+ ++|+.+|.+|+    |+|+||+++|+||+||||.++|++|++.|.+++++|++.+.+|+..+.+|++++.+
T Consensus         8 a~e~~~~f-g~n~~~l~~~i----Inf~Il~~iL~~f~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~l~e~e~~l~~   82 (174)
T PRK07352          8 ATEASGGF-GLNLNLLETNL----INLAIVIGLLYYFLRGFLGKILERRREAILQALKEAEERLRKAAQALAEAQQKLAQ   82 (174)
T ss_pred             HHHHCCCC-CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99763788-98912899999----99999999999995989999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999-84159999999
Q gi|254781086|r   86 ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQK  164 (176)
Q Consensus        86 ak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~  164 (176)
                      ++.++.+|+++++.+++...++...+++.++++++.+++.+|+.++.++..++++.+.+++..+++++ ...+++..+++
T Consensus        83 a~~ea~~Ii~~A~~~a~~~~~~~~~~A~~e~e~i~~~A~~~Ie~e~~~a~~elr~ei~~lAi~~A~kil~~~ld~~~~~~  162 (174)
T PRK07352         83 AQQEAERIRADAKARAEAIRQEIEKQAIEDMARLKQTAAADLSAEAERVIAQLRREAAELAIAKAESQLPGRLDEAAQQR  162 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             79999999999999999999999999999999999999999999999999999999999999999999987749999999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999942106
Q gi|254781086|r  165 ILDRKRDGIDA  175 (176)
Q Consensus       165 ~i~~~~~~i~~  175 (176)
                      +||++++++.+
T Consensus       163 lId~~I~~lGg  173 (174)
T PRK07352        163 LIDRSIANLGG  173 (174)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999997479


No 8  
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=99.97  E-value=1.5e-28  Score=196.17  Aligned_cols=156  Identities=16%  Similarity=0.222  Sum_probs=149.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85988768899999999999999999995540899999999999999999999999999999999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII   94 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii   94 (176)
                      ++|+.    .+||.+|+|+||+++|++|+||||.++|++|++.|.+++++|++.+.+++..+++|+..|.+++.++.+|+
T Consensus        15 gidw~----t~~~q~I~F~il~~ll~kf~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~a~~ea~~Ii   90 (173)
T PRK13453         15 GVEWG----TVIVQVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKIL   90 (173)
T ss_pred             CCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99789----99999999999999999998989999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999-84159999999999999421
Q gi|254781086|r   95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI  173 (176)
Q Consensus        95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i  173 (176)
                      ++++.+++...++...+++.++++++.+++.+|+.++..+..+++..+.+++..+++|+ +.++++..++++|+++++.+
T Consensus        91 ~~A~~~Ae~~~~~~~~~A~~ea~~i~~~A~~~Ie~ek~~a~~elr~ei~~lav~~A~Kil~~~l~~~~~~~LId~~i~e~  170 (173)
T PRK13453         91 EDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKALVDKYLKEA  170 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999986769998999999999861


Q ss_pred             H
Q ss_conf             0
Q gi|254781086|r  174 D  174 (176)
Q Consensus       174 ~  174 (176)
                      +
T Consensus       171 G  171 (173)
T PRK13453        171 G  171 (173)
T ss_pred             C
T ss_conf             7


No 9  
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=99.97  E-value=3.9e-28  Score=193.71  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=149.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85988768899999999999999999995540899999999999999999999999999999999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII   94 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii   94 (176)
                      .+|+.|    +||.+|+|++|+|+|++|+||||.++|++|++.|.+++++|++.+.+++..+.+|+..|.+++.++.+|+
T Consensus         2 ~in~~t----~i~q~inF~il~~il~kf~~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~a~~ea~~Ii   77 (159)
T PRK13461          2 EINIPT----IIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDEKIEKADEDAEKARELKLKNERILKSAKEEGKKIV   77 (159)
T ss_pred             CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             785999----9999999999999999997888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999-84159999999999999421
Q gi|254781086|r   95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI  173 (176)
Q Consensus        95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i  173 (176)
                      ++++.+++...+....+++.++++++.+++.+|+.++.++..++++.+.+++..+++|+ +.++++++++++||++++.+
T Consensus        78 ~~A~~~A~~~~~~i~~~A~~ea~~i~~~A~~~Ie~e~~~a~~el~~ev~~la~~~A~kil~~~ld~~~~~~lid~~i~el  157 (159)
T PRK13461         78 EEYKSKAENVYEEIVKEAHEEAESIIERAKLEIQREKEKAEYEIKNQAVDLAVLLSSKALEESIDESEHRELIKDFISKV  157 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999999999999999999999999999999999999999987759998999999999785


Q ss_pred             H
Q ss_conf             0
Q gi|254781086|r  174 D  174 (176)
Q Consensus       174 ~  174 (176)
                      +
T Consensus       158 G  158 (159)
T PRK13461        158 G  158 (159)
T ss_pred             C
T ss_conf             8


No 10 
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=99.96  E-value=4.7e-27  Score=186.98  Aligned_cols=154  Identities=26%  Similarity=0.359  Sum_probs=147.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85988768899999999999999999995540899999999999999999999999999999999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII   94 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii   94 (176)
                      -||+     .+||.+|+|+|||++|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+++.++.+++
T Consensus         2 ~~n~-----T~~~~~I~F~il~~ll~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~~a~~~~~e~~~~l~~a~~ea~~ii   76 (156)
T PRK05759          2 NINA-----TLIGQLIAFLILVWFCMKFVWPPIMKALEERQKKIADGLAAAERAKKELEAAQAKAEEQLAEARAEAAEII   76 (156)
T ss_pred             CCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6619-----99999999999999999997878999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999-84159999999999999421
Q gi|254781086|r   95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI  173 (176)
Q Consensus        95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i  173 (176)
                      ++++.++....+..+.+++.++++++.+++.+|..++.++..+++..+.+++..+++|+ +..+++..++++||+++++|
T Consensus        77 ~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~I~~e~~~a~~~l~~~i~~la~~~a~kil~~~l~~~~~~~lid~~i~~l  156 (156)
T PRK05759         77 EQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAHSDLIDKLIAEL  156 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999999999999999999999999999999999999999886779998999999987439


No 11 
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=99.96  E-value=3.6e-27  Score=187.70  Aligned_cols=151  Identities=14%  Similarity=0.208  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999554-0899999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILP-RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ  103 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~-pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~  103 (176)
                      -||++|+|++||++++||+|| ||.++|++|.+.|.++|++|++.+++++.++++|+..+.+|+.++.+|+++|+.+++.
T Consensus         4 ~FW~~I~fvi~~~ll~~~~~p~~i~~~Ld~R~~~I~~~l~~Ae~~~~eAe~~~~e~e~~l~~A~~ea~~Ii~~A~~~a~~   83 (159)
T PRK09173          4 TFWAFVGLVLFLALVVYLKVPGMIGRSLDERADRIKNELDEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEA   83 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             29999999999999999977899999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999999999999999999999999-8415999999999999942106
Q gi|254781086|r  104 NLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGIDA  175 (176)
Q Consensus       104 ~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i~~  175 (176)
                      ..++...+++.++.++..+++.+|..++..+..+|++.+.+++..+++++ +.+++++.++++|+++++.|++
T Consensus        84 ~~~~~~~~a~~~~~~~~~~Ae~~I~~~~~~A~~elk~~~~~lai~~a~kii~~~ld~~~~~~Li~~~i~ev~~  156 (159)
T PRK09173         84 LTAEAKRKTEEYVARRNKLAEQKIAQAEADAINAVRASAVDLAVAAAGKLLAEKVDAKAAGELFKDALAQVKT  156 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999998999999999999999999999999999999998667999899999999999976


No 12 
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=99.96  E-value=1.6e-27  Score=189.92  Aligned_cols=147  Identities=17%  Similarity=0.228  Sum_probs=139.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64533468998859887688999999999999999999955408999999999999999999999999999999999999
Q gi|254781086|r    4 SSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESL   83 (176)
Q Consensus         4 ~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l   83 (176)
                      ..+.+++|||..||+++|     |.+|+|+||||+|++|+||||.++|++|++.|.+++++|+..+.+++.+.++|+..|
T Consensus         9 ~~a~~~~~~~~~~n~Tl~-----~q~i~FliL~~lL~kf~~~Pi~~~ld~R~~~I~~~l~~Ae~~~~ea~~~~~eye~~L   83 (156)
T CHL00118          9 IEAEEPEGGLFDFNATLP-----LMALQFLLLMVLLNAIFYKPIGKILDEREEYIRSNLAKASSKLAKANELTAQYEEQL   83 (156)
T ss_pred             HHHHCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             986444488708658999-----999999999999999989899999999999999889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999999984
Q gi|254781086|r   84 AIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF  155 (176)
Q Consensus        84 ~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~  155 (176)
                      .+|+.++..++++++.+++...++.+.+++.++++++.+++.+|+.++.++..++++.+.+++..+++|+.+
T Consensus        84 ~~Ar~Ea~~ii~~A~~~a~~~~~~i~~~A~~ea~~~i~~A~~eIe~ek~~a~~el~~ev~~la~~ia~Kil~  155 (156)
T CHL00118         84 SKARKEAQLLIAQSQKEAQEIVQEELKQAQKNAESLVEEATKQLEIQKEQALKSLESQVDTLSDQIKSKLLS  155 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999999999999999999999999999999999999999999999998758


No 13 
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=99.95  E-value=3.3e-25  Score=175.58  Aligned_cols=164  Identities=16%  Similarity=0.107  Sum_probs=154.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34689988598876889999999999999999999554089999999999999999999999999999999999999999
Q gi|254781086|r    8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIAR   87 (176)
Q Consensus         8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak   87 (176)
                      +..||+ +||+..|.+++    |||+|++++|+||+++|+.++|++|+..|..++++|++.+.+|++.+.+|+.+|..|+
T Consensus        15 ~~~~~f-g~N~niletnl----INl~Ivi~iL~~f~~~~L~~~L~~R~~~I~~~I~eAE~~~~eA~~~L~e~~~~L~~A~   89 (184)
T CHL00019         15 PSAGSF-GFNTDILETNL----INLSVVLGVLIYFGKGVLSDLLDNRKQRILNTIRNSEERREEAIEKLEKARARLRQAE   89 (184)
T ss_pred             CCCCCC-CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             556667-76740999999----9999999999999599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999-98415999999999
Q gi|254781086|r   88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKIL  166 (176)
Q Consensus        88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i  166 (176)
                      .++.+|+.+|+..++...++...+++.+++++...+...|..++.++..+++..+.+++...+.+ +...++++.+.++|
T Consensus        90 ~eA~~I~~~A~~~ae~~k~~i~~~a~~e~erl~~~A~~~I~~E~~kA~~elr~ev~~lAl~~a~k~L~~~Ld~~~q~~LI  169 (184)
T CHL00019         90 IEADEIRVNGYSEIEREKLNLINSTYEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTI  169 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999999999998664999999999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999421069
Q gi|254781086|r  167 DRKRDGIDAF  176 (176)
Q Consensus       167 ~~~~~~i~~~  176 (176)
                      |.++..+.++
T Consensus       170 d~~I~~LG~~  179 (184)
T CHL00019        170 DANIGLLGAM  179 (184)
T ss_pred             HHHHHHHHCC
T ss_conf             9999987162


No 14 
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=99.95  E-value=6.1e-25  Score=173.97  Aligned_cols=151  Identities=26%  Similarity=0.423  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999955408999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN  104 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~  104 (176)
                      +||.+|+|++|||++++|+||||.++|++|...|.+++++|++.+.++..+..+|+..+.+++.++..|++.|+.++...
T Consensus         9 ~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~   88 (161)
T COG0711           9 ILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQI   88 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999968679999999999999889999998999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999999999999999999999999-8415999999999999942106
Q gi|254781086|r  105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGIDA  175 (176)
Q Consensus       105 ~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i~~  175 (176)
                      .++.+.+++.++++++..++.+|..++..+..+++..+.+++..+++++ +..++......+++.++..++.
T Consensus        89 ~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aekll~~~~~~~~~~~lid~~~~~l~~  160 (161)
T COG0711          89 AEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGE  160 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999999999999999999999999999999999999989875789899999999986334


No 15 
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=99.94  E-value=1.5e-24  Score=171.59  Aligned_cols=151  Identities=17%  Similarity=0.261  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999955408999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN  104 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~  104 (176)
                      ++|.+|.|.+++|++|||+|||+.++|++|.+.|.+.|+.|+++..+++..+++|+++|.+||.|+..|+++|+.++..+
T Consensus         4 fIgqLI~Faii~f~~~KfVvP~~~k~l~eR~daIeggie~Ae~Aqaea~~al~~y~~qLaeAr~EAa~IreeAr~~~~~I   83 (445)
T PRK13428          4 FIGQLIGFAVIVFLVVRFVVPPVRRLMAAQQDAVRQQLADSATAADKLAEADQAHAKAVEDAKAEAHRVVEEARTDAERI   83 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999985279999999999999889999999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCH-HHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999999999999999999999999-841599-9999999999942106
Q gi|254781086|r  105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSD-ADVQKILDRKRDGIDA  175 (176)
Q Consensus       105 ~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~-~~~~~~i~~~~~~i~~  175 (176)
                      .++++.+++.|.++++.+++.+|+.+|.++..+++......+..+++|| +..+.| ......||++++++|+
T Consensus        84 ~ae~raqA~~Ea~RI~~~g~~Qiea~Rqq~v~~LR~e~G~~av~lA~~iVge~l~D~a~qs~tVDRFL~eLd~  156 (445)
T PRK13428         84 AEQLRAQADVEAERIKVQGARQVQLLRQQLIRQLRLELGHESVRQARELVRNHVADPAQQSATVDRFLDELDA  156 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999988889999999989999999999999999999879999999999865404388876159888999871


No 16 
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=99.94  E-value=1.1e-24  Score=172.41  Aligned_cols=138  Identities=20%  Similarity=0.272  Sum_probs=131.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98859887688999999999999999999955408999999999999999999999999999999999999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE   92 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~   92 (176)
                      |-.+||.    .+||.+|+|++|+|+|++|+||||.++|++|++.|.+++++|++.+.+++.+..+|+..|.+||.++..
T Consensus         2 ml~~n~~----~~i~~~i~FliL~~iL~kflykPi~k~ld~R~~~I~~~l~~A~~~~~ea~~l~~e~e~~L~~Ar~ea~~   77 (141)
T PRK08476          2 MLDINPY----LMLLTFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSESVEINAEIEAILKNAREEANK   77 (141)
T ss_pred             CCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6577677----999999999999999999958789999999999999889999998999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999998
Q gi|254781086|r   93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLG  154 (176)
Q Consensus        93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~  154 (176)
                      ++++++.++.+..++.+.+++.++++.+..+..+|+.++.++..++++.+.+++..+++|+.
T Consensus        78 ii~~A~~~A~~~~~~~~~~Ar~eae~~~~~a~~~ie~ek~~a~~~L~~qv~~Ls~~ia~Ki~  139 (141)
T PRK08476         78 IRQEAIAAAKEEAEQKIEAKKEELESKYEAFAQQLANQKQELKEQLLSQMPEFKEALNAKLS  139 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999889999999998673


No 17 
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=99.94  E-value=1.5e-24  Score=171.53  Aligned_cols=139  Identities=19%  Similarity=0.303  Sum_probs=132.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98859887688999999999999999999955408999999999999999999999999999999999999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE   92 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~   92 (176)
                      |..||.     .+||.+|+|++|||+|++|+||||.++|++|++.|.+++++|+..+.+++.+..+|+..|.+|+.++..
T Consensus         1 m~~~n~-----Tl~~q~i~Flil~~il~k~l~~Pi~~~ld~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~ea~~   75 (140)
T PRK07353          1 LFDFDA-----TLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKEKLAEAEKLEAQYEQQLASARKQAQQ   75 (140)
T ss_pred             CCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             915128-----899999999999999999988889999999999998889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999841
Q gi|254781086|r   93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFS  156 (176)
Q Consensus        93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~  156 (176)
                      ++++++.++....++.+.+++.++++.+.+++.+|+.++..+..++++.+.+++..+++|+.+.
T Consensus        76 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~A~~~Ie~ek~~a~~~l~~ev~~la~~ia~Kilg~  139 (140)
T PRK07353         76 VIAEAEAEADKLYAEALAEAQAEAQASKEKARREIEQQKQSALAQLEQQVDALSRQILEKLLAA  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999999999999999999999999999999999999999999987669


No 18 
>TIGR01144 ATP_synt_b ATP synthase F0, B subunit; InterPro: IPR005864   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient.   This entry represents subunit B from the F0 complex in F-ATPases found in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B .   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=99.94  E-value=3.5e-24  Score=169.29  Aligned_cols=145  Identities=20%  Similarity=0.314  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999554089999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQ  108 (176)
Q Consensus        29 ~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~  108 (176)
                      +|+|++|+||++||+||||.++|+.|+..|.++|..|+..++++..+..+.+..|.+||.++..|++.|........++.
T Consensus         2 ~~~F~llv~f~~KY~w~Pl~~~~~~R~~~IA~~L~~AE~~~~~~~~~~~~~~~~l~~AK~~A~~ii~~A~k~~~~~~ee~   81 (147)
T TIGR01144         2 LISFILLVWFCKKYVWPPLAKAIETRQKKIADDLASAERAKKEAALAQKEAQVLLKEAKDEAQEIIENANKRGSEILEEI   81 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999886237999999988998598899999988889999989889999888888899999878888869999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999-84159999999999999421
Q gi|254781086|r  109 REVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI  173 (176)
Q Consensus       109 ~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i  173 (176)
                      ..+|+.+..+++.+++.+|+.++.++.++|+..+.++|..+++|+ ..++++.....+||+++..+
T Consensus        82 ~~~A~~e~~ki~~~A~~EI~~~~~~Ar~~Lr~~Va~L~V~~AeKii~~~iD~~~~~d~id~~~~~l  147 (147)
T TIGR01144        82 KAEAREEREKILASARAEIEAEKERAREELRKQVADLAVAGAEKIIEREIDKQAQKDLIDKLVAEL  147 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999898899999988445999999999999999999999999999988789999888999987319


No 19 
>CHL00167 consensus
Probab=99.92  E-value=5.3e-22  Score=155.82  Aligned_cols=165  Identities=15%  Similarity=0.101  Sum_probs=153.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53346899885988768899999999999999999995540899999999999999999999999999999999999999
Q gi|254781086|r    6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAI   85 (176)
Q Consensus         6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~e   85 (176)
                      +.+++||+ +||+..|.+.+    |||+|++++|.||+.+|+.++|+.|+..|..++.+|++...+|...+.+++.+|..
T Consensus        15 ~~~~~~gF-glNtnilETNl----INl~ivigiL~~fg~~~L~~~L~~Rke~I~~~I~eAE~r~~eA~~~L~eak~~L~q   89 (182)
T CHL00167         15 ELSNEKSF-GFNPDILEANV----INILILLSGLIYLGKNFLGSSLEERQQKVLEAIQESEERLEQANSRLSESEKQLAQ   89 (182)
T ss_pred             CCCCCCCC-CCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12025886-77743999999----99999999999984676898999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999-984159999999
Q gi|254781086|r   86 ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQK  164 (176)
Q Consensus        86 ak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~  164 (176)
                      |+.++.+|+.+++..++...++...+++.+++++...+...|..++.++..+++..+..++..-+.+ +...++++.+.+
T Consensus        90 A~~eA~~Ir~~a~~~ae~~k~~i~~~a~~d~erl~~~a~~~I~~E~~ra~~qlr~qv~~lAl~ka~~~L~~~Ld~~~q~~  169 (182)
T CHL00167         90 AQIVIEQIKKEAEKTARKVKSSILAQGKLDIERLTNNGKSSIETAEKQIKKQIQQQITFLAIKRVTLQLENQMTPNLQLR  169 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             99999999999999999999999999999999999999989999999999999999999999999999886649999999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999942106
Q gi|254781086|r  165 ILDRKRDGIDA  175 (176)
Q Consensus       165 ~i~~~~~~i~~  175 (176)
                      +||.++..+.+
T Consensus       170 lId~~I~~Lgg  180 (182)
T CHL00167        170 IIDNNIAKLGG  180 (182)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998679


No 20 
>pfam00430 ATP-synt_B ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006
Probab=99.91  E-value=2.9e-22  Score=157.43  Aligned_cols=131  Identities=24%  Similarity=0.233  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999955408999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN  104 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~  104 (176)
                      ++|.+|+|++|||+|++|+||||.++|++|++.|.++++.|+..+.+++..+.+|+..|.+++.++..++++++.++...
T Consensus         2 l~~qlI~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~ea~~~~~~~e~~l~~a~~ea~~i~~~a~~~a~~~   81 (132)
T pfam00430         2 LETNLINFLILVGLLIYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKL   81 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88899999999999999979889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999984
Q gi|254781086|r  105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF  155 (176)
Q Consensus       105 ~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~  155 (176)
                      .+..+.+++.++++++.+++..|..++..+..++++.+.+++..+++|+.+
T Consensus        82 ~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~e~~~la~~~aekilG  132 (132)
T pfam00430        82 KEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQVAALAVQIAEKLLG  132 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999999999999999999999999999999999976559


No 21 
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.91  E-value=1e-21  Score=154.03  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=144.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85988768899999999999999999995540899999999999999999999999999999999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII   94 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii   94 (176)
                      .+|.-|++.|    +|||+||+|+|++|+|+||.++|++|++.|...+.+|++.+.+|++...+|+.++.+++.++..++
T Consensus         2 ~idw~T~~~q----~iNfliL~~lL~rFl~~Pv~~~i~~R~~~I~~~l~~A~~~~~eA~~~~~~~e~~~~~~~~e~~~~l   77 (246)
T TIGR03321         2 LIDWFTVIAQ----LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLL   77 (246)
T ss_pred             CCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0109999999----999999999999996889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999841599999-99999999421
Q gi|254781086|r   95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADV-QKILDRKRDGI  173 (176)
Q Consensus        95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~-~~~i~~~~~~i  173 (176)
                      ++++.+++...+....+++.+++.....+...+..++......+.+.+...+..++.|+...+.++.. ..+++.+++.+
T Consensus        78 ~~A~~eAe~er~~ll~~Ar~eae~~r~~~~~~l~~E~~~~~~~l~~r~~~~~~~ia~k~L~~Lad~~le~~~v~~f~~rL  157 (246)
T TIGR03321        78 TKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRL  157 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999998663247999999999998


Q ss_pred             H
Q ss_conf             0
Q gi|254781086|r  174 D  174 (176)
Q Consensus       174 ~  174 (176)
                      .
T Consensus       158 ~  158 (246)
T TIGR03321       158 R  158 (246)
T ss_pred             H
T ss_conf             7


No 22 
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=99.89  E-value=1.1e-20  Score=147.75  Aligned_cols=145  Identities=19%  Similarity=0.271  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76889999999999999999999554089999999999999999999999999999999999999999999999999999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVA   99 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~   99 (176)
                      .|++..||++|+|++|++++|+.+.++|.+.||.|...|.+++++|++++++|+.++.+|++++.+++.++.+|++.|+.
T Consensus         2 ~fiDatFWVaISF~IFv~Liy~k~pk~I~~~LD~kI~eIK~~ideAekLkeEAk~lL~e~ekKi~~~~~e~~emI~~Ak~   81 (154)
T PRK06568          2 NFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNE   81 (154)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97540699999999999999987589999889999999999998999878999999999999998789999999998689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999841--59999999
Q gi|254781086|r  100 AAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFS--VSDADVQK  164 (176)
Q Consensus       100 ~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~--~~~~~~~~  164 (176)
                      ++++...+...+..+.++.+...|++.|.+++.+|..++++.+++++..+++++..+  +++.++.+
T Consensus        82 ~aEk~i~~~~kk~~~~~e~kkk~A~~kI~Q~K~~AikdIkn~~~~~~i~~v~~~~kn~~~s~~~i~~  148 (154)
T PRK06568         82 VTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYFQSVKLSESNIAK  148 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             9999999999999999998898699999999999999999999999999999999760010778988


No 23 
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=99.85  E-value=6.9e-19  Score=136.56  Aligned_cols=140  Identities=16%  Similarity=0.171  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999995540899999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ  103 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~  103 (176)
                      .+||.+|||+||+.+||||+++||.+++..|++.|.++|++++....++++.+.+++++|.+|+.++.+|+..|+.+++.
T Consensus        26 Dii~r~iNf~I~~gIL~yf~~kpi~~~l~~R~~~I~~~L~eae~~~~eA~~~l~~~~~kLe~Ak~eA~~Iie~Akkeae~  105 (170)
T PRK08475         26 DIIERTINFLIFVGILWYFAAKPIKNFYKSRINSISKRLEEIQAKLKESKEKKKDALKKLEEAKEKAELIVETAKKEAYI  105 (170)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             05999999999999999992878999999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999998415999999999
Q gi|254781086|r  104 NLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKIL  166 (176)
Q Consensus       104 ~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i  166 (176)
                      ..+....+++.+++++..+++..|+.+.+++..++++.+.   .++...=...++.++.-.++
T Consensus       106 ~kq~I~~~a~~eie~L~~~a~e~i~~E~rka~~el~~eil---~e~~~~~~~~l~~~~~~~~~  165 (170)
T PRK08475        106 LTQKIEKQTKDDIENLIKSFEEQMDFEVRKIKRELVEEIL---NELFESKKVSLDQSECVNII  165 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999---99872713456899999999


No 24 
>pfam02326 YMF19 Plant ATP synthase F0. This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).
Probab=99.33  E-value=4.3e-12  Score=94.62  Aligned_cols=71  Identities=35%  Similarity=0.606  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8859887688999999999999999999955408999999999999999999999999999999999999999
Q gi|254781086|r   14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIA   86 (176)
Q Consensus        14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~ea   86 (176)
                      ||||+.||++|+||++|.|+++|+++.++++|+|.++++.|+..+..... + ..+.+-......++..+.+.
T Consensus         1 PQLD~~t~~sQ~fWl~~~f~~~y~~~~~~~lP~i~~il~~R~~~~~~~~~-~-~~~~~~~~~~~~~d~~i~~~   71 (84)
T pfam02326         1 PQLDKFTYFTQFFWLCLFFFTFYIFLLNFILPKISRILKLRKKLLSSLIS-S-KLGKEQSLLGVSKDSLLANS   71 (84)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHCCCCCCCHHHHHHHHHHC
T ss_conf             99861440999999999999999999993304588999999999998888-8-75437310003179999975


No 25 
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=99.13  E-value=8.6e-08  Score=68.03  Aligned_cols=148  Identities=14%  Similarity=0.207  Sum_probs=112.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf             99885988768899999999999999999995540899---999999999999999999----99999999999999999
Q gi|254781086|r   12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSS---IMEVRRNLISSDQEKMDS----AKREVESMISSYEESLA   84 (176)
Q Consensus        12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~---~l~~R~~~I~~~l~~A~~----~~~eae~~~~~~e~~l~   84 (176)
                      =+|.+  -.|+.|++-++|.+++|..++|+.+.+-+..   -+.+--+.-...-++|+.    .+.....+..+.++.+.
T Consensus        44 lfPn~--~~Fia~lIaF~ILl~lL~k~awKPI~k~Ld~R~~kI~~~L~~Aekar~EAe~ll~e~e~~L~eAr~EA~eII~  121 (201)
T PRK06231         44 LFPNF--WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID  121 (201)
T ss_pred             HCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77886--9999999999999999999978789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999-98415999999
Q gi|254781086|r   85 IARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQ  163 (176)
Q Consensus        85 eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~  163 (176)
                      +|+.++..+.++...++....+..+.+++.++++...++..++       ..++.+.++..+..++++ +..+.++.-++
T Consensus       122 ~Ak~~Ae~~~~ei~~~A~~eA~~i~e~A~~eIe~Ek~~A~~el-------r~eva~LAv~aAeKiI~k~Ld~~~~~~LId  194 (201)
T PRK06231        122 QANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQL-------QKESVELAMLAAEELIKKKVDREDDDKLVD  194 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999-------999999999999999986679998999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781086|r  164 KILDR  168 (176)
Q Consensus       164 ~~i~~  168 (176)
                      +.|++
T Consensus       195 e~Ike  199 (201)
T PRK06231        195 EFIRE  199 (201)
T ss_pred             HHHHH
T ss_conf             99865


No 26 
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=99.04  E-value=4.3e-07  Score=63.70  Aligned_cols=149  Identities=11%  Similarity=0.153  Sum_probs=106.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q ss_conf             59887688999999999999999-999955408---9999999999999999999999999----999999999999999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWV-THRFILPRL---SSIMEVRRNLISSDQEKMDSAKREV----ESMISSYEESLAIAR   87 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~i-l~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~ea----e~~~~~~e~~l~eak   87 (176)
                      |||+||.  ++.++|+|++++++ ++..+..-+   ...+..--+.-...-++|+....+.    ..+..+.+..+.+|+
T Consensus         1 ~d~~FW~--~I~fvi~~~ll~~~~~p~~i~~~Ld~R~~~I~~~l~~Ae~~~~eAe~~~~e~e~~l~~A~~ea~~Ii~~A~   78 (159)
T PRK09173          1 MDATFWA--FVGLVLFLALVVYLKVPGMIGRSLDERADRIKNELDEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAE   78 (159)
T ss_pred             CCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9812999--99999999999999778999999999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999-98415999999999
Q gi|254781086|r   88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKIL  166 (176)
Q Consensus        88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i  166 (176)
                      .++..++++++.++....+.....++.++.....+|..+       ...++.+.+...+..++.+ |..+.++..++..+
T Consensus        79 ~~a~~~~~~~~~~a~~~~~~~~~~Ae~~I~~~~~~A~~e-------lk~~~~~lai~~a~kii~~~ld~~~~~~Li~~~i  151 (159)
T PRK09173         79 REAEALTAEAKRKTEEYVARRNKLAEQKIAQAEADAINA-------VRASAVDLAVAAAGKLLAEKVDAKAAGELFKDAL  151 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             999999999999999999999998999999999999999-------9999999999999999986679998999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999421
Q gi|254781086|r  167 DRKRDGI  173 (176)
Q Consensus       167 ~~~~~~i  173 (176)
                      ++.-..+
T Consensus       152 ~ev~~~l  158 (159)
T PRK09173        152 AQVKTRL  158 (159)
T ss_pred             HHHHHHC
T ss_conf             9997645


No 27 
>pfam05405 Mt_ATP-synt_B Mitochondrial ATP synthase B chain precursor (ATP-synt_B). The Fo sector of the ATP synthase is a membrane bound complex which mediates proton transport. It is composed of nine different polypeptide subunits (a, b, c, d, e, f, g F6, A6L).
Probab=98.95  E-value=1.6e-06  Score=60.22  Aligned_cols=145  Identities=12%  Similarity=0.113  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999554089999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   26 FWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNL  105 (176)
Q Consensus        26 fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~  105 (176)
                      |+.+++|++|++++++.+.|++...+|+|.+.|.+.++.++..+.++-+..-++++.+...-.....+.+-.++.+.-..
T Consensus        17 ~~val~fi~f~~~~~K~~G~~i~~~lD~~~e~i~~~l~~~r~~~~~a~~~~ie~~k~~~~~~~~~~~l~~~~ke~~al~~   96 (163)
T pfam05405        17 TIVALCFIGFLIFVYKSLGPSIKEWLDKRIEKIQDELNQSRNLHEKALKERIEYVKKLQSVVEETKVLFEVSKETVALEA   96 (163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998108899999998999999999888878999999999999999999989999998246799777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999984159999-999999999421
Q gi|254781086|r  106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDAD-VQKILDRKRDGI  173 (176)
Q Consensus       106 e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~-~~~~i~~~~~~i  173 (176)
                      +....+-...+...   +...++..-.--...-+..=..+..-+..++..++++.. .++.+.+.+.++
T Consensus        97 e~~~~~~~~~v~~e---vk~~Ld~~v~~e~~~r~~~Q~~~v~~v~~~V~~~i~~~~~~k~~l~~~I~~l  162 (163)
T pfam05405        97 EAFERELQAALARE---IKSKLDTLVRKESSVRQREQDHLVNWVISSVLKELSPPKFQKKSLQESIADL  162 (163)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999---9999999999998999999999999999999987079167999999998860


No 28 
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=98.95  E-value=2.4e-06  Score=59.13  Aligned_cols=140  Identities=10%  Similarity=0.100  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999554089---9999999999999999999999----99999999999999999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRLS---SIMEVRRNLISSDQEKMDSAKR----EVESMISSYEESLAIARAHAKEIIDK   96 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi~---~~l~~R~~~I~~~l~~A~~~~~----eae~~~~~~e~~l~eak~ea~~ii~~   96 (176)
                      |++.++|.|++|+.++|+.+..-+.   ..+..--+.-...-.+|+....    ....+..+....+.+|+.++..+..+
T Consensus        24 q~I~F~il~~ll~kf~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~a~~ea~~Ii~~A~~~Ae~~~~~  103 (173)
T PRK13453         24 QVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQ  103 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999989899999999999999889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999-984159999999999999
Q gi|254781086|r   97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDRKR  170 (176)
Q Consensus        97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~~~  170 (176)
                      ...++....+..+.+++.+++.....+.       .+...++...+..++..++.+ +..+..+..+++.+++.-
T Consensus       104 ~~~~A~~ea~~i~~~A~~~Ie~ek~~a~-------~elr~ei~~lav~~A~Kil~~~l~~~~~~~LId~~i~e~G  171 (173)
T PRK13453        104 IIHEANVRANGMIETAQSEINSQKERAI-------ADINNQVSELSVLIASKVLRKEISEQDQKALVDKYLKEAG  171 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999999999-------9999999999999999999867699989999999998617


No 29 
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=98.92  E-value=2.1e-06  Score=59.44  Aligned_cols=148  Identities=12%  Similarity=0.122  Sum_probs=110.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_conf             88598876889999999999999999999554089---99999999999999999999999999----999999999999
Q gi|254781086|r   14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLS---SIMEVRRNLISSDQEKMDSAKREVES----MISSYEESLAIA   86 (176)
Q Consensus        14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~---~~l~~R~~~I~~~l~~A~~~~~eae~----~~~~~e~~l~ea   86 (176)
                      |.+..-+|  +++.++|.|++|+.++|+.+..-+.   +.+..--+.-.+.-.+|+....+.+.    +..+....+.+|
T Consensus        14 ~n~~~~iw--~~i~F~il~~il~kf~~~pi~~~Ld~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~A~~ea~~Ii~~A   91 (173)
T PRK13460         14 VNPGLVVW--TLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEA   91 (173)
T ss_pred             CCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98779999--9999999999999996888999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999-9841599999999
Q gi|254781086|r   87 RAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKI  165 (176)
Q Consensus        87 k~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~  165 (176)
                      +.++..+.++...++....+....+++.+++....++..++       ..++...++.++..++.+ +..+.....+++.
T Consensus        92 ~~~Ae~~~~~~~~~A~~ea~~i~~~A~~~Ie~ek~~A~~~l-------r~ei~~lav~~A~kii~~~ld~~~~~~lid~~  164 (173)
T PRK13460         92 KSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQL-------QNQIVEMTITIASKVLEKQLKKEDYKAFIETE  164 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999-------99999999999999998775999899999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781086|r  166 LDRKR  170 (176)
Q Consensus       166 i~~~~  170 (176)
                      +++.-
T Consensus       165 i~elg  169 (173)
T PRK13460        165 LAKLG  169 (173)
T ss_pred             HHHHH
T ss_conf             98730


No 30 
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=98.80  E-value=5e-06  Score=57.16  Aligned_cols=155  Identities=12%  Similarity=0.104  Sum_probs=105.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_conf             645334689988598876889999999999999999999554089---999999999999999999999----9999999
Q gi|254781086|r    4 SSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLS---SIMEVRRNLISSDQEKMDSAK----REVESMI   76 (176)
Q Consensus         4 ~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~---~~l~~R~~~I~~~l~~A~~~~----~eae~~~   76 (176)
                      |.++.+.|==|++-.+..++-+    |.|++|++++|+++..-+.   ..|...-+.-.....+|+...    .....+.
T Consensus         9 ~e~~~~fg~n~~~l~~~iInf~----Il~~iL~~f~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~l~e~e~~l~~a~   84 (174)
T PRK07352          9 TEASGGFGLNLNLLETNLINLA----IVIGLLYYFLRGFLGKILERRREAILQALKEAEERLRKAAQALAEAQQKLAQAQ   84 (174)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9763788989128999999999----999999999598999999999999999999999999999999999999999879


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999999999-984
Q gi|254781086|r   77 SSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGF  155 (176)
Q Consensus        77 ~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~  155 (176)
                      .+.+..+.+|+.++..+.++...++....+.....++.+++....++..+       ...++...+...+..++.+ +..
T Consensus        85 ~ea~~Ii~~A~~~a~~~~~~~~~~A~~e~e~i~~~A~~~Ie~e~~~a~~e-------lr~ei~~lAi~~A~kil~~~ld~  157 (174)
T PRK07352         85 QEAERIRADAKARAEAIRQEIEKQAIEDMARLKQTAAADLSAEAERVIAQ-------LRREAAELAIAKAESQLPGRLDE  157 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             99999999999999999999999999999999999999999999999999-------99999999999999999877499


Q ss_pred             HCCHHHHHHHHHHH
Q ss_conf             15999999999999
Q gi|254781086|r  156 SVSDADVQKILDRK  169 (176)
Q Consensus       156 ~~~~~~~~~~i~~~  169 (176)
                      +.....++..|++.
T Consensus       158 ~~~~~lId~~I~~l  171 (174)
T PRK07352        158 AAQQRLIDRSIANL  171 (174)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999974


No 31 
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=98.76  E-value=2.1e-05  Score=53.34  Aligned_cols=138  Identities=12%  Similarity=0.129  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999955408---9999999999999999999999999999----999999999999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESM----ISSYEESLAIARAHAKEIIDK   96 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~----~~~~e~~l~eak~ea~~ii~~   96 (176)
                      |++.++|.|++|+.++|+.+..-+   .+.+..--+.-...-..|+....+.+..    ..+....+.+|+.++..+..+
T Consensus        11 q~inF~il~~il~kf~~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~a~~ea~~Ii~~A~~~A~~~~~~   90 (159)
T PRK13461         11 TIINFIILLLILKHFFFDKIKAVIDSRQSEIDEKIEKADEDAEKARELKLKNERILKSAKEEGKKIVEEYKSKAENVYEE   90 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999978889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999-9841599999999999
Q gi|254781086|r   97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDR  168 (176)
Q Consensus        97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~  168 (176)
                      ...++....+..+.+++.+++....++.       .+...++.+.+..++..++.+ +..+.+...++..+++
T Consensus        91 i~~~A~~ea~~i~~~A~~~Ie~e~~~a~-------~el~~ev~~la~~~A~kil~~~ld~~~~~~lid~~i~e  156 (159)
T PRK13461         91 IVKEAHEEAESIIERAKLEIQREKEKAE-------YEIKNQAVDLAVLLSSKALEESIDESEHRELIKDFISK  156 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999-------99999999999999999998775999899999999978


No 32 
>pfam00430 ATP-synt_B ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006
Probab=98.61  E-value=5.4e-05  Score=50.73  Aligned_cols=124  Identities=15%  Similarity=0.210  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf             7688999999999999999999955408---9999999999999999999999999999999----99999999999999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESMISS----YEESLAIARAHAKE   92 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~----~e~~l~eak~ea~~   92 (176)
                      ||..|++.++|.|++|++++|..+..-+   .+.+..--+.......+|+....+.+..+.+    ....+.+++.++..
T Consensus         1 tl~~qlI~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~ea~~~~~~~e~~l~~a~~ea~~i~~~a~~~a~~   80 (132)
T pfam00430         1 TLETNLINFLILVGLLIYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQK   80 (132)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98889999999999999997988999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLV  150 (176)
Q Consensus        93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~  150 (176)
                      ..+....++....+....+++.+++.....+..++.       +++.+.+.+++..++
T Consensus        81 ~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~-------~e~~~la~~~aekil  131 (132)
T pfam00430        81 LKEEILAEAQKDAERLLESARAEIEQEKEQALAELR-------QQVAALAVQIAEKLL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999999999999999-------999999999997655


No 33 
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=98.57  E-value=7e-05  Score=50.06  Aligned_cols=157  Identities=17%  Similarity=0.186  Sum_probs=95.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5334689988598876889999999999999999999554089999999-999999999999999999999999999999
Q gi|254781086|r    6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLA   84 (176)
Q Consensus         6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R-~~~I~~~l~~A~~~~~eae~~~~~~e~~l~   84 (176)
                      +++..++-|+| |-+=++ .|-.=|+.+++.|++-||++.   +++=-| ...+.+.-+.-..--++|+++..+.++   
T Consensus        12 ~~~~~~~~~Gm-PQld~~-~f~sQiFWl~i~F~ily~vl~---k~~lPrI~~vLe~R~~~I~~dL~~Ae~~k~eAe~---   83 (181)
T PRK13454         12 AADAAASAPGM-PQLDFD-TFPNQIFWLLVTLVAIYFVLT---RVALPRIGAVLAERQGTITNDLAAAEELKQKAVE---   83 (181)
T ss_pred             HHHHCCCCCCC-CCCCCH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf             76503457999-999902-407899999999999999999---9999888989999999999889999999999999---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999999999999999999999999999-------9999999999998415
Q gi|254781086|r   85 IARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI-------VGEVTKDLVRKLGFSV  157 (176)
Q Consensus        85 eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~-------a~~~a~~i~~kl~~~~  157 (176)
                       +..+....+.+|+.++..++.+.+.+++.+++....+++.+++.....+..+|...       +..++..++..|...+
T Consensus        84 -~~~~ye~~L~~Ar~eA~~ii~eAr~~a~~~~~~~~~~a~~el~~~i~~AE~~I~~~K~~Am~~i~~iA~d~a~~Iv~kL  162 (181)
T PRK13454         84 -AEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL  162 (181)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -9999999999999999999999999999999999999999999999999999999999889999999999999999998


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             99999999999994
Q gi|254781086|r  158 SDADVQKILDRKRD  171 (176)
Q Consensus       158 ~~~~~~~~i~~~~~  171 (176)
                      ........|...++
T Consensus       163 ~gk~~~~~v~aaV~  176 (181)
T PRK13454        163 GGKADAAAVDAAVA  176 (181)
T ss_pred             HCCCCHHHHHHHHH
T ss_conf             57587788999999


No 34 
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=98.53  E-value=9.5e-05  Score=49.22  Aligned_cols=138  Identities=14%  Similarity=0.184  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999955408---99999999999999999999999999999----99999999999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESMI----SSYEESLAIARAHAKEIIDK   96 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~~----~~~e~~l~eak~ea~~ii~~   96 (176)
                      |++.++|.+++|+++++..+..-+   ...+..--+.....-.+|+....+.+..+    .+....+.+++.++.....+
T Consensus        10 ~~I~F~il~~ll~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~~a~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~   89 (156)
T PRK05759         10 QLIAFLILVWFCMKFVWPPIMKALEERQKKIADGLAAAERAKKELEAAQAKAEEQLAEARAEAAEIIEQAKKRAAQIIEE   89 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999978789999999999999899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999-9841599999999999
Q gi|254781086|r   97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDR  168 (176)
Q Consensus        97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~  168 (176)
                      ...++....+.....++.+++....++..+       ...++.+.+..++..++++ +..+..+..+++.|++
T Consensus        90 ~~~~a~~e~~~~~~~a~~~I~~e~~~a~~~-------l~~~i~~la~~~a~kil~~~l~~~~~~~lid~~i~~  155 (156)
T PRK05759         90 AKAEAEAEAARIKAQAQAEIEQERKRAREE-------LRKQVADLAVAGAEKILGRELDAAAHSDLIDKLIAE  155 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999-------999999999999999988677999899999998743


No 35 
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=98.51  E-value=7.7e-05  Score=49.80  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999554089999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   26 FWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNL  105 (176)
Q Consensus        26 fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~  105 (176)
                      .|+.+.. |-|+++..++++-+-+   -=...+...-+..+..-++|+....+    ......+....+.+++.++..++
T Consensus        23 ~Tl~~q~-i~FliL~~lL~kf~~~---Pi~~~ld~R~~~I~~~l~~Ae~~~~e----a~~~~~eye~~L~~Ar~Ea~~ii   94 (156)
T CHL00118         23 ATLPLMA-LQFLLLMVLLNAIFYK---PIGKILDEREEYIRSNLAKASSKLAK----ANELTAQYEEQLSKARKEAQLLI   94 (156)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999-9999999999999898---99999999999999889999999999----99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999
Q gi|254781086|r  106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDL  149 (176)
Q Consensus       106 e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i  149 (176)
                      ++.+.+++...+..+.+++.+++....++..++...-...-..+
T Consensus        95 ~~A~~~a~~~~~~i~~~A~~ea~~~i~~A~~eIe~ek~~a~~el  138 (156)
T CHL00118         95 AQSQKEAQEIVQEELKQAQKNAESLVEEATKQLEIQKEQALKSL  138 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999


No 36 
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=98.49  E-value=0.00012  Score=48.61  Aligned_cols=137  Identities=12%  Similarity=0.163  Sum_probs=93.7

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999-99999999955408999---999999999999999999999----999999999999999999999999999999
Q gi|254781086|r   30 IIFG-IFYWVTHRFILPRLSSI---MEVRRNLISSDQEKMDSAKRE----VESMISSYEESLAIARAHAKEIIDKVVAAA  101 (176)
Q Consensus        30 I~F~-il~~il~~~~~~pi~~~---l~~R~~~I~~~l~~A~~~~~e----ae~~~~~~e~~l~eak~ea~~ii~~a~~~a  101 (176)
                      |+++ ++|+.++..+..-+-+=   +..--+.-..--++|+....+    ......+.++.+.+|+.++..+.++++.++
T Consensus        38 if~~iL~~~~vp~~I~~~LD~R~~~I~~dLdeAe~lreEAe~lLaeye~~l~~A~~EA~~Ii~~Ak~~A~~~~~~~~~~a  117 (184)
T PRK13455         38 LFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVANARDEAQAAAEQAKADL  117 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999955899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999-984159999999999999421
Q gi|254781086|r  102 EQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDRKRDGI  173 (176)
Q Consensus       102 ~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~~~~~i  173 (176)
                      ++.++.....++.++++...++..+|.       +.+...+...+..++.+ +..+..+..+++.|++.-..+
T Consensus       118 ~~~i~r~~~~Ae~~I~~~k~~A~~eir-------~~a~~lAi~aA~kii~~~l~~~~~~~LId~~I~el~~~L  183 (184)
T PRK13455        118 EASIARRLAAAEDQIASAEAAAVRAVR-------DRAISVAVAAAADVIAKQMTAAEANALIDEAIKEVEAKL  183 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999998888-------999999999999999865799989999999999997655


No 37 
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=98.41  E-value=0.00018  Score=47.45  Aligned_cols=150  Identities=9%  Similarity=0.140  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88598876889999999999999999999554089999999-99999999999999999999999999999999999999
Q gi|254781086|r   14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE   92 (176)
Q Consensus        14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R-~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~   92 (176)
                      -+| |-+=+ ..|-.-|+.+++.|.+-||+..   +++--| ...+.+.-+....--++|+++..+.+..+.+-    ..
T Consensus        42 gg~-Pqld~-~t~~sQifWL~I~F~~lY~~~s---k~~lPrI~~vLe~R~~~I~~DLe~Ae~lk~EAe~~~a~Y----e~  112 (204)
T PRK09174         42 GVF-PPFDS-THYASQLLWLAITFGLFYLFLS---RVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAY----EQ  112 (204)
T ss_pred             CCC-CCCCH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_conf             999-99983-4508999999999999999999---997603777999999999879999999999999999999----99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCHHHH-HH
Q ss_conf             9999999999999999999999999999999999999999999999999-------999999999999841599999-99
Q gi|254781086|r   93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI-------VGEVTKDLVRKLGFSVSDADV-QK  164 (176)
Q Consensus        93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~-------a~~~a~~i~~kl~~~~~~~~~-~~  164 (176)
                      .+.+++.++..++.+.+.+++.+++....+.+.+|+.....+..+|...       +..++.+++..+...+....+ ..
T Consensus       113 ~LaeAR~eA~~Ii~~Ar~~a~~~~e~~~a~~ea~L~~kia~AE~~I~~~r~~Al~~V~~IA~d~A~~iV~~L~G~~v~~~  192 (204)
T PRK09174        113 ELAQARSKAASIAQAAREAAKAKAEAERAEIEASLEKKLKEAEERIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKA  192 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99999999999999999999999999999999999999999999999999987999999999999999999868999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999942
Q gi|254781086|r  165 ILDRKRDG  172 (176)
Q Consensus       165 ~i~~~~~~  172 (176)
                      -|...++.
T Consensus       193 ~v~~aV~a  200 (204)
T PRK09174        193 SVSAAVKA  200 (204)
T ss_pred             HHHHHHHH
T ss_conf             99999987


No 38 
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=98.34  E-value=0.00028  Score=46.38  Aligned_cols=134  Identities=10%  Similarity=0.122  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999955408-------999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   29 AIIFGIFYWVTHRFILPRL-------SSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAA  101 (176)
Q Consensus        29 ~I~F~il~~il~~~~~~pi-------~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a  101 (176)
                      +|.+++|+++++.++..-+       .+.|++=++.-.+.-..-.+.+.+..++..+.++.+.+|+..+..+..+...++
T Consensus        35 ~Ivi~iL~~f~~~~L~~~L~~R~~~I~~~I~eAE~~~~eA~~~L~e~~~~L~~A~~eA~~I~~~A~~~ae~~k~~i~~~a  114 (184)
T CHL00019         35 SVVLGVLIYFGKGVLSDLLDNRKQRILNTIRNSEERREEAIEKLEKARARLRQAEIEADEIRVNGYSEIEREKLNLINST  114 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999995999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999-98415999999999999
Q gi|254781086|r  102 EQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDRK  169 (176)
Q Consensus       102 ~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~~  169 (176)
                      ....+.....++.+++....++..+       ...++...+...+...+.+ |..+....-++..|+..
T Consensus       115 ~~e~erl~~~A~~~I~~E~~kA~~e-------lr~ev~~lAl~~a~k~L~~~Ld~~~q~~LId~~I~~L  176 (184)
T CHL00019        115 YEDLERLENYKNETIRFEQQRAINQ-------VRQQVFQLALQRALGTLNSCLNNELHLRTIDANIGLL  176 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999-------9999999999999999986649999999999999987


No 39 
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=98.34  E-value=0.00018  Score=47.50  Aligned_cols=108  Identities=15%  Similarity=0.218  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             688999999999999999999955408---99999999999999999999999----99999999999999999999999
Q gi|254781086|r   21 FLSQFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKR----EVESMISSYEESLAIARAHAKEI   93 (176)
Q Consensus        21 f~~q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~----eae~~~~~~e~~l~eak~ea~~i   93 (176)
                      |+.-+++++|.++|+||++++++..-+   ...+..+-+.++..+.+|.....    +.+.+..+++..+..|+.++..+
T Consensus        27 ii~r~iNf~I~~gIL~yf~~kpi~~~l~~R~~~I~~~L~eae~~~~eA~~~l~~~~~kLe~Ak~eA~~Iie~Akkeae~~  106 (170)
T PRK08475         27 IIERTINFLIFVGILWYFAAKPIKNFYKSRINSISKRLEEIQAKLKESKEKKKDALKKLEEAKEKAELIVETAKKEAYIL  106 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             59999999999999999928789999998999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999
Q gi|254781086|r   94 IDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID  128 (176)
Q Consensus        94 i~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~  128 (176)
                      ..+-..+++..++.....++..++.....+..++-
T Consensus       107 kq~I~~~a~~eie~L~~~a~e~i~~E~rka~~el~  141 (170)
T PRK08475        107 TQKIEKQTKDDIENLIKSFEEQMDFEVRKIKRELV  141 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999


No 40 
>TIGR01144 ATP_synt_b ATP synthase F0, B subunit; InterPro: IPR005864   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient.   This entry represents subunit B from the F0 complex in F-ATPases found in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B .   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=98.32  E-value=0.00031  Score=46.04  Aligned_cols=137  Identities=9%  Similarity=0.073  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999995540899999999--------9999999999999999999999999999999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR--------NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIID   95 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~--------~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~   95 (176)
                      |++.++|...+++=++|..+.. +.+.-.+..        ..=.+.-..-.........+..+....+..|+.....+.+
T Consensus         1 Q~~~F~llv~f~~KY~w~Pl~~-~~~~R~~~IA~~L~~AE~~~~~~~~~~~~~~~~l~~AK~~A~~ii~~A~k~~~~~~e   79 (147)
T TIGR01144         1 QLISFILLVWFCKKYVWPPLAK-AIETRQKKIADDLASAERAKKEAALAQKEAQVLLKEAKDEAQEIIENANKRGSEILE   79 (147)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9799999999998862379999-999889985988999999888899999898899998888888999998788888699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999-9841599999999999
Q gi|254781086|r   96 KVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDR  168 (176)
Q Consensus        96 ~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~  168 (176)
                      +++.+|....+.....++.|++....+|       +.....+|-..++.++..++.+ +.......-++.+|.+
T Consensus        80 e~~~~A~~e~~ki~~~A~~EI~~~~~~A-------r~~Lr~~Va~L~V~~AeKii~~~iD~~~~~d~id~~~~~  146 (147)
T TIGR01144        80 EIKAEAREEREKILASARAEIEAEKERA-------REELRKQVADLAVAGAEKIIEREIDKQAQKDLIDKLVAE  146 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999989889999998844599999999-------999999999999999999998878999988899998731


No 41 
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=98.30  E-value=0.00035  Score=45.75  Aligned_cols=86  Identities=12%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   64 KMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVG  143 (176)
Q Consensus        64 ~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~  143 (176)
                      ..+..-+.|+....    ...+++.+...++.+|+.++..++++.+.+++++.+..+.+++.+++..+..+..+|.....
T Consensus        42 ~I~~~l~~A~~~~~----ea~~l~~e~e~~L~~Ar~ea~~ii~~A~~~A~~~~~~~~~~Ar~eae~~~~~a~~~ie~ek~  117 (141)
T PRK08476         42 SIKNDLEKVKTNSS----ESVEINAEIEAILKNAREEANKIRQEAIAAAKEEAEQKIEAKKEELESKYEAFAQQLANQKQ  117 (141)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988999999899----99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254781086|r  144 EVTKDLVRKL  153 (176)
Q Consensus       144 ~~a~~i~~kl  153 (176)
                      .....+-+.+
T Consensus       118 ~a~~~L~~qv  127 (141)
T PRK08476        118 ELKEQLLSQM  127 (141)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999889


No 42 
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=98.27  E-value=2.8e-06  Score=58.68  Aligned_cols=50  Identities=28%  Similarity=0.562  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98859887688999999999999999999955408999999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQ   62 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l   62 (176)
                      |||||..+|+.|.+|.+|..+++|.++...++|++...+--|.....+..
T Consensus         1 MPQLD~~tyltQY~w~li~l~~lf~llv~~ILP~iq~ql~~R~~~~~g~~   50 (71)
T MTH00169          1 MPQLDTVTYLTQYIWTLIALFFLFSLLVNTILPWLQQQLVIRSKIVSGLE   50 (71)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98414999999999999999999999999981899999999999987641


No 43 
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=98.24  E-value=0.00046  Score=45.00  Aligned_cols=117  Identities=17%  Similarity=0.179  Sum_probs=91.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHH
Q ss_conf             98859887688999999999999999999955408999999999999999---99999999999999----999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQ---EKMDSAKREVESMI----SSYEESLAI   85 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l---~~A~~~~~eae~~~----~~~e~~l~e   85 (176)
                      |.=+||+||..=.  ++|+|+++|+-+++....-+-.-+.+=+..|.+..   ++|+....+.+..+    .+..+.+.+
T Consensus         1 ~~fiDatFWVaIS--F~IFv~Liy~k~pk~I~~~LD~kI~eIK~~ideAekLkeEAk~lL~e~ekKi~~~~~e~~emI~~   78 (154)
T PRK06568          1 MNFLDESFWLAVS--FVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEE   78 (154)
T ss_pred             CCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9975406999999--99999999987589999889999999999998999878999999999999998789999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999
Q gi|254781086|r   86 ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ  131 (176)
Q Consensus        86 ak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k  131 (176)
                      |+.++..++.+...+..+..+.....+.+.+.++..+|-++|..+-
T Consensus        79 Ak~~aEk~i~~~~kk~~~~~e~kkk~A~~kI~Q~K~~AikdIkn~~  124 (154)
T PRK06568         79 SNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEF  124 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6899999999999999999998898699999999999999999999


No 44 
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=98.16  E-value=0.0007  Score=43.90  Aligned_cols=147  Identities=18%  Similarity=0.236  Sum_probs=102.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             85988768899999999999999999995540899---9999999999999999999----9999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSS---IMEVRRNLISSDQEKMDSA----KREVESMISSYEESLAIAR   87 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~---~l~~R~~~I~~~l~~A~~~----~~eae~~~~~~e~~l~eak   87 (176)
                      .+++..++.+++-++|.++++++++|+.+.+-+.+   .+..--+.....-.+++..    ..+.+.+..++...+..|+
T Consensus         3 ~~~~~~~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~   82 (161)
T COG0711           3 NFNDTNILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAK   82 (161)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             52124799999999999999999968679999999999999889999998999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999-98415999999999
Q gi|254781086|r   88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKIL  166 (176)
Q Consensus        88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i  166 (176)
                      .++..+..+.+.+++...+.....+..+++....++..++..       ++...+..++..+..+ +......+.++..+
T Consensus        83 ~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~-------~~~~la~~~aekll~~~~~~~~~~~lid~~~  155 (161)
T COG0711          83 KEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRA-------EVAELAVAIAEKLLGKKVDEAAQKDLIDAFI  155 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998999999999999999999999999999999999999-------9999999999999898757898999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254781086|r  167 DR  168 (176)
Q Consensus       167 ~~  168 (176)
                      .+
T Consensus       156 ~~  157 (161)
T COG0711         156 AE  157 (161)
T ss_pred             HH
T ss_conf             86


No 45 
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=98.07  E-value=0.001  Score=42.85  Aligned_cols=120  Identities=12%  Similarity=0.155  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999955408---9999999999999999999999999999----999999999999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESM----ISSYEESLAIARAHAKEIIDK   96 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~----~~~~e~~l~eak~ea~~ii~~   96 (176)
                      |++.++|.|++|..++|+.+..-+   ...+..--+.....-.+|+....+.+..    ..+....+.+++.++....++
T Consensus        11 q~i~Flil~~il~k~l~~Pi~~~ld~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~ea~~ii~~A~~~a~~~~~~   90 (140)
T PRK07353         11 MAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKEKLAEAEKLEAQYEQQLASARKQAQQVIAEAEAEADKLYAE   90 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999988889999999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLV  150 (176)
Q Consensus        97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~  150 (176)
                      ...++....+..+.+++.+++....++..++.       +++.+.+..++..++
T Consensus        91 ~~~~A~~e~~~~~~~A~~~Ie~ek~~a~~~l~-------~ev~~la~~ia~Kil  137 (140)
T PRK07353         91 ALAEAQAEAQASKEKARREIEQQKQSALAQLE-------QQVDALSRQILEKLL  137 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999-------999999999999876


No 46 
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=97.96  E-value=2e-05  Score=53.45  Aligned_cols=49  Identities=27%  Similarity=0.618  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9885988768899999999999999999995540899999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSD   61 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~   61 (176)
                      |||||.++|.+|.-|.++.+..+++++..+++|.|..-.-=|+.-+..+
T Consensus         1 MPQLd~~~yltQY~Wtl~~Lf~L~~ll~~~ilP~ik~n~~IR~~l~~~~   49 (70)
T MTH00025          1 MPQLDTTTYLTQYRWTLIVLFLLLFFLVFFVLPTIKRNWLIRKSLMKKG   49 (70)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9850277989999999999999999999999899987499999998068


No 47 
>CHL00167 consensus
Probab=97.77  E-value=0.0036  Score=39.50  Aligned_cols=132  Identities=8%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999955408-------999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   29 AIIFGIFYWVTHRFILPRL-------SSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAA  101 (176)
Q Consensus        29 ~I~F~il~~il~~~~~~pi-------~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a  101 (176)
                      +|.+++|||+++.|+..-+       .+.+.+=.+...+.-+.-.+++.+..++..+.++...+++..+..+..+....+
T Consensus        37 ~ivigiL~~fg~~~L~~~L~~Rke~I~~~I~eAE~r~~eA~~~L~eak~~L~qA~~eA~~Ir~~a~~~ae~~k~~i~~~a  116 (182)
T CHL00167         37 LILLSGLIYLGKNFLGSSLEERQQKVLEAIQESEERLEQANSRLSESEKQLAQAQIVIEQIKKEAEKTARKVKSSILAQG  116 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999984676898999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999-984159999999999
Q gi|254781086|r  102 EQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILD  167 (176)
Q Consensus       102 ~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~  167 (176)
                      ....+.....++.+++....++..++.       .++...+..-+...+.+ +..+.-...++..|.
T Consensus       117 ~~d~erl~~~a~~~I~~E~~ra~~qlr-------~qv~~lAl~ka~~~L~~~Ld~~~q~~lId~~I~  176 (182)
T CHL00167        117 KLDIERLTNNGKSSIETAEKQIKKQIQ-------QQITFLAIKRVTLQLENQMTPNLQLRIIDNNIA  176 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             999999999999899999999999999-------999999999999998866499999999999999


No 48 
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=97.73  E-value=0.0041  Score=39.12  Aligned_cols=133  Identities=11%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999-9999999999999554089999999-9999999999999999999999999999999999999999999999999
Q gi|254781086|r   26 FWLA-IIFGIFYWVTHRFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ  103 (176)
Q Consensus        26 fw~~-I~F~il~~il~~~~~~pi~~~l~~R-~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~  103 (176)
                      ||.- |+.+++.|.+-|++..   +++--| ..-+...-+.-..--++|+....+.+..    ..+....+.+|+.++.+
T Consensus         8 ~~~sQifWL~itF~~ly~~~s---k~~lPri~~~le~R~~~I~~dl~~A~~~k~eae~~----~~~ye~~l~~Ak~eA~~   80 (157)
T PRK06569          8 TYYSQIFWLIVTFGLLYIFVY---KFITPKAEEIFNNRQTNIQDNITQADTLTLEVEKL----NKYYNEEIDKTNTEIDR   80 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf             408999999999999999999---99860487799989999998899999999999999----99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999998415999999999
Q gi|254781086|r  104 NLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKIL  166 (176)
Q Consensus       104 ~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i  166 (176)
                      +..+.+.+++.+++......+++|+..-.++..++.......-. -+.++..++....+.+++
T Consensus        81 i~~ea~~~l~~e~~~k~~~le~~l~~~i~~aekeI~~~k~~a~~-~i~~ia~eia~~iI~kl~  142 (157)
T PRK06569         81 LKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRT-NKSEAIIKLAVNIIEKIT  142 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999998787-699999999999999986


No 49 
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.68  E-value=0.0049  Score=38.65  Aligned_cols=102  Identities=15%  Similarity=0.197  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999999999-999
Q gi|254781086|r   69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGE-VTK  147 (176)
Q Consensus        69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~-~a~  147 (176)
                      ++-.++..++.+..+.+|+.++..|+++|+.+++.++.    +++++++......+..+...-+++...+++.+.. +..
T Consensus        19 ~EGVe~g~~eA~~II~~A~~qA~~Ii~~Ae~eAe~il~----~A~keAe~~~~~~~s~L~~A~rqav~aLk~~i~~~if~   94 (208)
T PRK01005         19 EETLKPAEDEAGAIVHNAKEQAKRIIEEAQEEAQQIIR----SAEETADQKLKQGESALVQAGKRSLESLKQAVENKIFR   94 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98777899999999999999999999999999999999----99999999999679999999999999999999999999


Q ss_pred             HHHHH-HHHHC-CHHHHHHHHHHHHHHHH
Q ss_conf             99999-98415-99999999999994210
Q gi|254781086|r  148 DLVRK-LGFSV-SDADVQKILDRKRDGID  174 (176)
Q Consensus       148 ~i~~k-l~~~~-~~~~~~~~i~~~~~~i~  174 (176)
                      ..+.. +.... +.....++|...++.++
T Consensus        95 ~~l~~~V~~~~~d~e~l~~LI~e~v~~~~  123 (208)
T PRK01005         95 ESLVEWLEHVLTDPEVSAKLVQALVQAIE  123 (208)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             99999999986589999999999999864


No 50 
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=97.59  E-value=0.0064  Score=37.93  Aligned_cols=99  Identities=19%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999999999999-9999
Q gi|254781086|r   74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKD-LVRK  152 (176)
Q Consensus        74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~-i~~k  152 (176)
                      .+.++.+..+.+|+.++..|++++..++.++.+....+++.+++++..+........-+...-..++.+.+-+.. ...+
T Consensus        13 ~A~~ea~~I~~eA~~ea~~I~~~a~~~ae~~~~~~~~~a~~ea~~~~~r~~ssA~Le~r~~~L~ak~e~i~~v~~~a~~~   92 (187)
T PRK02292         13 EARAEVSEIRAEADERAEEIIAEAEADAKDILGDAEAEAEEDIEQLRQQEISSANLEAKRARLNARKEVLEEVYNQVEDA   92 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999998779999999999999999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHH
Q ss_conf             984159999999999999421
Q gi|254781086|r  153 LGFSVSDADVQKILDRKRDGI  173 (176)
Q Consensus       153 l~~~~~~~~~~~~i~~~~~~i  173 (176)
                      | .+++.+....++...++..
T Consensus        93 L-~~l~~~~~~~llk~ll~~~  112 (187)
T PRK02292         93 I-ASLPGDKREELLKNLLDAD  112 (187)
T ss_pred             H-HCCCCHHHHHHHHHHHHHC
T ss_conf             8-6689115999999999874


No 51 
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.55  E-value=0.006  Score=38.12  Aligned_cols=52  Identities=15%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999
Q gi|254781086|r   76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI  127 (176)
Q Consensus        76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I  127 (176)
                      ..+.+..+.+|+.++..|+.+|+.+++.........++.-..+.+......|
T Consensus        37 ~~qA~~Ii~~Ae~eAe~il~~A~keAe~~~~~~~s~L~~A~rqav~aLk~~i   88 (208)
T PRK01005         37 KEQAKRIIEEAQEEAQQIIRSAEETADQKLKQGESALVQAGKRSLESLKQAV   88 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999679999999999999999999


No 52 
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=97.43  E-value=0.011  Score=36.56  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKD  148 (176)
Q Consensus        69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~  148 (176)
                      ++-.++..++.+..+.+|+.++..|+++|+.+++.++.+    ++++++.....++..+...-+.+...+++.....-..
T Consensus        14 ~eGVekg~~eA~~IIa~A~~~A~~Iv~~Ae~eAe~i~~~----AekeA~~~k~~~~~aL~~A~rd~ll~lk~~i~~~~~~   89 (198)
T PRK01558         14 KDGLEEAERLANEIILNAKEEAEAIVLKAEEEAKELKAK----AEKEANDYKRHSLEASRQAIRDLIIGFEKNLKSLFKA   89 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987889999999999999999999999999999999999----9998999999679999999999999999999999999


Q ss_pred             HHHH-HHHHCCHHHHHHHHHHHHHH
Q ss_conf             9999-98415999999999999942
Q gi|254781086|r  149 LVRK-LGFSVSDADVQKILDRKRDG  172 (176)
Q Consensus       149 i~~k-l~~~~~~~~~~~~i~~~~~~  172 (176)
                      .+.. +....+++...++|-...+.
T Consensus        90 ~v~~~v~~~~d~~~L~~lIl~v~~~  114 (198)
T PRK01558         90 ALKDEVAEVYDSNFLRELIIRVVDS  114 (198)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9999999863899999999999875


No 53 
>pfam05933 Fun_ATP-synt_8 Fungal ATP synthase protein 8 (A6L). This family consists of fungus specific ATP synthase protein 8 (EC:3.6.3.14). The family may be related to the ATP synthase protein 8 found in other eukaryotes pfam00895.
Probab=97.32  E-value=0.00024  Score=46.73  Aligned_cols=43  Identities=23%  Similarity=0.497  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9885988768899999999999999999995540899999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR   55 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~   55 (176)
                      ||||-|=+|.+|+.|..+.+.+++++..++++|.+.+..-.|.
T Consensus         1 MPQLvPfyf~N~i~~~f~~~~il~y~~SkyiLP~~~rl~vsR~   43 (47)
T pfam05933         1 MPQLVPFYFINQIVFTFAIISILLYLFSKYILPRIVRLYVSRL   43 (47)
T ss_pred             CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9854216763058899999999999999987899999999998


No 54 
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=97.29  E-value=0.015  Score=35.60  Aligned_cols=96  Identities=15%  Similarity=0.156  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHH
Q ss_conf             9999999999999955408---999999999999999999999999999999999----9999999----9999999999
Q gi|254781086|r   29 AIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESMISSYE----ESLAIAR----AHAKEIIDKV   97 (176)
Q Consensus        29 ~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e----~~l~eak----~ea~~ii~~a   97 (176)
                      +|.+.+|..++|+.+..-|   .+.+...-..-...-.+|+..+.+.+...++.+    ..+.+|+    .+...++.++
T Consensus        16 liL~~lL~rFl~~Pv~~~i~~R~~~I~~~l~~A~~~~~eA~~~~~~~e~~~~~~~~e~~~~l~~A~~eAe~er~~ll~~A   95 (246)
T TIGR03321        16 LILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEA   95 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999996889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999
Q gi|254781086|r   98 VAAAEQNLEFQREVFEKDLLHKLSNAQ  124 (176)
Q Consensus        98 ~~~a~~~~e~~~~~a~~ei~~~~~~a~  124 (176)
                      +.+++.........+..+-........
T Consensus        96 r~eae~~r~~~~~~l~~E~~~~~~~l~  122 (246)
T TIGR03321        96 REEADEIREKWQEALRREQAALSDELR  122 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999


No 55 
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=97.23  E-value=0.018  Score=35.17  Aligned_cols=143  Identities=15%  Similarity=0.153  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8768899999999999999999995540899---9999---999999999999-99999999999999999999999999
Q gi|254781086|r   19 STFLSQFFWLAIIFGIFYWVTHRFILPRLSS---IMEV---RRNLISSDQEKM-DSAKREVESMISSYEESLAIARAHAK   91 (176)
Q Consensus        19 ~~f~~q~fw~~I~F~il~~il~~~~~~pi~~---~l~~---R~~~I~~~l~~A-~~~~~eae~~~~~~e~~l~eak~ea~   91 (176)
                      ++|++|++-|+|.|++|+.+++-.+-+-+..   .|+.   |-..-+..++.+ ++.+.....+..++.....+|+.++.
T Consensus         2 ~~fIgqLI~Faii~f~~~KfVvP~~~k~l~eR~daIeggie~Ae~Aqaea~~al~~y~~qLaeAr~EAa~IreeAr~~~~   81 (445)
T PRK13428          2 STFIGQLIGFAVIVFLVVRFVVPPVRRLMAAQQDAVRQQLADSATAADKLAEADQAHAKAVEDAKAEAHRVVEEARTDAE   81 (445)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             13999999999999999999852799999999999998899999999999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHH-HHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999-98415999-99999999
Q gi|254781086|r   92 EIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDA-DVQKILDR  168 (176)
Q Consensus        92 ~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~-~~~~~i~~  168 (176)
                      .|+.+.+.++..+.+.++...+.+++...+++-.+       ...++...+++++.+++.. +.+....+ .++..+++
T Consensus        82 ~I~ae~raqA~~Ea~RI~~~g~~Qiea~Rqq~v~~-------LR~e~G~~av~lA~~iVge~l~D~a~qs~tVDRFL~e  153 (445)
T PRK13428         82 RIAEQLRAQADVEAERIKVQGARQVQLLRQQLIRQ-------LRLELGHESVRQARELVRNHVADPAQQSATVDRFLDE  153 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999998888999999998999999999999999-------9999879999999999865404388876159888999


No 56 
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=96.70  E-value=0.052  Score=32.34  Aligned_cols=51  Identities=18%  Similarity=0.063  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999
Q gi|254781086|r   75 MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQN  125 (176)
Q Consensus        75 ~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~  125 (176)
                      +.++.+..+.+|+.++..|+.++..+++...+....+++.+++........
T Consensus        15 A~~~a~~Il~eA~~eae~I~~~a~~~a~~~~~~~~~k~~~ea~~~~~r~~s   65 (198)
T PRK03963         15 AEQKIEYILSEARKEAEKIKEEARRRAEARAEWILRRAKTQAELEKQRIIA   65 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999999999999


No 57 
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=96.68  E-value=0.054  Score=32.22  Aligned_cols=53  Identities=15%  Similarity=0.105  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999
Q gi|254781086|r   76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID  128 (176)
Q Consensus        76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~  128 (176)
                      ..+.+..+.+|+.++..|+.+|+.++..........++.-....+...+..|.
T Consensus        32 ~~~A~~Iv~~Ae~eAe~i~~~AekeA~~~k~~~~~aL~~A~rd~ll~lk~~i~   84 (198)
T PRK01558         32 KEEAEAIVLKAEEEAKELKAKAEKEANDYKRHSLEASRQAIRDLIIGFEKNLK   84 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999989999996799999999999999999999


No 58 
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.67  E-value=0.054  Score=32.20  Aligned_cols=76  Identities=22%  Similarity=0.272  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999----999999999999999999999999999999999-99999999999999999999999999
Q gi|254781086|r   78 SYEESLAIARAHAKEI----IDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNE-IDDMQKKASQEVYSIVGEVTKDLVRK  152 (176)
Q Consensus        78 ~~e~~l~eak~ea~~i----i~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~-I~~~k~~a~~ei~~~a~~~a~~i~~k  152 (176)
                      +.++.+.+|+.++..+    ..++..++..........++.++.+.+-.++++ |+.....+...|.+...+-...++..
T Consensus        28 ea~~I~~~a~~~ae~~~~~~~~~a~~ea~~~~~r~~ssA~Le~r~~~L~ak~e~i~~v~~~a~~~L~~l~~~~~~~llk~  107 (187)
T PRK02292         28 RAEEIIAEAEADAKDILGDAEAEAEEDIEQLRQQEISSANLEAKRARLNARKEVLEEVYNQVEDAIASLPGDKREELLKN  107 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999999999999999999999999999999998779999999999999999999999999866891159999999


Q ss_pred             H
Q ss_conf             9
Q gi|254781086|r  153 L  153 (176)
Q Consensus       153 l  153 (176)
                      +
T Consensus       108 l  108 (187)
T PRK02292        108 L  108 (187)
T ss_pred             H
T ss_conf             9


No 59 
>PRK00106 hypothetical protein; Provisional
Probab=96.67  E-value=0.055  Score=32.19  Aligned_cols=85  Identities=11%  Similarity=0.018  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999999999955408999999999999999999999-999999999999999999999999999999999
Q gi|254781086|r   23 SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSA-KREVESMISSYEESLAIARAHAKEIIDKVVAAA  101 (176)
Q Consensus        23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~-~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a  101 (176)
                      .-++..+|.|++-|++.+        ..+..++..+...+..|+.. ..-..++..+.+..+.+|+.++..+..++.-++
T Consensus         6 ~~i~~~liG~~iG~~~~~--------~~~~~~k~~~~~~~~~a~~~A~~~~~~Ae~eA~~i~~~A~~eae~~kke~~leA   77 (535)
T PRK00106          6 LLVVSALIGLVLGYALIS--------IKLKSAKEAAELTLLNAEQEAVNLRGKAEVDAEHIKKTAKRESKALRKELLLEA   77 (535)
T ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998999999--------999888876898999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254781086|r  102 EQNLEFQREVFEKD  115 (176)
Q Consensus       102 ~~~~e~~~~~a~~e  115 (176)
                      +......+.+++.+
T Consensus        78 Kee~~~~r~e~e~e   91 (535)
T PRK00106         78 KEEARKYREEIEQE   91 (535)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 60 
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.54  E-value=0.067  Score=31.64  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   51 MEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL  120 (176)
Q Consensus        51 l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~  120 (176)
                      ++..+.......++++..+++++...++|++.+.+.+.+..+++.+++.++.+.+.+++.+++.-+....
T Consensus       523 l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~ea~~~i~~a~~e~~~~i~~lk  592 (780)
T PRK00409        523 LEELERELEEKAEEAEKLLKEAEKLKEELEEQKEKLQEREDKLLLEAEEEAQQAIKEAKKEAAEIIKELR  592 (780)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999


No 61 
>PRK12705 hypothetical protein; Provisional
Probab=96.53  E-value=0.067  Score=31.63  Aligned_cols=61  Identities=5%  Similarity=-0.029  Sum_probs=27.2

Q ss_pred             CCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             988598876--8899999999999999999995540899999999999999999999999999
Q gi|254781086|r   13 FPPFDTSTF--LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVE   73 (176)
Q Consensus        13 mpqld~~~f--~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae   73 (176)
                      ||++++..+  +.-+|-++|.|++.|++-+.+....+...=+..+..+.+.-.+++..+.++.
T Consensus         1 ~~~~~~~~~~~i~~l~~~~ig~~lg~~~~~~~~~~~~~~a~~~a~~i~~~a~ke~~~~r~e~q   63 (485)
T PRK12705          1 MKMQYLVLTILVLFLILVLIGLVLGVFIRYLYARQLKKAAEQKAERILANAYKKAKDLKEQNQ   63 (485)
T ss_pred             CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             960146999999999999999999999999999999888999999999999999999999999


No 62 
>PRK06328 type III secretion system protein; Validated
Probab=96.53  E-value=0.068  Score=31.62  Aligned_cols=101  Identities=11%  Similarity=0.072  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL  153 (176)
Q Consensus        74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl  153 (176)
                      ......+..+..|+.++..++.++..+.+...++...+--++--..-..-...+..+.......+++...+++..+++|+
T Consensus        26 ~~~~~A~eilE~Ak~~Ae~~~~ea~~e~e~~~eea~~~G~~eG~~~~~~~la~~~~e~~~~~~~~e~~lv~lvl~aarKI  105 (223)
T PRK06328         26 SALLDAKELLEKTKEDSEAYTQETHEECAELREEAKNQGFKEGSEAWSKQLAFLEKETQALRIQVKEALVPLAIASVKKI  105 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99874999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             -HHH--CCHHHHHHHHHHHHHHHH
Q ss_conf             -841--599999999999994210
Q gi|254781086|r  154 -GFS--VSDADVQKILDRKRDGID  174 (176)
Q Consensus       154 -~~~--~~~~~~~~~i~~~~~~i~  174 (176)
                       +..  .+...+-.+|...++.+.
T Consensus       106 Ig~el~~~pe~vl~iVr~aL~~vr  129 (223)
T PRK06328        106 IGKELELHPETIVSIISEALKELT  129 (223)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             888876088999999999999986


No 63 
>KOG3976 consensus
Probab=96.52  E-value=0.069  Score=31.55  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999955408999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   28 LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN  104 (176)
Q Consensus        28 ~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~  104 (176)
                      ..++|++|+++..+.+.|.|.+..|++.++|.+.+++++...-++-...-+.++..........-+.+-.++...-.
T Consensus       100 ~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~  176 (247)
T KOG3976         100 STLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQ  176 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             03369999999999855999988677799999999998886799999876456665778888776456566679888


No 64 
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=96.45  E-value=0.076  Score=31.30  Aligned_cols=51  Identities=20%  Similarity=0.062  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999
Q gi|254781086|r   81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ  131 (176)
Q Consensus        81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k  131 (176)
                      +.+.+|+.++..|+.+|+.+++.+..++..+++...+.....++.+....+
T Consensus        10 ~I~~eA~~~a~~Il~eA~~eae~I~~~a~~~a~~~~~~~~~k~~~ea~~~~   60 (198)
T PRK03963         10 EINREAEQKIEYILSEARKEAEKIKEEARRRAEARAEWILRRAKTQAELEK   60 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999999999999


No 65 
>TIGR02926 AhaH ATP synthase archaeal, H subunit; InterPro: IPR014275   A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species.  This entry represents subunit H of the archaeal A-ATPase; it is unclear precisely where subunit H fits into the complex.   More information about this protein can be found at Protein of the Month: ATP Synthases ..
Probab=96.39  E-value=0.083  Score=31.07  Aligned_cols=76  Identities=20%  Similarity=0.159  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   72 VESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTK  147 (176)
Q Consensus        72 ae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~  147 (176)
                      ..++-......+.+|+.++..++.+|+.++..+++.+..+|.+..+.++..++.++..++...+.+=.+.+.++..
T Consensus         4 IK~AE~~A~~~i~eA~~~~~~~i~eAr~eA~~l~e~Ae~eA~~~~~e~i~~a~~~i~~E~~~I~~~~eke~e~~~~   79 (85)
T TIGR02926         4 IKKAEEEAEELIEEAKEEREQRIAEAREEAKELLEEAEEEAKKLKEEIIEEAEEEIEKEAEKILEEGEKEIEELKS   79 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8998999999989899999866899989988888998898899998888999999998799988665563999999


No 66 
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.36  E-value=0.086  Score=30.98  Aligned_cols=121  Identities=14%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             CCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6899885988768899--999999999999999995540-8----99999999999999999999999999999999999
Q gi|254781086|r   10 SSRFPPFDTSTFLSQF--FWLAIIFGIFYWVTHRFILPR-L----SSIMEVRRNLISSDQEKMDSAKREVESMISSYEES   82 (176)
Q Consensus        10 ~~gmpqld~~~f~~q~--fw~~I~F~il~~il~~~~~~p-i----~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~   82 (176)
                      -+.| .||+.+.-|.+  .|.+..=---+-+-.++.+|+ |    ...+......+..-+...+..+.+.++...+.+..
T Consensus       462 nas~-~FD~~tl~PtYrl~~G~pG~S~A~~IA~rlGlp~~ii~~A~~~l~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~  540 (780)
T PRK00409        462 NASV-EFDEETLRPTYRLLIGIPGRSNAFEIAKRLGLPPNIIEEAKKVYGEDKEKLNELIASLEELERELEEKAEEAEKL  540 (780)
T ss_pred             EEEE-EECCCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9888-874023786068705999763699999992979999999998856316589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999
Q gi|254781086|r   83 LAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQK  132 (176)
Q Consensus        83 l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~  132 (176)
                      ..+++....+. ++..++.++...+...++..+++..+.++++++...-+
T Consensus       541 ~~e~~~~~~~l-~~~~~~l~~~~~~~~~~~~~ea~~~i~~a~~e~~~~i~  589 (780)
T PRK00409        541 LKEAEKLKEEL-EEQKEKLQEREDKLLLEAEEEAQQAIKEAKKEAAEIIK  589 (780)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999-99999999999999999999999999999999999999


No 67 
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=96.27  E-value=0.096  Score=30.69  Aligned_cols=73  Identities=21%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVT  146 (176)
Q Consensus        74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a  146 (176)
                      +........+.+|+.++.+++.+|+.++..++.+...++....+..+..+++++...+...+.+-...+.++.
T Consensus        14 ~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~   86 (108)
T COG2811          14 KAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAIL   86 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9886589999999988998999999889999999999999999999998898889999999988897799998


No 68 
>pfam03179 V-ATPase_G Vacuolar (H+)-ATPase G subunit. This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialized cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.
Probab=96.20  E-value=0.1  Score=30.45  Aligned_cols=54  Identities=20%  Similarity=0.275  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKAS  135 (176)
Q Consensus        82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~  135 (176)
                      .|..|..+|..|+++|+..-...+.+++.+|..+++....+-+.+.........
T Consensus         8 qLL~AEk~A~~iV~~AR~~k~~rLKqAK~EA~~EI~~yR~~kE~ef~~~e~~~~   61 (105)
T pfam03179         8 QLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHS   61 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999878889999999999999999999999999863


No 69 
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=95.98  E-value=0.13  Score=29.80  Aligned_cols=80  Identities=26%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999----9999999999999999999999999-999999999
Q gi|254781086|r   68 AKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQ----REVFEKDLLHKLSNAQNEIDDMQKK-ASQEVYSIV  142 (176)
Q Consensus        68 ~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~----~~~a~~ei~~~~~~a~~~I~~~k~~-a~~ei~~~a  142 (176)
                      +.+..+.+..+.+..+.+|+.++..++.++..++.+..++.    +.++..+...++.++++++...... ....+.+.+
T Consensus        19 ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ka~~~k~~~~a   98 (108)
T COG2811          19 ADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAAEGKVVEAA   98 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999988998999999889999999999999999999998898889999999988897799998886765789999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781086|r  143 GEVTK  147 (176)
Q Consensus       143 ~~~a~  147 (176)
                      .+...
T Consensus        99 ~~~~~  103 (108)
T COG2811          99 LSEFL  103 (108)
T ss_pred             HHHHH
T ss_conf             99999


No 70 
>pfam01991 vATP-synt_E ATP synthase (E/31 kDa) subunit. This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit.
Probab=95.72  E-value=0.17  Score=29.12  Aligned_cols=40  Identities=28%  Similarity=0.079  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999
Q gi|254781086|r   78 SYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLL  117 (176)
Q Consensus        78 ~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~  117 (176)
                      +.++.+.+|+.++..++.++..++...+.....++.++++
T Consensus         9 ka~eI~~~A~~e~~~~k~~~~~~~~~~~~~~~~k~~k~~~   48 (195)
T pfam01991         9 KAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE   48 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999


No 71 
>TIGR02926 AhaH ATP synthase archaeal, H subunit; InterPro: IPR014275   A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species.  This entry represents subunit H of the archaeal A-ATPase; it is unclear precisely where subunit H fits into the complex.   More information about this protein can be found at Protein of the Month: ATP Synthases ..
Probab=95.70  E-value=0.17  Score=29.10  Aligned_cols=69  Identities=28%  Similarity=0.344  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999----999999999999999999999999999
Q gi|254781086|r   68 AKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQR----EVFEKDLLHKLSNAQNEIDDMQKKASQ  136 (176)
Q Consensus        68 ~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~----~~a~~ei~~~~~~a~~~I~~~k~~a~~  136 (176)
                      +......+....+..+.+||.++..|+.++..++.+..++..    .++..+...++...+++|..+...+..
T Consensus        11 A~~~i~eA~~~~~~~i~eAr~eA~~l~e~Ae~eA~~~~~e~i~~a~~~i~~E~~~I~~~~eke~e~~~~~A~~   83 (85)
T TIGR02926        11 AEELIEEAKEEREQRIAEAREEAKELLEEAEEEAKKLKEEIIEEAEEEIEKEAEKILEEGEKEIEELKSKAKE   83 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999898999998668999899888889988988999988889999999987999886655639999996043


No 72 
>TIGR01147 V_ATP_synt_G V-type ATPase, G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation..
Probab=95.30  E-value=0.24  Score=28.23  Aligned_cols=91  Identities=11%  Similarity=0.139  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCC
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999999--84159
Q gi|254781086|r   81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL--GFSVS  158 (176)
Q Consensus        81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl--~~~~~  158 (176)
                      ..|..|..+|.+++++||..-..-+..++.+|..||+.-..+-+++...--.....-.......+-...-.+|  .....
T Consensus        10 q~LL~AEKrAaekVseARkrk~~RlKqAK~EA~~EvE~Yk~QrE~EFK~FEa~~~G~~~~~~~k~~a~t~~~i~e~k~~~   89 (114)
T TIGR01147        10 QQLLQAEKRAAEKVSEARKRKQKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGKGELEEKIEAETEAKIAEIKKIV   89 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999998988999998878878889999998999888788998899998638847899998585899999999998


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999994
Q gi|254781086|r  159 DADVQKILDRKRD  171 (176)
Q Consensus       159 ~~~~~~~i~~~~~  171 (176)
                      ....+.+|+..|.
T Consensus        90 ~~~k~~Vik~LL~  102 (114)
T TIGR01147        90 QKNKDAVIKDLLE  102 (114)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             6007899999986


No 73 
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=95.10  E-value=0.28  Score=27.85  Aligned_cols=66  Identities=21%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999----9999999999999999999999999999999999999999999999999
Q gi|254781086|r   75 MISSYEESLAIARAHAK----EIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYS  140 (176)
Q Consensus        75 ~~~~~e~~l~eak~ea~----~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~  140 (176)
                      +..+....+.+|+.++.    .++..|..+++..++.++.+-+.++.+++...+.+|...+..+..+...
T Consensus        25 Ak~eAK~Ii~kAkeEAk~iEeeii~kAeeea~~lIE~kk~EGE~EAkKi~eeGe~EieelK~ra~~nfE~   94 (106)
T PRK08404         25 AKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKLEGEEEAKKILEEGEAEISELKARAEEKFET   94 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8888999999989999987999999999999999999887027889999998186899999888876999


No 74 
>PRK06937 type III secretion system protein; Reviewed
Probab=95.05  E-value=0.28  Score=27.77  Aligned_cols=100  Identities=18%  Similarity=0.087  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q gi|254781086|r   76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF  155 (176)
Q Consensus        76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~  155 (176)
                      .-+....+..|+.++..|+.+++...+...+.-..+-..+......+...............++.....++...++||.+
T Consensus        29 ~~~A~~ile~A~~~A~~i~~~A~~~~e~~~~~Gy~eG~~ea~~e~ae~i~~~~~~~~~~~~~le~~l~~lv~~av~kIlg  108 (204)
T PRK06937         29 LLSAEELVEAARQRAAEIEAEAREVYEQQKQLGYEAGLDEARTEQAELILETVLQCQEFYRGIEQQMSEVVLEAVRKILN  108 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             84399999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             HCCHH-HHHHHHHHHHHHHHC
Q ss_conf             15999-999999999942106
Q gi|254781086|r  156 SVSDA-DVQKILDRKRDGIDA  175 (176)
Q Consensus       156 ~~~~~-~~~~~i~~~~~~i~~  175 (176)
                      ..++. ..-.+|...+..+..
T Consensus       109 ~~d~~el~~~~v~~al~~v~~  129 (204)
T PRK06937        109 DYDDVERTLQVVREALALVSN  129 (204)
T ss_pred             CCCHHHHHHHHHHHHHHHHHC
T ss_conf             468389999999999999735


No 75 
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=94.97  E-value=0.3  Score=27.63  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             99999999999999999999999999999999999999999999999999999-9999999999999999999999999-
Q gi|254781086|r   76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID-DMQKKASQEVYSIVGEVTKDLVRKL-  153 (176)
Q Consensus        76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~-~~k~~a~~ei~~~a~~~a~~i~~kl-  153 (176)
                      ..+.+....+|+.++..+.++++..++...+......+.+++...+....... ..+...+....+....+-..+.++| 
T Consensus        16 ~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~~~~~~~e~L~   95 (194)
T COG1390          16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILESVFEAVEEKLR   95 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999989999999999999999999999999899999999999998999999999999999999999999997


Q ss_pred             --HHHCCHHHHHHHHHHHHHH
Q ss_conf             --8415999999999999942
Q gi|254781086|r  154 --GFSVSDADVQKILDRKRDG  172 (176)
Q Consensus       154 --~~~~~~~~~~~~i~~~~~~  172 (176)
                        ..+..-...++++...+..
T Consensus        96 ~i~~~~~~~~l~~ll~~~~~~  116 (194)
T COG1390          96 NIASDPEYESLQELLIEALEK  116 (194)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             276773167899999999986


No 76 
>KOG1772 consensus
Probab=94.66  E-value=0.36  Score=27.13  Aligned_cols=48  Identities=21%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999
Q gi|254781086|r   82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD  129 (176)
Q Consensus        82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~  129 (176)
                      .|..|..+|.+++++|+..-..-...++.+|..+++.-..+-+++...
T Consensus        10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~   57 (108)
T KOG1772          10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKE   57 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999989888887889999999999987899999


No 77 
>pfam00895 ATP-synt_8 ATP synthase protein 8.
Probab=94.23  E-value=0.049  Score=32.50  Aligned_cols=20  Identities=15%  Similarity=0.358  Sum_probs=13.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q ss_conf             98859887688999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIF   32 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F   32 (176)
                      ||||||+.|+.-++-..+.|
T Consensus         1 MPQLnp~pWf~i~~~~wl~l   20 (55)
T pfam00895         1 MPQLNPSPWFLIFLSSWLTL   20 (55)
T ss_pred             CCCCCCCCHHHHHHHHHHHH
T ss_conf             99888822899999999999


No 78 
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=94.17  E-value=0.46  Score=26.46  Aligned_cols=67  Identities=22%  Similarity=0.111  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   75 MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI  141 (176)
Q Consensus        75 ~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~  141 (176)
                      +....+.++..|+.++..|+..|+.++..+-++...+++.+....+.+...+=+.+-++.+.+=...
T Consensus        14 AEk~AeeRIE~Ak~eAK~Ii~kAkeEAk~iEeeii~kAeeea~~lIE~kk~EGE~EAkKi~eeGe~E   80 (106)
T PRK08404         14 AERLAEERIERAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKLEGEEEAKKILEEGEAE   80 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             8887999999888889999999899999879999999999999999998870278899999981868


No 79 
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=94.11  E-value=0.48  Score=26.39  Aligned_cols=98  Identities=8%  Similarity=0.032  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999-999999999999998
Q gi|254781086|r   76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY-SIVGEVTKDLVRKLG  154 (176)
Q Consensus        76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~-~~a~~~a~~i~~kl~  154 (176)
                      ..+....+.+|+.++.++++++...+..+......+++.+++++.++.......+.+......+ +...++-..+.+.+.
T Consensus        15 e~k~k~I~~ea~~ea~~i~~ea~~k~~~i~~~~~~rae~e~~~i~~~ii~sA~le~kk~~l~a~~e~ld~~~~~~~e~i~   94 (185)
T PRK01194         15 EEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEHLM   94 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999999999899999999999999888999999999998750788999999999999999999999986


Q ss_pred             H---HCC-HHHHHHHHHHHHHHH
Q ss_conf             4---159-999999999999421
Q gi|254781086|r  155 F---SVS-DADVQKILDRKRDGI  173 (176)
Q Consensus       155 ~---~~~-~~~~~~~i~~~~~~i  173 (176)
                      .   ... ++...++|+.+.+.+
T Consensus        95 ~~~~~k~Y~~lL~kLi~~A~k~l  117 (185)
T PRK01194         95 NITKSKEYDSILNKMIEVAIKTL  117 (185)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             68777558999999999999860


No 80 
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=93.82  E-value=0.32  Score=27.47  Aligned_cols=83  Identities=20%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL  120 (176)
Q Consensus        41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~  120 (176)
                      +..+||++.  +.|++.+..--..+++++........++.+.+...+.. ..+-++-....++.+++.......+++...
T Consensus        99 ri~iP~lT~--E~R~elvK~~k~~~E~aKv~iRniR~~~~~~iKk~~k~-~~iseD~~k~~~~~iqkltd~~~~~id~~~  175 (185)
T PRK00083         99 RLPIPPLTE--ERRKELVKVAKKEAEEAKVAIRNIRRDANDKLKKLEKD-KEISEDEERRAEDEIQKLTDKYIKKIDELL  175 (185)
T ss_pred             EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             875898889--99999999999999999999999999999999876504-788778898899999999999999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254781086|r  121 SNAQNE  126 (176)
Q Consensus       121 ~~a~~~  126 (176)
                      ...+++
T Consensus       176 ~~Keke  181 (185)
T PRK00083        176 AEKEKE  181 (185)
T ss_pred             HHHHHH
T ss_conf             999998


No 81 
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another round of protein synthesis.  RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear.  RRF is essential for bacterial growth.  It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=93.20  E-value=0.49  Score=26.31  Aligned_cols=83  Identities=23%  Similarity=0.345  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL  120 (176)
Q Consensus        41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~  120 (176)
                      +..+||++.  +.|++.+..--..++..+........++.+.+..... ...+-++-...+++.++........+++...
T Consensus        95 ri~iP~lT~--E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~ikk~~k-~~~iseD~~k~~~~~iqkltd~~~~~id~~~  171 (179)
T cd00520          95 RVNLPPLTE--ERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEK-EKEISEDEVKKAEEDLQKLTDEYIKKIDELL  171 (179)
T ss_pred             EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             736998999--9999999999999999999999999999999987663-3899876888999999999999999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254781086|r  121 SNAQNE  126 (176)
Q Consensus       121 ~~a~~~  126 (176)
                      ...+++
T Consensus       172 ~~Keke  177 (179)
T cd00520         172 KSKEKE  177 (179)
T ss_pred             HHHHHH
T ss_conf             999885


No 82 
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=92.98  E-value=0.74  Score=25.22  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE  137 (176)
Q Consensus        82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~e  137 (176)
                      ...+++.++..|.++|..++..+.++....++.-++.....++++....+...++.
T Consensus        11 I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~   66 (194)
T COG1390          11 ILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISS   66 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999899999999999999999999999998999999999999


No 83 
>MTH00102 ATP8 ATP synthase F0 subunit 8; Validated
Probab=92.76  E-value=0.1  Score=30.52  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=16.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             98859887688999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIF   35 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il   35 (176)
                      |||||.++|+.-+.-.++.+.++
T Consensus         1 MPQLDTStWf~tI~smi~tLFi~   23 (67)
T MTH00102          1 MPQLDTSTWFITILSMLLTLFII   23 (67)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             98653303899999999999999


No 84 
>KOG0718 consensus
Probab=92.55  E-value=0.84  Score=24.85  Aligned_cols=39  Identities=15%  Similarity=0.166  Sum_probs=28.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             598876889999999999999999999554089999999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR   54 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R   54 (176)
                      |+-.+-++-+||-+|.=++.||.+.+|++.|...-.++|
T Consensus       368 l~d~~~p~avfya~v~P~~s~F~l~k~v~rP~~~~~k~~  406 (546)
T KOG0718         368 LCDELLPSAVFYALVFPITSYFGLKKFVLRPYLLKRKKR  406 (546)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHH
T ss_conf             610121365563116778899988887106998865768


No 85 
>PRK09098 type III secretion system protein HrpB; Validated
Probab=92.08  E-value=0.96  Score=24.50  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999--------9999999---999999999999999
Q gi|254781086|r   72 VESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLH--------KLSNAQN---EIDDMQKKASQEVYS  140 (176)
Q Consensus        72 ae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~--------~~~~a~~---~I~~~k~~a~~ei~~  140 (176)
                      ......+....|..|+.++..|+++|+.+++.+..+.+.+++.-.+.        -+.++..   +....+.++...+++
T Consensus        34 ~~~~~~~~~~~L~~Ar~eA~~Il~~Ar~~A~~I~~~Ar~e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~~~~~m~~  113 (229)
T PRK09098         34 LAAVHAERDAVLAAARDRAERIAAEARAQAEALLEDARREADRSARLGYAAGLRQALAEWHARGADHAFAERRAARRMRE  113 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999989999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCHH-HHHHHHHH
Q ss_conf             99999999999998415999-99999999
Q gi|254781086|r  141 IVGEVTKDLVRKLGFSVSDA-DVQKILDR  168 (176)
Q Consensus       141 ~a~~~a~~i~~kl~~~~~~~-~~~~~i~~  168 (176)
                      ...++....++|+....+.. .+..++..
T Consensus       114 rLa~iV~~AVekIv~~e~~~aL~~ra~~~  142 (229)
T PRK09098        114 RLAEIVAAAVEQIVHGEDPAALFARAAQT  142 (229)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999999999999713988899999999


No 86 
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=91.98  E-value=0.99  Score=24.42  Aligned_cols=107  Identities=11%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999-999999999999999999999999999---9999999999999
Q gi|254781086|r   69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN-LEFQREVFEKDLLHKLSNAQNEIDDMQ---KKASQEVYSIVGE  144 (176)
Q Consensus        69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~-~e~~~~~a~~ei~~~~~~a~~~I~~~k---~~a~~ei~~~a~~  144 (176)
                      .++......+.+..+.++..+...++++++.++... ++.-..++..+....+.++..-+....   ............+
T Consensus        83 ~dels~~~~klq~~ie~~e~e~~~~le~a~~eG~eeG~e~G~~ea~~e~~~~i~~~~~ile~~~~~~~~~l~~~E~elv~  162 (268)
T PRK06669         83 EDELSSSRIKLEMQIEEAEEERKRLLEEAKAEGYEEGYEEGFEKAREEFQKLIDELKAILEEAIDEREEILESSEEEIVE  162 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47753508999999999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHH-H--HCCHHHHHHHHHHHHHHHHC
Q ss_conf             9999999998-4--15999999999999942106
Q gi|254781086|r  145 VTKDLVRKLG-F--SVSDADVQKILDRKRDGIDA  175 (176)
Q Consensus       145 ~a~~i~~kl~-~--~~~~~~~~~~i~~~~~~i~~  175 (176)
                      ++..+++++. .  +.+...+-.+|...++.+..
T Consensus       163 lal~IAkkVI~~~~~~~~~i~~~lvk~~l~evk~  196 (268)
T PRK06669        163 LALDIAKKVIKEISENSKEVALALVKELLKEVKD  196 (268)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999705899999999999997313


No 87 
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family; InterPro: IPR012842    This entry is related to IPR009335 from INTERPRO, but is broader. IPR009335 from INTERPRO describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This entry also includes the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This entry excludes the related protein FliH of the bacterial flagellar apparatus (see IPR000563 from INTERPRO)..
Probab=91.17  E-value=1.2  Score=23.90  Aligned_cols=97  Identities=12%  Similarity=0.132  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999--99999999999999999999999999999999999999999999998
Q gi|254781086|r   77 SSYEESLAIARAHAKEIIDKVVAAAEQNLEF--QREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLG  154 (176)
Q Consensus        77 ~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~--~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~  154 (176)
                      ...+..|.+|+..+..|+.++..+++.....  ...+...+....-..--..-..........|.+.+..+....+++|.
T Consensus        17 ~~A~~il~~A~~~A~~~~~~A~e~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~l   96 (183)
T TIGR02499        17 ARAQAILAAARQRAEAILADAEEEAEASRQLLKGYEQGLEQFWQEAAAQLVEWQQEAEQLEASLEERLAELVLQALEQIL   96 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             84999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHC----CHH-HHHHHHHHHHHHH
Q ss_conf             415----999-9999999999421
Q gi|254781086|r  155 FSV----SDA-DVQKILDRKRDGI  173 (176)
Q Consensus       155 ~~~----~~~-~~~~~i~~~~~~i  173 (176)
                      ++.    ++. ....+|...+..+
T Consensus        97 ~~~~~qQ~~~~~~~~~lr~~~~~~  120 (183)
T TIGR02499        97 GETLGQQDESERLVRLLRQLLAAV  120 (183)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             563358998899999999999987


No 88 
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=91.10  E-value=1.2  Score=23.85  Aligned_cols=84  Identities=24%  Similarity=0.350  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL  120 (176)
Q Consensus        41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~  120 (176)
                      ++.+||+..  +.|++.+..--..++..+-.......+....+...... ..+-++....++..++......-.+++...
T Consensus       101 Rv~~P~lTe--ErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~-~~isEDe~k~~e~~iQKlTd~yi~~iD~~~  177 (187)
T COG0233         101 RVPLPPLTE--ERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKD-KEISEDEVKKAEEEIQKLTDEYIKKIDELL  177 (187)
T ss_pred             EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             754999887--99999999999988999999999999999999987525-876567888899999999999999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781086|r  121 SNAQNEI  127 (176)
Q Consensus       121 ~~a~~~I  127 (176)
                      ...+++|
T Consensus       178 ~~KEkEi  184 (187)
T COG0233         178 KDKEKEI  184 (187)
T ss_pred             HHHHHHH
T ss_conf             9999887


No 89 
>pfam06936 Selenoprotein_S Selenoprotein S (SelS). This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. The function of this family is unknown.
Probab=91.05  E-value=1.2  Score=23.82  Aligned_cols=28  Identities=18%  Similarity=0.369  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7688999999999999999999955408
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      .|++..-|.+++++|++++|+--+.|.+
T Consensus        31 ~~l~~YGWyiL~~~v~ly~l~qkL~~~~   58 (190)
T pfam06936        31 ELLSKYGWYLLLGCVGIYLLIQKLRPRW   58 (190)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999637799999999999999871999


No 90 
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=90.94  E-value=0.47  Score=26.39  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             688999999999999999999955408999999999999
Q gi|254781086|r   21 FLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLIS   59 (176)
Q Consensus        21 f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~   59 (176)
                      +++.++-+++.|++|||+++|    |=.+-+.+|++.+.
T Consensus         8 ~~~~ll~~vl~~~ifyFli~R----PQrKr~K~~~~ml~   42 (97)
T COG1862           8 GLVLLLPLVLIFAIFYFLIIR----PQRKRMKEHQELLN   42 (97)
T ss_pred             CHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHH
T ss_conf             077999999999999986167----88999999999997


No 91 
>MTH00036 ATP8 ATP synthase F0 subunit 8; Validated
Probab=89.94  E-value=0.39  Score=26.95  Aligned_cols=13  Identities=31%  Similarity=0.616  Sum_probs=10.2

Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             9885988768899
Q gi|254781086|r   13 FPPFDTSTFLSQF   25 (176)
Q Consensus        13 mpqld~~~f~~q~   25 (176)
                      |||||+..|+-.+
T Consensus         1 MPQLdf~~W~~NF   13 (53)
T MTH00036          1 MPQLDFTWWLFNF   13 (53)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9853207999999


No 92 
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132   Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=89.88  E-value=0.47  Score=26.42  Aligned_cols=37  Identities=16%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7688999999999999999999955408999999999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRN   56 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~   56 (176)
                      ||.|+++|++|.=+++|+++|-++-|+|.+=.++.-+
T Consensus       282 ~YSp~LT~vV~~SL~~Y~~~s~~v~p~LRkRVe~kfe  318 (703)
T TIGR01846       282 FYSPTLTGVVIGSLVCYALLSVFVSPILRKRVEDKFE  318 (703)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6401688789999999999999850011023577641


No 93 
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302   This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=89.60  E-value=1.6  Score=23.06  Aligned_cols=95  Identities=9%  Similarity=0.094  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf             999999999999999999554089999999999999999--------------999999999999999--9999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQE--------------KMDSAKREVESMISS--YEESLAIARA   88 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~--------------~A~~~~~eae~~~~~--~e~~l~eak~   88 (176)
                      +.-.++.|++++||+|||+|..|..=|++..+-|.+=..              +-...-+-.+-.+..  ...+|..-..
T Consensus       374 ~~~g~L~L~~~~~i~WrvVYrsv~~rL~q~t~Al~rla~Gdldi~lPd~~GddEL~~m~~ai~~fR~~a~~~~~L~~~~~  453 (1052)
T TIGR02956       374 LILGLLGLVILVFIMWRVVYRSVILRLNQHTQALLRLAEGDLDISLPDAKGDDELAHMGRAIEVFRDTAAKKLKLEAEER  453 (1052)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999877766055567899999973668764578888844899999999999999999866769999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999
Q gi|254781086|r   89 HAKEIIDKVVAAAEQNLEFQREVFEKDLLHK  119 (176)
Q Consensus        89 ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~  119 (176)
                      ...+-+.+.|+..+..+.....+++.-=++.
T Consensus       454 ~~~~EL~~HKe~LE~~v~~RT~EL~~~N~rL  484 (1052)
T TIGR02956       454 QVKQELQEHKESLEQLVAQRTQELKETNERL  484 (1052)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998889999999999889999974676


No 94 
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.17  E-value=1.8  Score=22.87  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999995540899999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDS   67 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~   67 (176)
                      ++.+++.|++.|++.+++.-..+...-..-+.-+.+.-.+|+.
T Consensus         5 ii~lviG~~iGy~l~k~~~~~~i~~A~~~A~~Ii~~A~~eAe~   47 (514)
T TIGR03319         5 LVALIVGLIIGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAET   47 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999


No 95 
>TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849   This entry describes proteins of unknown function..
Probab=88.73  E-value=0.53  Score=26.10  Aligned_cols=22  Identities=41%  Similarity=0.717  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6889999999999999999999
Q gi|254781086|r   21 FLSQFFWLAIIFGIFYWVTHRF   42 (176)
Q Consensus        21 f~~q~fw~~I~F~il~~il~~~   42 (176)
                      +..+++-+++.|++|||+++|.
T Consensus         2 ~l~~l~~lv~~~~~FYFl~~RP   23 (86)
T TIGR00739         2 FLTTLLPLVLIFLIFYFLIIRP   23 (86)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCH
T ss_conf             5215899999999999970497


No 96 
>pfam06188 HrpE HrpE protein. This family consists of several bacterial HrpE proteins. The exact function of this family is unknown but it is thought that HrpE is involved in the secretion of HrpZ (harpinPss).
Probab=88.41  E-value=2  Score=22.55  Aligned_cols=95  Identities=17%  Similarity=0.120  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q gi|254781086|r   76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF  155 (176)
Q Consensus        76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~  155 (176)
                      .......+.+|+..+..|+..+.++++...+...++++.+.=+.-...-.....+|......+-..+..+....+.++.+
T Consensus        29 ~~~A~~il~~Ar~QA~~il~~a~~~ae~~~~~~~eqA~a~FWqqA~a~L~~w~~qRe~~~~~l~~~~~~ll~qAL~~LLd  108 (191)
T pfam06188        29 SLLARTLLEDARQQAEQILDLAEEKAEALQQRAEEQAEAAFWQQANALLQEWQQQREQLEQQALSAADQLLNQALQQLLD  108 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99899999999999999999999999999998999999999999999999999999999999999999999999999864


Q ss_pred             HCCHH-HHHHHHHHHH
Q ss_conf             15999-9999999999
Q gi|254781086|r  156 SVSDA-DVQKILDRKR  170 (176)
Q Consensus       156 ~~~~~-~~~~~i~~~~  170 (176)
                      +.++. ....++-..+
T Consensus       109 e~~~~qR~~ALlRqLl  124 (191)
T pfam06188       109 ETPLPQRLQALLRQLL  124 (191)
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             6984899999999999


No 97 
>MTH00133 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=88.08  E-value=0.53  Score=26.08  Aligned_cols=10  Identities=10%  Similarity=0.670  Sum_probs=8.4

Q ss_pred             CCCCCHHHHH
Q ss_conf             9885988768
Q gi|254781086|r   13 FPPFDTSTFL   22 (176)
Q Consensus        13 mpqld~~~f~   22 (176)
                      ||||||+=|+
T Consensus         1 MPQLnP~PWf   10 (55)
T MTH00133          1 MPQLNPAPWF   10 (55)
T ss_pred             CCCCCCCHHH
T ss_conf             9988864099


No 98 
>pfam06103 DUF948 Bacterial protein of unknown function (DUF948). This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=87.68  E-value=2.2  Score=22.27  Aligned_cols=65  Identities=14%  Similarity=0.193  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999955408999999999999999999999999999999999999999999999
Q gi|254781086|r   27 WLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE   92 (176)
Q Consensus        27 w~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~   92 (176)
                      -.+|.|++|++++.+++. .+.+.|++=...|..--...+....+++.++.+.+.-+.+.+.+...
T Consensus         5 i~AiAf~vLvi~l~~~L~-~~~~tl~~~~~Ti~~l~~~vd~i~~et~~lL~ktN~L~~DVn~K~~~   69 (90)
T pfam06103         5 IIAIAFLVLVIFLIKTLK-SLSKTLDEVNKTLAGLTKQVDGITTETEDLLAKTNVLLEDVNGKVET   69 (90)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999-99999999999999999878989999999999888899999989997


No 99 
>MTH00171 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=87.54  E-value=0.55  Score=26.01  Aligned_cols=11  Identities=9%  Similarity=0.437  Sum_probs=9.1

Q ss_pred             CCCCCHHHHHH
Q ss_conf             98859887688
Q gi|254781086|r   13 FPPFDTSTFLS   23 (176)
Q Consensus        13 mpqld~~~f~~   23 (176)
                      ||||||+=|+.
T Consensus         1 MPQLNPaPWf~   11 (54)
T MTH00171          1 MPQLNPIPWFF   11 (54)
T ss_pred             CCCCCCHHHHH
T ss_conf             99888503999


No 100
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=87.31  E-value=1.4  Score=23.54  Aligned_cols=31  Identities=19%  Similarity=0.464  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999554089999999999
Q gi|254781086|r   23 SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNL   57 (176)
Q Consensus        23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~   57 (176)
                      ++++++++.|++|||++.+    |=.+-..++++.
T Consensus        20 ~~ll~~ili~~vfYfl~iR----PQ~Kr~ke~~~m   50 (107)
T PRK05585         20 TSLLPLVVFFAIFYFLIIR----PQQKRQKEHKKM   50 (107)
T ss_pred             HHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHH
T ss_conf             9999999999999987426----488999999999


No 101
>MTH00123 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=86.75  E-value=0.57  Score=25.90  Aligned_cols=13  Identities=8%  Similarity=0.460  Sum_probs=10.3

Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             9885988768899
Q gi|254781086|r   13 FPPFDTSTFLSQF   25 (176)
Q Consensus        13 mpqld~~~f~~q~   25 (176)
                      ||||||..|+.-+
T Consensus         1 MPQLNp~pWf~i~   13 (55)
T MTH00123          1 MPQLNPNPWFLIL   13 (55)
T ss_pred             CCCCCCCCHHHHH
T ss_conf             9988883589999


No 102
>MTH00122 consensus
Probab=86.70  E-value=0.54  Score=26.03  Aligned_cols=10  Identities=10%  Similarity=0.663  Sum_probs=8.2

Q ss_pred             CCCCCHHHHH
Q ss_conf             9885988768
Q gi|254781086|r   13 FPPFDTSTFL   22 (176)
Q Consensus        13 mpqld~~~f~   22 (176)
                      ||||||+=|+
T Consensus         1 MPQLNP~PWF   10 (55)
T MTH00122          1 MPQLNPNPWF   10 (55)
T ss_pred             CCCCCCCCHH
T ss_conf             9888884589


No 103
>MTH00072 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=86.57  E-value=0.79  Score=25.02  Aligned_cols=10  Identities=10%  Similarity=0.647  Sum_probs=8.4

Q ss_pred             CCCCCHHHHH
Q ss_conf             9885988768
Q gi|254781086|r   13 FPPFDTSTFL   22 (176)
Q Consensus        13 mpqld~~~f~   22 (176)
                      ||||||+=|+
T Consensus         1 MPQLNP~PWF   10 (55)
T MTH00072          1 MPQLNPGPWF   10 (55)
T ss_pred             CCCCCCHHHH
T ss_conf             9888861899


No 104
>pfam01765 RRF Ribosome recycling factor. The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Probab=85.91  E-value=2.8  Score=21.67  Aligned_cols=83  Identities=22%  Similarity=0.340  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL  120 (176)
Q Consensus        41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~  120 (176)
                      +..+||++.  +.|++.+..--..+++++........++.+.+...+.. ..+-++-....++.+++........++...
T Consensus        81 rv~iP~lT~--E~R~~lvK~~k~~~E~aKv~iR~iR~~~~~~iKk~~~~-~~iseD~~k~~~~~iq~ltd~~~~~id~~~  157 (165)
T pfam01765        81 RIPIPPLTE--ERRKELVKQAKKLAEEAKVAIRNIRRDANDKLKKLEKD-KEISEDEVKKAEKEIQKLTDKYIKKIDELL  157 (165)
T ss_pred             EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             985898889--99999999999999999999999999999999876504-999877888999999999999999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254781086|r  121 SNAQNE  126 (176)
Q Consensus       121 ~~a~~~  126 (176)
                      ...+++
T Consensus       158 ~~Keke  163 (165)
T pfam01765       158 KKKEKE  163 (165)
T ss_pred             HHHHHH
T ss_conf             999986


No 105
>pfam05103 DivIVA DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.
Probab=83.85  E-value=3.4  Score=21.10  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD  129 (176)
Q Consensus        56 ~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~  129 (176)
                      ......+...+..-.+...........|..|..-+..++..|+.+++.++.    +|+.+++.++.+|..+...
T Consensus        42 ~~L~~~~~~l~~~l~~~~~~e~~l~~~L~~Aq~~a~~~~~~A~~eA~~ii~----eA~~~A~~iv~eA~~~~~~  111 (131)
T pfam05103        42 EELKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKEAELIIK----EAEAKAERIVNDANEEAKK  111 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999988889999999999999999999999999999999----9999999999999999999


No 106
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=83.62  E-value=3.5  Score=21.04  Aligned_cols=53  Identities=21%  Similarity=0.350  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999995540899999999999999999999999999999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAK   91 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~   91 (176)
                      +||+++.  ++.++..-|++.|+.+-   |..  +...       ...+.-.+-|..+|.|.+.+..
T Consensus         1 ~FWi~~~--~l~~~a~~~i~~Pl~r~---~~~--~~~~-------~r~~~n~~iyrdqL~ELe~d~~   53 (117)
T TIGR03142         1 LFWIVAA--LLTLVALLFLLLPLLRR---KRA--AATV-------DRDELNLAVYRDRLAELERDLA   53 (117)
T ss_pred             CHHHHHH--HHHHHHHHHHHHHHHCC---CCC--CCCC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9589999--99999999999999557---445--6751-------5588889999999999999998


No 107
>pfam04100 Vps53_N Vps53-like, N-terminal. Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.
Probab=83.22  E-value=3.6  Score=20.94  Aligned_cols=89  Identities=11%  Similarity=0.157  Sum_probs=50.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             988598876889999999999999999999554089999999999999999999999----9999999999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAK----REVESMISSYEESLAIARA   88 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~----~eae~~~~~~e~~l~eak~   88 (176)
                      ||.|||.-|++++|=---++.-         +|.+...+..+...+..++..+-+..    .++...+++....+.+.-.
T Consensus         1 ~pdfdpv~~iN~lFp~e~SL~~---------id~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~   71 (375)
T pfam04100         1 MPDFSALEYINQLFPTEQSLTN---------IDSLIQKIQEEIRRLDANIKTVVRGQANVGEKGKEALDEAQKAIEELFQ   71 (375)
T ss_pred             CCCCCHHHHHHHHCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999889999885999688861---------7999999999999987999999998860111168899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254781086|r   89 HAKEIIDKVVAAAEQNLEFQREV  111 (176)
Q Consensus        89 ea~~ii~~a~~~a~~~~e~~~~~  111 (176)
                      +..+|.+.| .+.+..+.++...
T Consensus        72 kI~~Ik~kA-~~sE~~V~eit~d   93 (375)
T pfam04100        72 KIKEIKSKA-ESTEEMVKEITRD   93 (375)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHH
T ss_conf             999999999-9899999999987


No 108
>KOG2302 consensus
Probab=82.08  E-value=4  Score=20.67  Aligned_cols=55  Identities=20%  Similarity=0.418  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999995540899-----99999999999999999999999999999999999999
Q gi|254781086|r   27 WLAIIFGIFYWVTHRFILPRLSS-----IMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIAR   87 (176)
Q Consensus        27 w~~I~F~il~~il~~~~~~pi~~-----~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak   87 (176)
                      |.++-|++||+|+..|++.-...     +.+-|+.      .++++++.--|+.+...++++.+|+
T Consensus      1360 wmllYfIsfllIvsffVlnmfVgvvvenfhKcrqh------qe~EeArRreEKrLrrlekkrR~Aq 1419 (1956)
T KOG2302        1360 WMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQH------QEAEEARRREEKRLRRLEKKRRAAQ 1419 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             78999999999999999999999999999999887------7889998889999999999887504


No 109
>pfam02699 YajC Preprotein translocase subunit. See.
Probab=81.74  E-value=2.4  Score=22.02  Aligned_cols=20  Identities=45%  Similarity=0.820  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             88999999999999999999
Q gi|254781086|r   22 LSQFFWLAIIFGIFYWVTHR   41 (176)
Q Consensus        22 ~~q~fw~~I~F~il~~il~~   41 (176)
                      +++++++++.|++|||++.+
T Consensus         3 ~~~ll~~v~i~~i~yf~~iR   22 (83)
T pfam02699         3 LSSLLPLVLIFAIFYFLLIR   22 (83)
T ss_pred             HHHHHHHHHHHHHHHHHEEC
T ss_conf             57899999999999874150


No 110
>pfam01972 SDH_sah Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.
Probab=80.12  E-value=4.7  Score=20.25  Aligned_cols=48  Identities=19%  Similarity=0.163  Sum_probs=23.6

Q ss_pred             CCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88598876889999-99999999999999955408999999999999999999999
Q gi|254781086|r   14 PPFDTSTFLSQFFW-LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSA   68 (176)
Q Consensus        14 pqld~~~f~~q~fw-~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~   68 (176)
                      |-+||-+++..+|| ++..|.++.=++.+       +.++.++..+-..++.-+..
T Consensus         2 ~~~d~~~~~~~l~~~l~fi~~~l~P~l~~-------~~l~~~R~~~i~~ie~kr~s   50 (286)
T pfam01972         2 IYGDPMSSLSSLFWFLLFFYLIIAPQMKM-------RQLIMARLRCIREIERKRGS   50 (286)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCC
T ss_conf             46451568999999999999999999999-------99999999999999997388


No 111
>TIGR00496 frr ribosome recycling factor; InterPro: IPR002661   The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth . Thus ribosomes are 'recycled' and ready for another round of protein synthesis.; GO: 0006412 translation.
Probab=80.02  E-value=1.4  Score=23.55  Aligned_cols=83  Identities=18%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL  120 (176)
Q Consensus        41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~  120 (176)
                      |+.+||++.  +.|++.|..-=..||+.+-..-....+....+.... +-.++-++....+...+++.....-+.++...
T Consensus        91 R~~~PplT~--ErRke~~K~aKk~~E~~kvavRNvRrDand~vKkle-Kd~eisED~~~~~~e~iQK~TD~yikkid~~~  167 (177)
T TIGR00496        91 RINFPPLTE--ERRKELVKVAKKIAEQAKVAVRNVRRDANDKVKKLE-KDKEISEDEERKLQEEIQKITDEYIKKIDEIL  167 (177)
T ss_pred             EECCCCCCH--HHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             025889874--667877888764321013355200264788999852-47888800456557787426488889999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254781086|r  121 SNAQNE  126 (176)
Q Consensus       121 ~~a~~~  126 (176)
                      .+-+++
T Consensus       168 ~~KE~e  173 (177)
T TIGR00496       168 KDKEKE  173 (177)
T ss_pred             HHHHHH
T ss_conf             988998


No 112
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.46  E-value=5.3  Score=19.93  Aligned_cols=64  Identities=11%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999999999999999984159999999999999421069
Q gi|254781086|r  112 FEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDAF  176 (176)
Q Consensus       112 a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i~~~~~~i~~~  176 (176)
                      ..+....++.++...++..+.....+|.+.+..++..++.+. ...+.+.+...|.+.+..+..|
T Consensus        93 ~~e~~~~li~~~~~~~~~~~~~~e~qLv~lvl~ia~~Vi~~~-~~~~~~~ll~~v~e~L~~~~~~  156 (234)
T COG1317          93 VLERLAKLIAEFQAELEALKEVVEKQLVQLVLEIARKVIGKE-LELDPEALLAAVREALEEVPLF  156 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999999999999999999999999998565-3128899999999999971166


No 113
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=78.21  E-value=5.4  Score=19.89  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID  128 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~  128 (176)
                      ++.|...+.+|+...++     ......+.+++.++..++........+..+..-.+-...++..+...++.+.
T Consensus       511 ~~ei~~m~~~a~~~~~~-----D~~~r~~~e~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~i~~~~~~l~~~~~  579 (621)
T PRK05183        511 DDEIARMLKDSMSNAEE-----DMKARALAEQQVEAERVLEALQAALAADGDLLSADERAAIDAAMAALRALAQ  579 (621)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999987998-----8986998998988999999999999955440999999999999999999872


No 114
>pfam10961 DUF2763 Protein of unknown function (DUF2763). This eukaryotic family of proteins has no known function.
Probab=77.52  E-value=2.3  Score=22.16  Aligned_cols=23  Identities=22%  Similarity=0.615  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             598876889999999999999999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWVT   39 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~il   39 (176)
                      ..+ .|++.+||-+++|+.+||--
T Consensus        16 Wrl-s~i~d~fwgi~~~I~~FF~T   38 (91)
T pfam10961        16 WRL-SIIVDFFWGIVNFISLFFRT   38 (91)
T ss_pred             CCH-HHHHHHHHHHHHHHHHHHHH
T ss_conf             025-89999999999999999999


No 115
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=77.48  E-value=3.6  Score=20.94  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9885988768899999999999999999995540
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPR   46 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~p   46 (176)
                      |||.-|=-|....+-+.+.|+++..+ .+|-+.|
T Consensus         1 MPQMaPm~W~~L~i~F~~~~iif~~m-nyF~~~p   33 (52)
T MTH00158          1 MPQMAPMNWLLLFIFFSITFIIFNSM-NYFSYSP   33 (52)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCC
T ss_conf             98643089999999999999999988-8876078


No 116
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=77.30  E-value=5.7  Score=19.73  Aligned_cols=47  Identities=11%  Similarity=0.096  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999999999999999999999999999999
Q gi|254781086|r   47 LSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEI   93 (176)
Q Consensus        47 i~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~i   93 (176)
                      -..-+..|-..+...+..+....++++..+..+++.+.+++.+....
T Consensus       599 ~e~~l~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~i~~~~~~i~~~  645 (1192)
T pfam12128       599 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEAKRAVTEA  645 (1192)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999999999999999999999999999999999999


No 117
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=76.68  E-value=5.4  Score=19.87  Aligned_cols=49  Identities=14%  Similarity=0.213  Sum_probs=23.1

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             453346899885988768899999999999999999995540899999999
Q gi|254781086|r    5 SSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR   55 (176)
Q Consensus         5 ~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~   55 (176)
                      ...++..|||....-+|...+.|++  +.++.|++-.+++.|+...+..|.
T Consensus       425 ~~~~e~~~~~~~~~~~~~~~~~~~~--~~l~~~lv~~~~~r~~i~~~~~~~  473 (545)
T COG1766         425 QEAEEGDGKPEWETQSFLDSLIPVA--LYLVVFLVLFIIVRPVIRPRRRRG  473 (545)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             3211134314442034687999999--999999999999999999875155


No 118
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=76.33  E-value=6.1  Score=19.56  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999
Q gi|254781086|r   84 AIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ  131 (176)
Q Consensus        84 ~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k  131 (176)
                      .+...+...+.++.+++.+.+..     +.+++..+..+++.+|..++
T Consensus       323 a~l~~q~~~~~~~~~~~~~~~~~-----~~~~~~~kr~~~~r~~~~~~  365 (422)
T PRK00247        323 AELHAQNVELTKERTEEINAEKA-----AKKEIANKRREAEREINRAK  365 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHH
T ss_conf             67887657888998999877522-----63121044430465643999


No 119
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=75.56  E-value=4.4  Score=20.40  Aligned_cols=40  Identities=8%  Similarity=0.198  Sum_probs=26.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33468998859887688999999999999999999955408
Q gi|254781086|r    7 SDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus         7 ~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      +.+.++| +.+..+.++.++-.+..|+++.|+++||...|.
T Consensus        14 e~~~~~~-~~~~~~~~gsL~~iL~lil~~~wl~kr~~~~~~   53 (137)
T COG3190          14 ELEPASA-ALELAQMFGSLILILALILFLAWLVKRLGRAPL   53 (137)
T ss_pred             CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             3346530-669999999999999999999999999841436


No 120
>COG3462 Predicted membrane protein [Function unknown]
Probab=74.49  E-value=5.5  Score=19.80  Aligned_cols=18  Identities=11%  Similarity=0.357  Sum_probs=10.9

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             598876889999999999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFG   33 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~   33 (176)
                      |-.-+++..+||.++..+
T Consensus        46 ~yGm~lImpI~~~vvli~   63 (117)
T COG3462          46 LYGMWLIMPIFWAVVLIF   63 (117)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             223499999999999999


No 121
>TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747   Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA.    MutS is a modular protein with a complex structure , and is composed of:    N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts.    Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts .    This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication.
Probab=73.23  E-value=7.3  Score=19.08  Aligned_cols=136  Identities=14%  Similarity=0.202  Sum_probs=88.9

Q ss_pred             CCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8598876889--9999999999999999995540-8----9999999999999999999999999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQ--FFWLAIIFGIFYWVTHRFILPR-L----SSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIAR   87 (176)
Q Consensus        15 qld~~~f~~q--~fw~~I~F~il~~il~~~~~~p-i----~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak   87 (176)
                      -||-++.-|.  +.|.++.=---|.+-.|+.+|. |    ...+-+-.+.|..-++.....+.+.++..+..++.+.+..
T Consensus       501 ~fD~Etl~PtY~ll~g~~G~S~AF~iA~r~G~P~~iie~AK~~~g~~~e~~n~~ie~L~~~~k~~~~~~~~~e~~lkE~E  580 (834)
T TIGR01069       501 LFDEETLSPTYKLLFGVPGRSYAFEIAQRLGIPSEIIEQAKEKYGEFKEEINELIEKLSEKEKELEEKKEELEKLLKELE  580 (834)
T ss_pred             HHCHHHCCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             62334227431220037871068899998479888999986742640568999998479999999999998999999989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999-99999999999999
Q gi|254781086|r   88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE-VYSIVGEVTKDLVR  151 (176)
Q Consensus        88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~e-i~~~a~~~a~~i~~  151 (176)
                      ...+++-... .+......+...++.++..+.+..+.++++..-.++... +.......+..+++
T Consensus       581 ~~~~e~~~~~-~~l~~~~~~~~~~~~~e~~e~l~~~~~E~e~~~~~~~~~k~~~~~~~~~~e~l~  644 (834)
T TIGR01069       581 KLKKELEQEI-EELKERERNLKKELEKEAQEALKALKKEVEEIIRELKEKKIEKAKEKKSIELLE  644 (834)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999999-999999877789999999999999999999999997415767888888899987


No 122
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=72.19  E-value=3.5  Score=21.00  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             97564533468998859887688999999999999
Q gi|254781086|r    1 MASSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIF   35 (176)
Q Consensus         1 ~~~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il   35 (176)
                      |..+...+..|.|+..|.+=++.=+|-++|+|.+-
T Consensus         3 ~~~~~~~~d~~~~~eINltPlIDVvfvLLIfFmvt   37 (141)
T PRK11267          3 MHLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVA   37 (141)
T ss_pred             EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             11578988777434124765899999999999950


No 123
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=71.68  E-value=6.5  Score=19.35  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999995540899999999
Q gi|254781086|r   23 SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR   55 (176)
Q Consensus        23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~   55 (176)
                      +.+..-+|+|+|.-+++ +++.+++.+..+.|+
T Consensus        67 G~fl~aiInFlIia~vv-fl~Vk~~n~~~~~~~   98 (127)
T PRK13953         67 GAFIQSIVDFLIIAFAI-FIFVKLLTSFIKKKE   98 (127)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
T ss_conf             99999999999999999-999999999988402


No 124
>PRK08024 consensus
Probab=70.82  E-value=8.2  Score=18.73  Aligned_cols=68  Identities=15%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             CCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf             8998859887688999--999999999999999--------955408999999999999999999--9999999999999
Q gi|254781086|r   11 SRFPPFDTSTFLSQFF--WLAIIFGIFYWVTHR--------FILPRLSSIMEVRRNLISSDQEKM--DSAKREVESMISS   78 (176)
Q Consensus        11 ~gmpqld~~~f~~q~f--w~~I~F~il~~il~~--------~~~~pi~~~l~~R~~~I~~~l~~A--~~~~~eae~~~~~   78 (176)
                      ..||+|..++..+-.+  |+.|.|+-++.+|-.        ++.-=+-.++..|+.-+..+|..|  +....+.+++..+
T Consensus         2 ~~~~~f~~~~l~pry~~~wl~i~ll~l~~~LP~~~~~~lg~~lg~l~y~~~~~rr~ia~~NL~~aFPe~s~~e~~~i~~~   81 (306)
T PRK08024          2 TNLPKFSRALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGLGRLAMRFMKRRAKIAHRNLELCFPEMSEQERRAMVVK   81 (306)
T ss_pred             CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             97997723430816899999999999999887999999999999999986436989999999986899999999999999


No 125
>pfam05680 ATP-synt_E ATP synthase E chain. This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit.
Probab=70.29  E-value=8.5  Score=18.66  Aligned_cols=30  Identities=23%  Similarity=0.537  Sum_probs=25.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             988598876889999999999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRF   42 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~   42 (176)
                      ||+...+-++.-+=|.++..+|+|...+..
T Consensus         1 m~~~~vsp~i~~~R~saL~~Gi~yGa~h~~   30 (81)
T pfam05680         1 MPPVTVSPLINVLRYSALVAGVVYGAKHQR   30 (81)
T ss_pred             CCCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             997000258999999999999999899998


No 126
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=69.92  E-value=8.6  Score=18.61  Aligned_cols=71  Identities=15%  Similarity=0.001  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDM  130 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~  130 (176)
                      ++.|...+.+|++..++=     .....+.+++.++..++...........+..-+.-...++..+.+.++.|...
T Consensus       484 ~~ei~~m~~~a~~~~~~d-----~~~r~~~e~~~~~e~~~~~~~~~l~~~~~~l~~~~~~~i~~~~~~l~~~~~~~  554 (595)
T PRK01433        484 KTEIDIMLENAYKNAKID-----YTTRLLQEAIIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAIKAR  554 (595)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999989999-----99999999999999999999999997455099999999999999999998667


No 127
>pfam04612 GspM General secretion pathway, M protein. This is a family of membrane proteins involved in the secretion of a number of molecules in Gram-negative bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers.
Probab=69.18  E-value=8.9  Score=18.52  Aligned_cols=52  Identities=6%  Similarity=-0.032  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999554089999999999999999999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESM   75 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~   75 (176)
                      |..-.+..+++++++++.++|-|+....+.-+..+....+........+...
T Consensus        16 q~ll~~~~~~l~~~l~y~~lw~Pl~~~~~~~~~~~~~~~~~l~~~~~~~~~~   67 (159)
T pfam04612        16 QRLLAVLGAVLLLVLLYLGLWQPLSQRRARAQRRLQAARQLLAWLQEQAPEI   67 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999998899999999999999999999999999999


No 128
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component; InterPro: IPR011299   This entry represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport . Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name 'PTS system, glucose-specific IIABC component' while the Bacillus subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains . This group is most closely related to the N-acetylglucosamine-specific PTS enzymes (IPR010974 from INTERPRO).; GO: 0005355 glucose transmembrane transporter activity, 0015758 glucose transport, 0016021 integral to membrane.
Probab=68.63  E-value=4  Score=20.65  Aligned_cols=20  Identities=15%  Similarity=0.360  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999955408999999
Q gi|254781086|r   34 IFYWVTHRFILPRLSSIMEV   53 (176)
Q Consensus        34 il~~il~~~~~~pi~~~l~~   53 (176)
                      ++..++-.|+||||.+.|+.
T Consensus       191 iv~Gi~L~F~WPPvq~~ln~  210 (518)
T TIGR02002       191 IVVGIVLSFVWPPVQDALNT  210 (518)
T ss_pred             HHHHHHHHHCCCCHHHHHHH
T ss_conf             99989985047866468999


No 129
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=68.33  E-value=9  Score=18.51  Aligned_cols=35  Identities=17%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8998859887688999999999999999999955408999
Q gi|254781086|r   11 SRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI   50 (176)
Q Consensus        11 ~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~   50 (176)
                      .|.|-++.-.|++    -+|+|+|.-+.+ +++.+|+.+.
T Consensus        77 ~g~~~i~yG~fl~----avInFlIiA~vv-F~vVk~~nkl  111 (143)
T PRK13952         77 AGAPVFAYGNFIT----VLINFLILAFII-FLMVKAINRL  111 (143)
T ss_pred             CCCCEEEHHHHHH----HHHHHHHHHHHH-HHHHHHHHHH
T ss_conf             3651020999999----999999999999-9999999998


No 130
>PRK09702 arbutin specific enzyme IIB component of PTS; Provisional
Probab=67.15  E-value=9.5  Score=18.36  Aligned_cols=28  Identities=18%  Similarity=0.333  Sum_probs=16.9

Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8876889----999999999999999999554
Q gi|254781086|r   18 TSTFLSQ----FFWLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus        18 ~~~f~~q----~fw~~I~F~il~~il~~~~~~   45 (176)
                      +..|+.|    ++|.+|-|++|+|++.||=++
T Consensus         6 ~~~~~~~I~vGlv~~~iYY~vF~flI~KfNlk   37 (161)
T PRK09702          6 ADMMLTQIAIGLCFTLLYFVVFRTLILQFNMC   37 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             88999999999999989999999999984899


No 131
>KOG4759 consensus
Probab=66.86  E-value=10  Score=18.23  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   72 VESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ  131 (176)
Q Consensus        72 ae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k  131 (176)
                      +....++|...+..++.++..-+......   ..++....++.+++.+...+.+.++..-
T Consensus       197 ~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll  253 (263)
T KOG4759         197 LKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL  253 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998999999999999988888736344---7845899999999999999999999999


No 132
>MTH00186 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=66.75  E-value=6  Score=19.58  Aligned_cols=10  Identities=10%  Similarity=0.438  Sum_probs=7.9

Q ss_pred             CCCCCHHHHH
Q ss_conf             9885988768
Q gi|254781086|r   13 FPPFDTSTFL   22 (176)
Q Consensus        13 mpqld~~~f~   22 (176)
                      ||||-|-.|.
T Consensus         1 MPQLSPmnWa   10 (51)
T MTH00186          1 MPQLSPMNWA   10 (51)
T ss_pred             CCCCCCCHHH
T ss_conf             9856753127


No 133
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=66.55  E-value=10  Score=18.19  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5408999999999999999999
Q gi|254781086|r   44 LPRLSSIMEVRRNLISSDQEKM   65 (176)
Q Consensus        44 ~~pi~~~l~~R~~~I~~~l~~A   65 (176)
                      ...+..-++.+...+...+..+
T Consensus        24 Ir~lq~~~e~k~~~l~e~l~~~   45 (175)
T COG4741          24 IRSLQGKVESKARELEETLQKA   45 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998899999999999


No 134
>pfam12072 DUF3552 Domain of unknown function (DUF3552). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important.
Probab=66.32  E-value=10  Score=18.16  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999995540899999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSD   61 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~   61 (176)
                      ++-++|.|++-||+.+.+.-..+...-..-..-|.+.
T Consensus         7 i~~~~iG~~~G~~~~~~~~~~~~~~a~~~A~~Ii~~A   43 (201)
T pfam12072         7 IIALVVGFAIGYFVRKSIAEAKISSAEEEAKQIIEEA   43 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999978999999999999999


No 135
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=65.94  E-value=5.5  Score=19.82  Aligned_cols=19  Identities=32%  Similarity=0.786  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             8899999999999999999
Q gi|254781086|r   22 LSQFFWLAIIFGIFYWVTH   40 (176)
Q Consensus        22 ~~q~fw~~I~F~il~~il~   40 (176)
                      .+.+||+++.|+++||-++
T Consensus        19 ~s~lfw~~vi~~l~yf~l~   37 (372)
T COG3524          19 LSPLFWVTVIIILVYFGLF   37 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             4108999999999998774


No 136
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=64.25  E-value=11  Score=17.92  Aligned_cols=33  Identities=3%  Similarity=0.090  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999554089999999999999
Q gi|254781086|r   28 LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS   60 (176)
Q Consensus        28 ~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~   60 (176)
                      .++.|+++++++|+|+|..|..=+.+....+..
T Consensus       337 ~~l~l~~~~~v~w~vvy~~i~~rL~~~t~al~~  369 (912)
T PRK11466        337 GIVSLCALILILWRVVYRSVTRPLAEQTQALQR  369 (912)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 137
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=63.59  E-value=12  Score=17.84  Aligned_cols=94  Identities=9%  Similarity=0.066  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999999999999----9
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD----M  130 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~----~  130 (176)
                      ++.|+..+++|+...++=.     ..+.+.++|.++..++-.++.......+..-.+-+..++..+.+++.-+..    .
T Consensus       504 ~~ei~~m~~~a~~~~~~D~-----~~~~~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  578 (631)
T PRK00290        504 EEEIERMVKDAEANAEEDK-----KRKEEVEARNQADSLIYQTEKQLKELGDKVPADEKEKIEAAIKELKEALKGEDKEA  578 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             9999999999998899899-----99999999999999999999999863520999999999999999999875589999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254781086|r  131 QKKASQEVYSIVGEVTKDLVRKL  153 (176)
Q Consensus       131 k~~a~~ei~~~a~~~a~~i~~kl  153 (176)
                      -+....++.+.+..++..+..+-
T Consensus       579 ~~~~~~~l~~~~~~~~~~~~~~~  601 (631)
T PRK00290        579 IKAKTEELQQASQKLGEAMYQQA  601 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999855


No 138
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.94  E-value=12  Score=17.77  Aligned_cols=32  Identities=16%  Similarity=0.270  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_conf             999999955408999999999999-----999999999
Q gi|254781086|r   36 YWVTHRFILPRLSSIMEVRRNLIS-----SDQEKMDSA   68 (176)
Q Consensus        36 ~~il~~~~~~pi~~~l~~R~~~I~-----~~l~~A~~~   68 (176)
                      ++++++-.++.| .-++.|+..|.     ..+.....+
T Consensus        20 ~~~~rr~~~k~I-~~Le~rK~~l~~~pv~~el~kvk~L   56 (569)
T PRK04778         20 GYILRKRNYKRI-DELEERKQELEDLPVNEELEKVKKL   56 (569)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             999999999899-9999999998769879999988808


No 139
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.78  E-value=8  Score=18.81  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999995540899
Q gi|254781086|r   26 FWLAIIFGIFYWVTHRFILPRLSS   49 (176)
Q Consensus        26 fw~~I~F~il~~il~~~~~~pi~~   49 (176)
                      +|.++.|.+|++.+.+++|.|=.+
T Consensus        12 a~~t~~~~l~fiavi~~ayr~~~K   35 (60)
T COG4736          12 AWGTIAFTLFFIAVIYFAYRPGKK   35 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             999999999999999999661210


No 140
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=62.63  E-value=11  Score=17.95  Aligned_cols=31  Identities=13%  Similarity=0.298  Sum_probs=20.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             859887688999999999999999999955408999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI   50 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~   50 (176)
                      -++.-.|++    -+|+|+|.-+++ +++.+|+.+.
T Consensus        70 ~i~yG~fl~----aiInFlIia~vv-FliVk~~nk~  100 (134)
T PRK00567         70 TINYGVFIN----AVIDFLIIAFAI-FLVVKLINKL  100 (134)
T ss_pred             EECHHHHHH----HHHHHHHHHHHH-HHHHHHHHHH
T ss_conf             001409999----999999999999-9999999998


No 141
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=62.60  E-value=9.4  Score=18.37  Aligned_cols=34  Identities=12%  Similarity=0.028  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             346899885988768899999999999999999995540
Q gi|254781086|r    8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPR   46 (176)
Q Consensus         8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~p   46 (176)
                      |+.++-+++||..-.     .+..++..++++-.+++||
T Consensus        24 Eee~~~ikidP~~vV-----~~~~av~~lvi~a~~f~p~   57 (57)
T COG4023          24 EEEIKGIKIDPRLVV-----YAGIAVAILVIAAHIFAPP   57 (57)
T ss_pred             CCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHCCC
T ss_conf             136577442841367-----8999999999999862699


No 142
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=62.08  E-value=12  Score=17.67  Aligned_cols=17  Identities=18%  Similarity=0.188  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99554089999999999
Q gi|254781086|r   41 RFILPRLSSIMEVRRNL   57 (176)
Q Consensus        41 ~~~~~pi~~~l~~R~~~   57 (176)
                      +|.+.|=.+--.+|++.
T Consensus        17 ffmiRpQkK~qke~q~m   33 (120)
T PRK06531         17 FFMQRQQKKQAQERQNQ   33 (120)
T ss_pred             HHEECHHHHHHHHHHHH
T ss_conf             86037488999999999


No 143
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.91  E-value=12  Score=17.65  Aligned_cols=12  Identities=25%  Similarity=0.193  Sum_probs=4.7

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             988768899999
Q gi|254781086|r   17 DTSTFLSQFFWL   28 (176)
Q Consensus        17 d~~~f~~q~fw~   28 (176)
                      |.+.++.-++.+
T Consensus         2 ~~~~~i~~i~al   13 (475)
T PRK10361          2 DFSIMVYAVIAL   13 (475)
T ss_pred             CHHHHHHHHHHH
T ss_conf             277999999999


No 144
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.57  E-value=13  Score=17.61  Aligned_cols=19  Identities=5%  Similarity=-0.005  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHH-HHHHHH
Q ss_conf             9999999999999-999554
Q gi|254781086|r   27 WLAIIFGIFYWVT-HRFILP   45 (176)
Q Consensus        27 w~~I~F~il~~il-~~~~~~   45 (176)
                      |+++.++++++++ +.++|.
T Consensus         3 ~l~~~L~~ll~~LQY~lwfg   22 (105)
T PRK00888          3 LLTLVLLALLVWLQYPLWFG   22 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             69999999999999999404


No 145
>pfam06635 NolV Nodulation protein NolV. This family consists of several nodulation protein NolV sequences from different Rhizobium species. The function of this family is unclear.
Probab=61.44  E-value=13  Score=17.60  Aligned_cols=85  Identities=12%  Similarity=0.097  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             999999999999999999999----9999999999999999999999999999999999999999999999999841599
Q gi|254781086|r   84 AIARAHAKEIIDKVVAAAEQN----LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSD  159 (176)
Q Consensus        84 ~eak~ea~~ii~~a~~~a~~~----~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~  159 (176)
                      .-|+.++..++..++...+..    .++-..+...+....+.+...+......    .+.+...+++..+++++++..++
T Consensus        37 eAA~~~A~~vr~~A~~ayE~~r~~Gye~G~~~g~~E~A~li~qt~ae~~~y~a----~lE~~l~~lVle~vRkiLg~fD~  112 (207)
T pfam06635        37 AAAERHLQHVRGWARAAYERELAQGHAEGAKAGAEEMAALIAQATAELAQRKA----VLEQELPQLVFEILRDLLGAFDP  112 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             99999999999999999999999889999999999999999999999999999----99999999999999999860494


Q ss_pred             HHH-HHHHHHHHHH
Q ss_conf             999-9999999942
Q gi|254781086|r  160 ADV-QKILDRKRDG  172 (176)
Q Consensus       160 ~~~-~~~i~~~~~~  172 (176)
                      ... -.+|-..++.
T Consensus       113 ~Ell~r~vR~AL~~  126 (207)
T pfam06635       113 GELLVMAVRHAIEQ  126 (207)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             88999999999998


No 146
>KOG1962 consensus
Probab=60.69  E-value=13  Score=17.52  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999955408999999999
Q gi|254781086|r   30 IIFGIFYWVTHRFILPRLSSIMEVRRN   56 (176)
Q Consensus        30 I~F~il~~il~~~~~~pi~~~l~~R~~   56 (176)
                      -.|++|++++-.-+..-|......|..
T Consensus       103 sGf~LFL~lvI~R~~~ll~~l~~l~~~  129 (216)
T KOG1962         103 SGFVLFLSLVIRRLHTLLRELATLRAN  129 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             599999999999999999999998854


No 147
>pfam09851 DUF2078 Predicted membrane protein (DUF2078). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=59.80  E-value=13  Score=17.42  Aligned_cols=23  Identities=35%  Similarity=0.818  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76889999999999999999999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRF   42 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~   42 (176)
                      .++..+||+++..++++++++.+
T Consensus         9 ~~~~~i~~~lli~~vv~l~~~~~   31 (73)
T pfam09851         9 GLLMLLFWLLLIAGVVYLLVRLF   31 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999997


No 148
>KOG2629 consensus
Probab=58.87  E-value=14  Score=17.32  Aligned_cols=71  Identities=14%  Similarity=0.353  Sum_probs=33.5

Q ss_pred             CCCCCCCCCHH---HHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             46899885988---768---8999999999999999----9999554089999999999999999999999999999999
Q gi|254781086|r    9 FSSRFPPFDTS---TFL---SQFFWLAIIFGIFYWV----THRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISS   78 (176)
Q Consensus         9 ~~~gmpqld~~---~f~---~q~fw~~I~F~il~~i----l~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~   78 (176)
                      .++|||++...   ++.   -+.|-+++.+..+.|-    +++|+.|   .++..+++....+...-...-.++.+.+..
T Consensus        64 ~~~~p~~~~~~P~~~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P---~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~  140 (300)
T KOG2629          64 VSGGPPLLIIQPQQNVLRRWRDYFVMAVILAGIAYAAYRFVKSYVLP---RFLGESKDKLEADKRQLDDQFDKAAKSLNA  140 (300)
T ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67886265517875310049999999999865788999999998888---760765116777788888999999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254781086|r   79 YEES   82 (176)
Q Consensus        79 ~e~~   82 (176)
                      .+..
T Consensus       141 l~~~  144 (300)
T KOG2629         141 LMDE  144 (300)
T ss_pred             HHHH
T ss_conf             9999


No 149
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=58.68  E-value=3.6  Score=20.92  Aligned_cols=49  Identities=10%  Similarity=0.118  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             453346899885988--7688999999999999999999955408999999
Q gi|254781086|r    5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV   53 (176)
Q Consensus         5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~   53 (176)
                      +..++..-|+...++  .-+..+++++...++++++++.|++||.-..|++
T Consensus        59 sF~~t~~e~~~~~~ewk~v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~~~  109 (136)
T cd00922          59 SFGETGPEMNAPTGEWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTE  109 (136)
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             971553336689995168899999999999999999999727989988599


No 150
>MTH00147 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=56.95  E-value=10  Score=18.14  Aligned_cols=10  Identities=10%  Similarity=0.557  Sum_probs=7.5

Q ss_pred             CCCCCHHHHH
Q ss_conf             9885988768
Q gi|254781086|r   13 FPPFDTSTFL   22 (176)
Q Consensus        13 mpqld~~~f~   22 (176)
                      ||||-|=.|+
T Consensus         1 MPQLSPiNWi   10 (51)
T MTH00147          1 MPQLSPINWI   10 (51)
T ss_pred             CCCCCCHHHH
T ss_conf             9966715899


No 151
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=56.39  E-value=15  Score=17.07  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76889999999999999999999554089999999999999999999999999999999999999999999999999999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVA   99 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~   99 (176)
                      +|+.-+.|++|..+|-+++ .|+.-+.+     .++..++.+|+.++       ..+++|+..+.+==.+..++++....
T Consensus         2 ~W~~ali~lvvGiiIG~~~-~R~~~~~~-----~~q~~Le~eLe~~k-------~el~~Yr~ev~~HF~~tA~Ll~~l~~   68 (134)
T PRK11677          2 TWEYALIGLVVGIIIGAVA-MRFGNRKL-----RQQQALQYELEKNK-------AELEEYRQELVDHFARSAELLDTMAK   68 (134)
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHHCCCCH-----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2899999999999999999-99817511-----67999999999999-------99999999999999999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254781086|r  100 AAEQNLEF  107 (176)
Q Consensus       100 ~a~~~~e~  107 (176)
                      .-.+..+.
T Consensus        69 ~Y~~lyqH   76 (134)
T PRK11677         69 DYRQLYQH   76 (134)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 152
>KOG0206 consensus
Probab=55.95  E-value=16  Score=17.02  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             768899999999999999999995540899999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME   52 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~   52 (176)
                      ++.+..||+++.|+.+.-++.+|+|.-+...+-
T Consensus      1046 ~~~~p~fWl~~ll~~v~~Llp~~~~~~l~~~~~ 1078 (1151)
T KOG0206        1046 LLSSPSFWLTLLLTVVAALLPDFVYKSLQRTFF 1078 (1151)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             726725778889999998759999999877718


No 153
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=54.85  E-value=14  Score=17.27  Aligned_cols=28  Identities=18%  Similarity=0.191  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999554089999
Q gi|254781086|r   23 SQFFWLAIIFGIFYWVTHRFILPRLSSIM   51 (176)
Q Consensus        23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l   51 (176)
                      +.+..-+|+|+|.-+++ +++.+++.+..
T Consensus        64 G~fl~avInFlIiA~vi-F~~Vk~~n~~~   91 (120)
T PRK13954         64 GLFIQSVIDFIIIAFAL-FIFVKIANTLM   91 (120)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             99999999999999999-99999999987


No 154
>KOG2927 consensus
Probab=54.70  E-value=7  Score=19.18  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q ss_conf             88768899999999999999999----99554089
Q gi|254781086|r   18 TSTFLSQFFWLAIIFGIFYWVTH----RFILPRLS   48 (176)
Q Consensus        18 ~~~f~~q~fw~~I~F~il~~il~----~~~~~pi~   48 (176)
                      ..+|+...|-.+|.|+|.+++..    .++||-|.
T Consensus       229 l~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~  263 (372)
T KOG2927         229 LAFILVLAIVRLILFGITWILTGGKHGFWLFPNLT  263 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHH
T ss_conf             99999999999999999999737877257536256


No 155
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=53.44  E-value=17  Score=16.77  Aligned_cols=36  Identities=6%  Similarity=0.195  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999
Q gi|254781086|r  116 LLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVR  151 (176)
Q Consensus       116 i~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~  151 (176)
                      ......+.++.+.....+..+.+-+.+......+++
T Consensus       102 ~~~k~~~~~~~~~~~~~e~~~~~~~~i~~ai~~~a~  137 (170)
T COG2825         102 FNKKQQEYEKDLNRREAEEEQKLLEKIQRAIESVAE  137 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999998789999999999999999999


No 156
>pfam11044 TMEMspv1-c74-12 Plectrovirus spv1-c74 ORF 12 transmembrane protein. This is a family of proteins expressed by Plectroviruses. The plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. Except that it is a putative transmembrane protein the function is not known.
Probab=53.30  E-value=17  Score=16.76  Aligned_cols=34  Identities=26%  Similarity=0.643  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76889999999999999999999554089999999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR   54 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R   54 (176)
                      +|++-+|-.+|.+.+|.|+.--. |.+|..+--+.
T Consensus         3 twlt~ifsvviil~if~~~glsi-yqki~qirgKK   36 (49)
T pfam11044         3 TWLTTIFSVVIILGVFAWIGLSI-YQKIRQIRGKK   36 (49)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC
T ss_conf             49999999999999999999999-99999986631


No 157
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=52.94  E-value=17  Score=16.72  Aligned_cols=98  Identities=14%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999995540899999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   27 WLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLE  106 (176)
Q Consensus        27 w~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e  106 (176)
                      -.+|.|++|..++... ++++...|++-...++.--...+-...+.+.++.+.+...++.+.+...+-.  .-.+-+...
T Consensus        10 iiAiAf~vL~I~li~t-lkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~--vf~aV~dl~   86 (139)
T COG4768          10 IIAIAFLVLVIYLIIT-LKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDP--VFDAVKDLG   86 (139)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf             9999999999999999-9987789999999999999987777887899999998999998622876748--999998787


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254781086|r  107 FQREVFEKDLLHKLSNAQNEI  127 (176)
Q Consensus       107 ~~~~~a~~ei~~~~~~a~~~I  127 (176)
                      +.....++.....-..+-...
T Consensus        87 ~SV~~ln~s~r~~~~~~t~~~  107 (139)
T COG4768          87 QSVSDLNQSVRHLATRATNAV  107 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             889999999999999985676


No 158
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=52.80  E-value=18  Score=16.71  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55408999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   43 ILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSN  122 (176)
Q Consensus        43 ~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~  122 (176)
                      ++.-+..-++.-+....+-++.-+..++.=..+..+.+..+...+.|..+     +..+++.+..+..+.+.|+.+. .+
T Consensus        72 f~~~~v~~le~sr~~l~~~v~~l~~~r~~d~~ln~~l~~ni~~ln~ei~~-----r~~a~~~~~~~~~~l~~e~~~r-~~  145 (779)
T PRK11091         72 FLSVVVEQLEESRQRLSRLVQKLEEMRERDLELNVQLKDNIAQLNQEIAE-----REKAEEARQEAFEDLKNEIKER-EE  145 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf             99999999999999999999999998887888888888778886678888-----8888999999999999999998-99


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781086|r  123 AQNEIDD  129 (176)
Q Consensus       123 a~~~I~~  129 (176)
                      ++.++.+
T Consensus       146 ~q~~l~~  152 (779)
T PRK11091        146 TQIELEQ  152 (779)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 159
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase; InterPro: IPR006539    These sequences represent the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other . These ATPases are found only in eukaryotes. ; GO: 0000287 magnesium ion binding, 0004012 phospholipid-translocating ATPase activity, 0005524 ATP binding, 0015914 phospholipid transport, 0016021 integral to membrane.
Probab=52.61  E-value=18  Score=16.69  Aligned_cols=42  Identities=17%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998859887688999999999999999999955408999999
Q gi|254781086|r   12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV   53 (176)
Q Consensus        12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~   53 (176)
                      -|-...+.++.+-.||+.+..++++=++.+|.|+-+.+.+.-
T Consensus      1200 ~~~~~~~~~~~t~~FW~~l~v~~~~~Llp~F~~~~~~~~~~P 1241 (1249)
T TIGR01652      1200 EFYKAAKRVMSTFGFWLVLLVIVLISLLPRFTYKALQRLFRP 1241 (1249)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             241102210002889999999999998799999999997289


No 160
>pfam05545 FixQ Cbb3-type cytochrome oxidase component FixQ. This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon.
Probab=50.84  E-value=19  Score=16.52  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999995540899
Q gi|254781086|r   23 SQFFWLAIIFGIFYWVTHRFILPRLSS   49 (176)
Q Consensus        23 ~q~fw~~I~F~il~~il~~~~~~pi~~   49 (176)
                      .+.+++++.|++|+.++.+.++|.=++
T Consensus        10 a~~~~~l~~~~~Figiv~wa~~p~~k~   36 (49)
T pfam05545        10 ARSWGTLVLFVFFIGIVFWAYSPRRKK   36 (49)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             999999999999999999872877504


No 161
>pfam06160 EzrA Septation ring formation regulator, EzrA. During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.
Probab=50.59  E-value=19  Score=16.49  Aligned_cols=31  Identities=10%  Similarity=0.187  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999955408999999999999
Q gi|254781086|r   27 WLAIIFGIFYWVTHRFILPRLSSIMEVRRNLIS   59 (176)
Q Consensus        27 w~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~   59 (176)
                      -++|.|++ .+++++-.++.| .-++.|+..|.
T Consensus         8 ivii~~~~-~~~~rk~~~k~I-~~Le~rk~~l~   38 (559)
T pfam06160         8 IVIVAYLA-GYFLRKKIYKQI-DELEERKEELM   38 (559)
T ss_pred             HHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             99999999-999988899999-99999999987


No 162
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=49.87  E-value=20  Score=16.42  Aligned_cols=14  Identities=29%  Similarity=0.653  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254781086|r   28 LAIIFGIFYWVTHR   41 (176)
Q Consensus        28 ~~I~F~il~~il~~   41 (176)
                      +++.|++|||++.|
T Consensus        10 lili~~vf~f~~iR   23 (108)
T PRK05886         10 FLLIMGGFMYFASR   23 (108)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999999316


No 163
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.69  E-value=20  Score=16.40  Aligned_cols=27  Identities=4%  Similarity=0.106  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999
Q gi|254781086|r   57 LISSDQEKMDSAKREVESMISSYEESL   83 (176)
Q Consensus        57 ~I~~~l~~A~~~~~eae~~~~~~e~~l   83 (176)
                      .|.+.+...++...++.+...++...-
T Consensus        44 ~Ieg~l~~le~~~~~a~~~~~~~~~~~   70 (368)
T COG4046          44 YIEGALAELEKMENDAMKKVVELAVPR   70 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             788899999998889999999985122


No 164
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.59  E-value=19  Score=16.47  Aligned_cols=30  Identities=13%  Similarity=-0.003  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999995540899999
Q gi|254781086|r   23 SQFFWLAIIFGIFYWVTHRFILPRLSSIME   52 (176)
Q Consensus        23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~   52 (176)
                      +..-|++|+-++.+.++-||+.|-+.+++.
T Consensus       149 ~l~~~~Li~t~~~v~LltYf~iP~vs~l~~  178 (195)
T COG3224         149 PLPTRVLIGTLCSVSLLTYFVIPLVSRLYA  178 (195)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             800999999999999887888888888888


No 165
>KOG4403 consensus
Probab=49.46  E-value=20  Score=16.38  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=30.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998859887688999999999999999999955408999999999999999999999999999999999999999999
Q gi|254781086|r   12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAH   89 (176)
Q Consensus        12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~e   89 (176)
                      |-|-.++..|.-. |  ++.|+++..+..+|++-.=.+.-.+.-.+..++++.-..    |++.+.+.++.|.+|+.+
T Consensus       204 Gpp~~~~~n~~KD-~--iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~----aEqsl~dlQk~Lekar~e  274 (575)
T KOG4403         204 GPPYKTNHNWTKD-F--ILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQR----AEQSLEDLQKRLEKAREE  274 (575)
T ss_pred             CCCCCCCCCHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_conf             6875788631356-8--999999998605554544316789999999988888888----998999999999999875


No 166
>TIGR01932 hflC HflC protein; InterPro: IPR010200   HflK and HflC are paralogs encoded by tandem genes in proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. ; GO: 0005515 protein binding, 0008233 peptidase activity, 0016021 integral to membrane.
Probab=49.43  E-value=20  Score=16.38  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   80 EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI  141 (176)
Q Consensus        80 e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~  141 (176)
                      +..-.-.+.|.+++-...|..+.+..++.+.+++.|..+++++|+++-...|.++-.+..++
T Consensus       237 esi~nRm~~ER~~iA~~~RS~G~~~aee~~~~~~~Ev~~iLseA~~~A~~ikgEgDA~AAK~  298 (345)
T TIGR01932       237 ESIYNRMRSEREQIARKHRSQGEEKAEELRGKADYEVLKILSEAKRTARIIKGEGDAEAAKI  298 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999899999999998443666889999852527788788998873534312576999999


No 167
>TIGR00659 TIGR00659 conserved hypothetical protein TIGR00659; InterPro: IPR005261    Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. .
Probab=49.36  E-value=12  Score=17.70  Aligned_cols=43  Identities=14%  Similarity=0.188  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5645334689988598876889999999999999999999554089999999999
Q gi|254781086|r    3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNL   57 (176)
Q Consensus         3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~   57 (176)
                      +...|+.=||||++-            =.|+||..++...+-|-+.+.|.=|++.
T Consensus       133 Am~vS~~iGGiPavt------------AV~Vil~gllG~vfG~~lL~~~~v~~~~  175 (227)
T TIGR00659       133 AMEVSEKIGGIPAVT------------AVLVILTGLLGAVFGPLLLKLFRVKDKV  175 (227)
T ss_pred             HHHHHHHCCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             997502038803699------------9999999988887999999972640377


No 168
>PRK12704 phosphodiesterase; Provisional
Probab=49.31  E-value=20  Score=16.37  Aligned_cols=19  Identities=16%  Similarity=0.247  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999
Q gi|254781086|r   86 ARAHAKEIIDKVVAAAEQN  104 (176)
Q Consensus        86 ak~ea~~ii~~a~~~a~~~  104 (176)
                      -+.+..+++.+...+.++.
T Consensus        64 ~~~el~~~~~~~~~~LE~i   82 (455)
T PRK12704         64 KESELEELIAEQLQELERI   82 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999998


No 169
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=48.47  E-value=21  Score=16.29  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=37.7

Q ss_pred             HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8876889999-----------9999999999999995540899999999999999999999999999999
Q gi|254781086|r   18 TSTFLSQFFW-----------LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMI   76 (176)
Q Consensus        18 ~~~f~~q~fw-----------~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~   76 (176)
                      .++|+.|. |           .....++++.+++..+|.|+..-.+.-...|+.....-.=.+++|..+.
T Consensus        21 ~~~~~~q~-w~grspREqrLv~~~gavLll~i~YwgiWqP~~~R~e~aq~~iq~e~qlL~wvk~~A~~I~   89 (178)
T PRK09731         21 GEHWLAQH-LAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETMLQQLVAMNTRLKSAAPDII   89 (178)
T ss_pred             HHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15699998-6689889999999879999999999998836989999999999999999999998878999


No 170
>KOG4503 consensus
Probab=48.03  E-value=21  Score=16.24  Aligned_cols=47  Identities=28%  Similarity=0.451  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf             8876889999999999999999999554---08999999999999999999
Q gi|254781086|r   18 TSTFLSQFFWLAIIFGIFYWVTHRFILP---RLSSIMEVRRNLISSDQEKM   65 (176)
Q Consensus        18 ~~~f~~q~fw~~I~F~il~~il~~~~~~---pi~~~l~~R~~~I~~~l~~A   65 (176)
                      ..-|+ |+|.-.|.-+++++++-+|++.   -+..-++.|+..++..+.++
T Consensus        82 l~gYL-QLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~c  131 (230)
T KOG4503          82 LIGYL-QLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAEC  131 (230)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999-999999999999999999999988777788999999999999999


No 171
>COG5085 Predicted membrane protein [Function unknown]
Probab=48.03  E-value=21  Score=16.24  Aligned_cols=47  Identities=28%  Similarity=0.451  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf             8876889999999999999999999554---08999999999999999999
Q gi|254781086|r   18 TSTFLSQFFWLAIIFGIFYWVTHRFILP---RLSSIMEVRRNLISSDQEKM   65 (176)
Q Consensus        18 ~~~f~~q~fw~~I~F~il~~il~~~~~~---pi~~~l~~R~~~I~~~l~~A   65 (176)
                      ..-|+ |+|.-.|.-+++++++-+|++.   -+..-++.|+..++..+.++
T Consensus        82 l~gYL-QLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~c  131 (230)
T COG5085          82 LIGYL-QLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAEC  131 (230)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999-999999999999999999999988777788999999999999999


No 172
>CHL00094 dnaK heat shock protein 70
Probab=47.75  E-value=21  Score=16.22  Aligned_cols=93  Identities=10%  Similarity=0.082  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999999999999----9
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD----M  130 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~----~  130 (176)
                      .+.|...+++|++..++     .+..+.+.+++.++..++-..+.......+..-.+-+..++..+.+.+.-+..    .
T Consensus       504 ~~ei~~~~~ea~~~~~~-----D~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~ek~~i~~~l~~~~~~l~~~~~~~  578 (622)
T CHL00094        504 EDEVERMVKEAEKNAAE-----DKEKRENIDLKNQAESLCYQSEKQLKEFEDKIDEEKKQKIENLIEKLREALSKDNYEE  578 (622)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             99999999999988998-----9999998998889999999999999973550999999999999999999875489999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254781086|r  131 QKKASQEVYSIVGEVTKDLVRK  152 (176)
Q Consensus       131 k~~a~~ei~~~a~~~a~~i~~k  152 (176)
                      -+....++.+....+...+...
T Consensus       579 ~~~~~~~l~~~~~~~~~~~y~~  600 (622)
T CHL00094        579 IKELSEELQTALMEIGKQVYSK  600 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999860


No 173
>pfam01442 Apolipoprotein Apolipoprotein A1/A4/E domain. These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I, Apolipoprotein A-IV, and Apolipoprotein E.
Probab=47.26  E-value=21  Score=16.17  Aligned_cols=82  Identities=12%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40899999999999999999999-99999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   45 PRLSSIMEVRRNLISSDQEKMDS-AKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNA  123 (176)
Q Consensus        45 ~pi~~~l~~R~~~I~~~l~~A~~-~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a  123 (176)
                      ..+.+-.+.=+..+..++++.+. +..-.+......+..+.+.+....-..++-+.......++.+..+..-++......
T Consensus        30 ~~l~~~~~~lr~~l~~dleelr~~l~p~~~el~~~~~~~~eelr~~l~p~~~el~~~~~~~~eeLr~~l~~~~eelr~~~  109 (191)
T pfam01442        30 AQLSKETEALREELQKDLEEVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRERLNRDAEELRRKLAPYAEELRDRL  109 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88889999999999858999999878999999999998999999987778999999888659999999999999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254781086|r  124 QNE  126 (176)
Q Consensus       124 ~~~  126 (176)
                      ...
T Consensus       110 ~~~  112 (191)
T pfam01442       110 RQN  112 (191)
T ss_pred             HHH
T ss_conf             977


No 174
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=46.33  E-value=22  Score=16.08  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9887688999999999999999999955
Q gi|254781086|r   17 DTSTFLSQFFWLAIIFGIFYWVTHRFIL   44 (176)
Q Consensus        17 d~~~f~~q~fw~~I~F~il~~il~~~~~   44 (176)
                      ...++..|++|.++.++++++++.++=+
T Consensus        46 ~~~~~~rq~~~~~lg~~~~~~~~~~~~~   73 (381)
T COG0772          46 PFYFLIRQLVWLLLGLILALLVILRLPL   73 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             1689999999999999999999986759


No 175
>pfam07431 DUF1512 Protein of unknown function (DUF1512). This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=45.90  E-value=22  Score=16.04  Aligned_cols=50  Identities=6%  Similarity=0.082  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999995540899999999999999999999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEES   82 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~   82 (176)
                      +.|.++.|++ +|++     ++|.-+.-  ...|.+.+..-++..+++.+...+|-+.
T Consensus         7 II~~l~~~if-I~l~-----QriQl~~~--~~~Ie~~l~~Le~~~~~s~k~~~~~lkk   56 (356)
T pfam07431         7 ILSMLLFFLL-IILL-----QRIQVYRL--FRDIEGALSELEKFLNDAKKKVVELLKK   56 (356)
T ss_pred             HHHHHHHHHH-HHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999-9999-----99999999--9999999999999988899999999851


No 176
>pfam03245 Phage_lysis Bacteriophage lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database.
Probab=45.05  E-value=23  Score=15.96  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254781086|r   74 SMISSYEESLAIARAHAKEIID   95 (176)
Q Consensus        74 ~~~~~~e~~l~eak~ea~~ii~   95 (176)
                      .+-.+|.+.|.+|+.+...+..
T Consensus        61 ~LD~k~tkEL~~Ak~e~d~Lr~   82 (151)
T pfam03245        61 ALDAKHTKELADAKAENDRLRA   82 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9978999999988977999999


No 177
>pfam02472 ExbD Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.
Probab=44.55  E-value=20  Score=16.29  Aligned_cols=26  Identities=19%  Similarity=0.383  Sum_probs=18.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             68998859887688999999999999
Q gi|254781086|r   10 SSRFPPFDTSTFLSQFFWLAIIFGIF   35 (176)
Q Consensus        10 ~~gmpqld~~~f~~q~fw~~I~F~il   35 (176)
                      ....|++|.+-+++-+|-++|+|++.
T Consensus         2 ~~~~~~initPliDv~flLLiFFmvt   27 (128)
T pfam02472         2 KEEEPEINLTPLIDVVFLLLIFFMVT   27 (128)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             86566646532899999999999860


No 178
>PRK10633 hypothetical protein; Provisional
Probab=44.44  E-value=24  Score=15.90  Aligned_cols=38  Identities=16%  Similarity=0.482  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34689988598876-88999999999999999999955408
Q gi|254781086|r    8 DFSSRFPPFDTSTF-LSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus         8 ~~~~gmpqld~~~f-~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      ....|.-+| |..| .|=+ -+-+.|+++.+++.|++++-|
T Consensus        34 ~~~~~~~Gl-P~WF~~SCi-~~p~lf~~l~~~mVk~~Fkdi   72 (80)
T PRK10633         34 GVAPGFTGL-PRWFEMACL-LTPLLFILLCWAMVKFIFRDI   72 (80)
T ss_pred             CCCCCCCCC-HHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC
T ss_conf             886555677-099999999-999999999999999986079


No 179
>pfam07798 DUF1640 Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.
Probab=44.13  E-value=24  Score=15.87  Aligned_cols=60  Identities=7%  Similarity=0.075  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   80 EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY  139 (176)
Q Consensus        80 e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~  139 (176)
                      ...+..++......+..........++....+++.++.+.....+-.+..+|.....+..
T Consensus        64 r~el~~~~~~e~~~lr~e~e~L~~dve~L~~~L~~ei~k~~a~~klDlNleK~riree~~  123 (177)
T pfam07798        64 KSELQSLEKSEFSNLQAENEKLKNDLEKLKNRLRDEIDKVTAGVRLDLNLEKGRIREELA  123 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998777589999999999999999999999999998615257654555207789998


No 180
>KOG3970 consensus
Probab=43.80  E-value=24  Score=15.84  Aligned_cols=29  Identities=17%  Similarity=0.167  Sum_probs=13.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4689988598876889999999999999999999
Q gi|254781086|r    9 FSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRF   42 (176)
Q Consensus         9 ~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~   42 (176)
                      +++|-||-     .-+.-|++|..++|-|+..-+
T Consensus       241 g~s~rP~~-----~~~ra~fli~lgvLafi~~i~  269 (299)
T KOG3970         241 GGSGRPQE-----AKKRALFLIFLGVLAFITIIM  269 (299)
T ss_pred             CCCCCCHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_conf             77889889-----999999999999999999999


No 181
>pfam02936 COX4 Cytochrome c oxidase subunit IV. Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The uncharacterized yeast protein YGL226W appears to be the yeast COX IV subunit.
Probab=43.64  E-value=18  Score=16.60  Aligned_cols=30  Identities=17%  Similarity=0.070  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999955408999999
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEV   53 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~   53 (176)
                      -+|+++..-+.++++++.|++||+-..|++
T Consensus        80 ~~~~~i~~s~~~~~~~r~~~~pp~P~T~~~  109 (143)
T pfam02936        80 GVLAGLGISFGLFILMRTFAYPPLPKTMNK  109 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             999999999999999999647999988699


No 182
>pfam03938 OmpH Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Probab=43.47  E-value=25  Score=15.81  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999
Q gi|254781086|r  108 QREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK  152 (176)
Q Consensus       108 ~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k  152 (176)
                      .......++.......+.++...+......+...+......+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~i~~~i~~ia~~  127 (157)
T pfam03938        83 ELQQKQQELQQKQQAAQQELQQKQQELLQPIYDKIDKAIKEVAKE  127 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999998


No 183
>COG3924 Predicted membrane protein [Function unknown]
Probab=43.43  E-value=25  Score=15.81  Aligned_cols=43  Identities=19%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64533468998859887688999999999999999999955408
Q gi|254781086|r    4 SSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus         4 ~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      ++-.....||.+| |-.|.---+-+-+.|+++-+.+.||++.-|
T Consensus        30 AYlp~~t~G~~gf-P~WFE~aCi~lPllFi~l~~~mvkfif~DI   72 (80)
T COG3924          30 AYLPGNTPGFTGF-PLWFEMACILLPLLFIVLCWAMVKFIFRDI   72 (80)
T ss_pred             HCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7078888887777-199999999999999999999999954378


No 184
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=43.36  E-value=25  Score=15.80  Aligned_cols=58  Identities=10%  Similarity=0.126  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5408999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   44 LPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAA  101 (176)
Q Consensus        44 ~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a  101 (176)
                      .++-....++|.+.|+.++..-++..........+.+..|.+.+.+...+..+-....
T Consensus        29 ~s~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~   86 (420)
T COG4942          29 AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA   86 (420)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5766786788899899999999999999999999999999999988999999999988


No 185
>pfam11027 DUF2615 Protein of unknown function (DUF2615). This small. approximately 100 residue, family is conserved from worms to humans. It is cysteine-rich with a characteristic FDxCEC sequence motif. The function is not known.
Probab=43.05  E-value=25  Score=15.77  Aligned_cols=16  Identities=19%  Similarity=0.621  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8768899999999999
Q gi|254781086|r   19 STFLSQFFWLAIIFGI   34 (176)
Q Consensus        19 ~~f~~q~fw~~I~F~i   34 (176)
                      ++|.--+.|+++.+++
T Consensus        54 ~~~~i~m~w~~~a~~l   69 (103)
T pfam11027        54 SGFMLMMAWMLLAMAL   69 (103)
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             0899999999999999


No 186
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=42.90  E-value=25  Score=15.75  Aligned_cols=32  Identities=9%  Similarity=0.072  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999999999999999999554089999999
Q gi|254781086|r   22 LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR   54 (176)
Q Consensus        22 ~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R   54 (176)
                      .+.+..-+|+|+|.-+++ +++.+++.+....|
T Consensus        66 ~G~fl~avI~FlIiA~vv-Fl~Vk~~nk~~~~~   97 (130)
T PRK13955         66 YGNFIQTIFDFLIIAASI-FMFVKVFNKLTSKK   97 (130)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf             999999999999999999-99999999998865


No 187
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=42.47  E-value=25  Score=15.71  Aligned_cols=19  Identities=21%  Similarity=0.639  Sum_probs=15.2

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             9885988768899999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAII   31 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~   31 (176)
                      ||-+.+-|-++|.+|+.-.
T Consensus         1 ~p~~~~p~~la~m~w~~ai   19 (275)
T COG3031           1 MPTLRFPFHLANMYWVYAI   19 (275)
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             9743004888878899999


No 188
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III; InterPro: IPR004678 This family describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase 1.9.3.1 from EC.; GO: 0004129 cytochrome-c oxidase activity, 0006118 electron transport.
Probab=42.05  E-value=26  Score=15.67  Aligned_cols=60  Identities=17%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             887688999999999999999999955408999----9-999999999999999999999999999
Q gi|254781086|r   18 TSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI----M-EVRRNLISSDQEKMDSAKREVESMISS   78 (176)
Q Consensus        18 ~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~----l-~~R~~~I~~~l~~A~~~~~eae~~~~~   78 (176)
                      |-.|+- .|-..|.|.+.|+++.|.++|=+.++    | -..+..+.+++....+......+.+.+
T Consensus        27 PrWWlW-~F~aTIvWg~~Y~F~aYPa~plv~~yT~G~L~~~~r~~v~~ei~~~~~~~~a~~~KL~~   91 (303)
T TIGR00782        27 PRWWLW-TFYATIVWGVGYLFVAYPAWPLVSGYTKGLLGWSSRSQVEEEIKKFNEKNAALEAKLAQ   91 (303)
T ss_pred             CHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             557999-99999999999999871333333332455213440577999999999885479987457


No 189
>TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'; InterPro: IPR012758   DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.   RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.  Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.    This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0008270 zinc ion binding, 0006350 transcription.
Probab=41.87  E-value=26  Score=15.66  Aligned_cols=50  Identities=16%  Similarity=0.132  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999-------------9999999999999999999999999
Q gi|254781086|r   99 AAAEQNLEFQREVFEKDLLHKLSNA-------------QNEIDDMQKKASQEVYSIVGEVTKD  148 (176)
Q Consensus        99 ~~a~~~~e~~~~~a~~ei~~~~~~a-------------~~~I~~~k~~a~~ei~~~a~~~a~~  148 (176)
                      .+|.+.+++.+.+|+++++.++++.             ++.++..--+.+.++++.+.+++.+
T Consensus       683 ~eA~~~I~~~i~~A~~~V~~LIe~Y~~GeLeplPGRt~EEtlE~~I~~~L~~~Rd~~G~va~k  745 (901)
T TIGR02390       683 KEAKEEIEELIEKAEKRVDKLIEEYRNGELEPLPGRTVEETLEMKILEVLGKARDEAGEVAEK  745 (901)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             789999999999999999999998527823018778644655889999987776665112010


No 190
>pfam05137 PilN Fimbrial assembly protein (PilN).
Probab=41.02  E-value=27  Score=15.57  Aligned_cols=12  Identities=8%  Similarity=0.135  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999995
Q gi|254781086|r   32 FGIFYWVTHRFI   43 (176)
Q Consensus        32 F~il~~il~~~~   43 (176)
                      +++++.+...++
T Consensus        28 ~~~~~~~~~~~~   39 (162)
T pfam05137        28 AGVLLAFAGWLY   39 (162)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 191
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains.  Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex.  HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins.  HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=40.53  E-value=27  Score=15.53  Aligned_cols=29  Identities=10%  Similarity=-0.079  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999
Q gi|254781086|r   99 AAAEQNLEFQREVFEKDLLHKLSNAQNEI  127 (176)
Q Consensus        99 ~~a~~~~e~~~~~a~~ei~~~~~~a~~~I  127 (176)
                      .+++...+..+.+++.+.++.+.+|+.+-
T Consensus       197 ~~ae~~a~~~~~~A~~ea~~~~~~Aea~~  225 (266)
T cd03404         197 NEAEAYANEVVPKARGEAARIIQEAEAYK  225 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998889999999999999


No 192
>pfam05992 SbmA_BacA SbmA/BacA-like family. The Rhizobium meliloti bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homolog of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.
Probab=40.36  E-value=27  Score=15.51  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=35.0

Q ss_pred             CCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             689988--598876889999999999999999999554089999999999999999
Q gi|254781086|r   10 SSRFPP--FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQE   63 (176)
Q Consensus        10 ~~gmpq--ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~   63 (176)
                      ||++|-  +.+ ..|.-++|.++.+.++-.++..++..|+.+ ++-++++.+.+..
T Consensus       148 S~~~~~~~~~g-~ipg~Lv~~a~iya~~gt~i~~~iGr~L~~-Ln~~~q~~EAdfR  201 (315)
T pfam05992       148 SKHVPVLPIFG-DIPHGLVWAALVWSLGGTVFLMVVGIKLPG-LEFNNQKVEAAYR  201 (315)
T ss_pred             CCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHH
T ss_conf             58886463157-775079999999999999999997145666-8888888767899


No 193
>TIGR02210 rodA_shape rod shape-determining protein RodA; InterPro: IPR011923    This protein is a member of the FtsW/RodA/SpoVE family. It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologues from a number of both rod-shaped and coccoid bacteria (including four proteins in Bacillus anthracis) are not found in this family.; GO: 0008360 regulation of cell shape, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=40.27  E-value=27  Score=15.50  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8876889999999999999999
Q gi|254781086|r   18 TSTFLSQFFWLAIIFGIFYWVT   39 (176)
Q Consensus        18 ~~~f~~q~fw~~I~F~il~~il   39 (176)
                      +..+..|++|++|.|++++.+.
T Consensus        32 ~~~~~kQ~~~~~~G~~~~~~~~   53 (416)
T TIGR02210        32 SSLAIKQLVWFIIGLVLMIIVS   53 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999998


No 194
>TIGR00867 deg-1 degenerin; InterPro: IPR004726   The Caenorhabditis elegans mec-4 gene encodes a subunit of a candidate mechano-sensitive ion channel that plays a critical role in touch reception . The product is a mechano-sensory protein (degenerin). At least some of the proteins in this group form part of a mechano-transducing complex for touch sensitivity. Others include the acid-sensing ion channels, ASIC1-3 that are homo- or hetero-oligomeric neuronal H+-gated channels that mediate pain sensation in response to tissue acidosis. Mammalian ENaC (IPR004724 from INTERPRO) is important for the maintenance of Na+ balance and the regulation of blood pressure. Three homologous ENaC subunits, a, b and g, have been shown to assemble to form the highly Na+-selective channel. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=40.26  E-value=27  Score=15.50  Aligned_cols=42  Identities=14%  Similarity=0.221  Sum_probs=26.8

Q ss_pred             CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899885-9887688999999999999999999955408999999
Q gi|254781086|r   11 SRFPPF-DTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV   53 (176)
Q Consensus        11 ~gmpql-d~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~   53 (176)
                      -|-|-. ..+.+..-+||++|+|+.|..++.-+++= |.++...
T Consensus         9 HGip~~~~a~N~~~R~~W~~~fl~cl~~f~~q~~~~-i~Ky~~~   51 (757)
T TIGR00867         9 HGIPMVATASNGFSRYVWVLLFLFCLLMFLYQAYLL-ISKYNRY   51 (757)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCC
T ss_conf             003602462516889999999999999999999999-9997158


No 195
>PRK13411 molecular chaperone DnaK; Provisional
Probab=39.38  E-value=28  Score=15.42  Aligned_cols=93  Identities=11%  Similarity=0.166  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999999999999-----
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD-----  129 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~-----  129 (176)
                      .+.|...+.+|++..++     .+....+.++|.++..++-..+...+...+..-..-+..++..+.+.+.-+..     
T Consensus       504 ~~ei~~m~~~a~~~~~~-----D~~~~e~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~~i~~~~~~~~~~l~~~~~~~  578 (655)
T PRK13411        504 SSEIERMRQEAEKYAEE-----DRRRKQLVELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLAAALTDPNISL  578 (655)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999999975987-----8999999998989999999999998850340999999999999999999976899388


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -99999999999999999999999
Q gi|254781086|r  130 -MQKKASQEVYSIVGEVTKDLVRK  152 (176)
Q Consensus       130 -~k~~a~~ei~~~a~~~a~~i~~k  152 (176)
                       +-+....++.+.+..+..++...
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~y~~  602 (655)
T PRK13411        579 EELRQQLEEFRQVLLAIGAEVYQQ  602 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999986


No 196
>TIGR02978 phageshock_pspC phage shock protein C; InterPro: IPR014320   All members of this protein are the phage shock protein PspC. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor; PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin over expression, ethanol, heat shock and protein export defects..
Probab=39.17  E-value=29  Score=15.40  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=18.9

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999-99999999999999999999999
Q gi|254781086|r   55 RNLISSDQEK-MDSAKREVESMISSYEESLAIAR   87 (176)
Q Consensus        55 ~~~I~~~l~~-A~~~~~eae~~~~~~e~~l~eak   87 (176)
                      +.+.=+.-.. ++.+-.+.+......|.+|.+.+
T Consensus        78 k~k~Wq~g~~~p~~~L~~~~~~~~~~e~RLr~mE  111 (128)
T TIGR02978        78 KSKFWQAGQTSPKQALREVKRELRRLERRLRNME  111 (128)
T ss_pred             CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             5410022057888999999999999888989768


No 197
>pfam01741 MscL Large-conductance mechanosensitive channel, MscL.
Probab=39.05  E-value=29  Score=15.38  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999999999955408999
Q gi|254781086|r   23 SQFFWLAIIFGIFYWVTHRFILPRLSSI   50 (176)
Q Consensus        23 ~q~fw~~I~F~il~~il~~~~~~pi~~~   50 (176)
                      +.+..-+|+|+|.-+++ +++.+|+.+.
T Consensus        71 G~fl~avI~FlIia~vv-Fl~Vk~~nk~   97 (127)
T pfam01741        71 GLFIQAVINFLIIAFAI-FLVIKAINKL   97 (127)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf             99999999999999999-9999999998


No 198
>pfam04387 PTPLA Protein tyrosine phosphatase-like protein, PTPLA. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types.
Probab=38.52  E-value=29  Score=15.33  Aligned_cols=45  Identities=20%  Similarity=0.474  Sum_probs=24.0

Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             468998-859887688999999999999999999955408999999999999
Q gi|254781086|r    9 FSSRFP-PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLIS   59 (176)
Q Consensus         9 ~~~gmp-qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~   59 (176)
                      .+-.|| .+|.++..   .|+++.++++|+....+.+   ..++.+|++...
T Consensus       113 ~s~~~Pn~~n~~~~~---~~~l~~~l~~yipg~~~ly---~hM~~QRkK~l~  158 (161)
T pfam04387       113 YSLEMPNALNFSFSY---YYFLIFVLLLYIPGFPFLY---SHMLKQRRKVLG  158 (161)
T ss_pred             CCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC
T ss_conf             563578632535159---9999999999997599999---999999999737


No 199
>pfam06459 RR_TM4-6 Ryanodine Receptor TM 4-6. This region covers TM regions 4-6 of the ryanodine receptor 1 family.
Probab=38.07  E-value=30  Score=15.29  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             88999999999999999
Q gi|254781086|r   22 LSQFFWLAIIFGIFYWV   38 (176)
Q Consensus        22 ~~q~fw~~I~F~il~~i   38 (176)
                      +..+.-++|||++||+=
T Consensus       130 lAL~lAF~INFiLLFyK  146 (217)
T pfam06459       130 LALFLAFAINFILLFYK  146 (217)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999863


No 200
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; InterPro: IPR011920   Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units.    This entry represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of Escherichia coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis .; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=38.06  E-value=30  Score=15.29  Aligned_cols=60  Identities=13%  Similarity=0.137  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf             5988768899999999999999-99999554--------0899-9999999999999999--9999999999999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYW-VTHRFILP--------RLSS-IMEVRRNLISSDQEKM--DSAKREVESMISS   78 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~-il~~~~~~--------pi~~-~l~~R~~~I~~~l~~A--~~~~~eae~~~~~   78 (176)
                      |.|-||+   +|+-|..+.+.. +|-+.+.-        =... ++..|...+..+|+-+  +...++-+.++.+
T Consensus         8 L~Pr~W~---~WLG~g~l~l~vN~LPy~vl~~LG~g~G~l~~~t~~~~R~~ia~rNL~LCFP~~~~~er~~ll~~   79 (308)
T TIGR02207         8 LHPRYWP---TWLGLGVLWLIVNQLPYPVLLALGRGLGRLAMRTLMKRRAKIARRNLELCFPHMSDAERERLLKE   79 (308)
T ss_pred             CCCCCHH---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             6885058---99999999999974408999997155899999988874699999837644877798999999998


No 201
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.65  E-value=30  Score=15.25  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=22.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             988768899999999999999999995540
Q gi|254781086|r   17 DTSTFLSQFFWLAIIFGIFYWVTHRFILPR   46 (176)
Q Consensus        17 d~~~f~~q~fw~~I~F~il~~il~~~~~~p   46 (176)
                      +.++|+...+|+++.+++..++..++.+..
T Consensus       208 ~~s~~l~~~~~l~l~~~~~~~~~~~~~~~~  237 (397)
T COG1459         208 ALSDFLREWGWLLLLIIIIIAIGYLLLLRK  237 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999987999999999999999999805


No 202
>pfam03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region. The family corresponds the N-terminal cytoplasmic domain.
Probab=37.63  E-value=30  Score=15.25  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=15.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             859887688999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHR   41 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~   41 (176)
                      .+|.....--+||  |+|.+|++.|.+
T Consensus         8 ~~DvAql~ly~Fw--iFFagLv~YL~r   32 (135)
T pfam03967         8 YFDVAQLALYAFW--IFFAGLVYYLRR   32 (135)
T ss_pred             CCCHHHHHHHHHH--HHHHHHHHHHHH
T ss_conf             3409999999999--999999998610


No 203
>KOG2180 consensus
Probab=37.36  E-value=31  Score=15.22  Aligned_cols=89  Identities=8%  Similarity=0.081  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             885988768899999999999999999995540899999999999999999----9999999999999999999999999
Q gi|254781086|r   14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEK----MDSAKREVESMISSYEESLAIARAH   89 (176)
Q Consensus        14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~----A~~~~~eae~~~~~~e~~l~eak~e   89 (176)
                      |+||+..|+.++|---.+..-+=         ++..-|..+...+..+|..    -+....+..+.+.+.+..+.+.-.+
T Consensus        17 ~~f~~v~~in~lfp~eqSL~~id---------~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~   87 (793)
T KOG2180          17 PEFNFVEYINELFPAEQSLTNID---------SLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQK   87 (793)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             52238999987441153453379---------999999999999999999998732341200255478899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254781086|r   90 AKEIIDKVVAAAEQNLEFQREVF  112 (176)
Q Consensus        90 a~~ii~~a~~~a~~~~e~~~~~a  112 (176)
                      ..++...| +..+.++.++...+
T Consensus        88 i~eiks~a-e~Te~~V~eiTrdI  109 (793)
T KOG2180          88 IQEIKSVA-ESTEAMVQEITRDI  109 (793)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHH
T ss_conf             89998888-74899999998787


No 204
>PRK06602 NADH dehydrogenase subunit A; Validated
Probab=37.04  E-value=31  Score=15.19  Aligned_cols=31  Identities=35%  Similarity=0.664  Sum_probs=20.8

Q ss_pred             CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             453346899885988--7688999999999999
Q gi|254781086|r    5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il   35 (176)
                      ..+..+.|+++.+..  -|.-+.|..++.|++|
T Consensus        41 K~spyECG~~p~~~~r~~Fsi~fylvailFliF   73 (121)
T PRK06602         41 KLSPYESGFEAFGDARMKFDVRFYLVAILFVIF   73 (121)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             588737797998887766566989999999999


No 205
>PRK10774 cell division protein FtsW; Provisional
Probab=36.86  E-value=31  Score=15.17  Aligned_cols=25  Identities=12%  Similarity=0.044  Sum_probs=17.4

Q ss_pred             CCCHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             859887-6889999999999999999
Q gi|254781086|r   15 PFDTST-FLSQFFWLAIIFGIFYWVT   39 (176)
Q Consensus        15 qld~~~-f~~q~fw~~I~F~il~~il   39 (176)
                      .-||.+ +.-|++|.++.+++++++.
T Consensus        66 ~~~p~~f~~RQli~~~iGl~~~~~~~   91 (405)
T PRK10774         66 ANDPFLFAKRDALYLILAFILALITL   91 (405)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79918999999999999999999999


No 206
>TIGR01400 fliR flagellar biosynthetic protein FliR; InterPro: IPR006303   These sequences represent the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT.; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum.
Probab=35.91  E-value=32  Score=15.08  Aligned_cols=29  Identities=7%  Similarity=0.094  Sum_probs=24.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             988598876889999999999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRF   42 (176)
Q Consensus        13 mpqld~~~f~~q~fw~~I~F~il~~il~~~   42 (176)
                      +||+|- |+++.=+-+++.|+++++.+..+
T Consensus       201 ~PQ~N~-F~iG~Pl~~~~Gl~ll~~~~p~~  229 (248)
T TIGR01400       201 APQLNI-FSIGFPLKILLGLILLYLILPVI  229 (248)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             579999-99985599999999999999999


No 207
>pfam07850 Renin_r Renin receptor-like protein. The sequences featured in this family are similar to a region of the human renin receptor that bears a putative transmembrane spanning segment. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface.
Probab=35.82  E-value=32  Score=15.07  Aligned_cols=30  Identities=17%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             598876889999999999999999999554
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~   45 (176)
                      .|....++-++|+.|.|++-++.+.+.+|.
T Consensus        49 ~dYpviFnIiLW~~v~l~l~v~~i~~~i~~   78 (98)
T pfam07850        49 FDYPVIFNIILWLMVILVLAVIAISYNLWN   78 (98)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf             873799999999999999999998761464


No 208
>pfam03606 DcuC C4-dicarboxylate anaerobic carrier.
Probab=35.62  E-value=33  Score=15.05  Aligned_cols=45  Identities=9%  Similarity=0.015  Sum_probs=22.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             346899885988768899999999999999999995540899999999999
Q gi|254781086|r    8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLI   58 (176)
Q Consensus         8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I   58 (176)
                      ..-.|+|-++. ++.-++.|.+...+...++++|     ..++.++++...
T Consensus       182 q~iaglp~~sg-~~~r~i~~~v~~~~~i~~~~~y-----a~kv~~~p~~s~  226 (456)
T pfam03606       182 AQIAGLPIADG-FGFRLLPWVILTIISIAYLHFY-----AQKIKDDPVYSE  226 (456)
T ss_pred             HHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCHHH
T ss_conf             98739977768-9999999999999999999999-----999970831123


No 209
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; InterPro: IPR011921   Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units.    This family consists of MsbB in Escherichia coli and closely related proteins in other species. MsbB is homologous to HtrB (IPR011920 from INTERPRO) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=35.38  E-value=16  Score=17.01  Aligned_cols=35  Identities=6%  Similarity=0.157  Sum_probs=24.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59887688999999999999999999955408999999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV   53 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~   53 (176)
                      |-|.||+   .|+.|.+++++.++---+-.||.+.|-.
T Consensus        10 l~PkYW~---~WLGv~~l~~lA~~P~klRDk~~~~La~   44 (307)
T TIGR02208        10 LHPKYWG---VWLGVFALVLLAFMPVKLRDKIAKKLAK   44 (307)
T ss_pred             CCCCCCH---HHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             3887304---7899999999970798767568999888


No 210
>PRK06771 hypothetical protein; Provisional
Probab=35.25  E-value=33  Score=15.01  Aligned_cols=12  Identities=42%  Similarity=1.018  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254781086|r   26 FWLAIIFGIFYW   37 (176)
Q Consensus        26 fw~~I~F~il~~   37 (176)
                      ||.+|-+++|-+
T Consensus         3 ~wiiipi~~Fg~   14 (93)
T PRK06771          3 FWMIIPIAIFGF   14 (93)
T ss_pred             EEEEEHHHHHHH
T ss_conf             353409999899


No 211
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=35.24  E-value=33  Score=15.01  Aligned_cols=43  Identities=16%  Similarity=0.122  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999
Q gi|254781086|r   65 MDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEF  107 (176)
Q Consensus        65 A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~  107 (176)
                      ...+-+++..+.++-+..+.+|++-+++++-+|+-+|.+++++
T Consensus       247 V~~AF~DV~~ArqD~er~ineA~aYaN~iiP~ArG~A~rii~e  289 (419)
T PRK10930        247 VKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEE  289 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             9999999999998899999999999975351321389999999


No 212
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=35.23  E-value=33  Score=15.01  Aligned_cols=42  Identities=12%  Similarity=0.054  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999
Q gi|254781086|r   74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKD  115 (176)
Q Consensus        74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~e  115 (176)
                      .+..+.++.+.+++.+...-......+..........+++++
T Consensus        28 ~lk~eqe~~ikea~~k~~ekakk~eee~~n~Yn~al~e~rk~   69 (111)
T PRK06397         28 NIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKE   69 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999989999999999989999866899999999999999988


No 213
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842    This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebsiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in Escherichia coli. Based on this latter finding, it is suggested  that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme .; GO: 0006810 transport, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=34.98  E-value=17  Score=16.80  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=17.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53346899885988768899999
Q gi|254781086|r    6 SSDFSSRFPPFDTSTFLSQFFWL   28 (176)
Q Consensus         6 ~~~~~~gmpqld~~~f~~q~fw~   28 (176)
                      .|+.+||+||=|-..-..+..|-
T Consensus         6 GSAAGGGfPQWNC~C~~C~~aR~   28 (314)
T TIGR02108         6 GSAAGGGFPQWNCNCPNCRGARA   28 (314)
T ss_pred             EECCCCCCCCCCCCCHHHHHHHH
T ss_conf             52267887752568703468773


No 214
>KOG4812 consensus
Probab=34.69  E-value=34  Score=14.96  Aligned_cols=25  Identities=8%  Similarity=0.533  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999995540899
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSS   49 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~   49 (176)
                      +-|+++.|+.|+++...+-|-+|++
T Consensus       225 Lwwi~~vlG~ll~lr~~i~YikVrr  249 (262)
T KOG4812         225 LWWIFLVLGLLLFLRGFINYIKVRR  249 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999876888755


No 215
>TIGR01401 fliR_like_III type III secretion apparatus protein SpaR/YscT/HrcT; InterPro: IPR006304   These sequences represent members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (IPR006303 from INTERPRO).; GO: 0006810 transport, 0016021 integral to membrane.
Probab=34.59  E-value=34  Score=14.95  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=21.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             885988768899999999999999999995540
Q gi|254781086|r   14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPR   46 (176)
Q Consensus        14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~p   46 (176)
                      ||||. |++|+-.=.++.|++++.....++-..
T Consensus       215 pQLNv-F~LslpiKS~~a~~~Llly~~~l~~~~  246 (262)
T TIGR01401       215 PQLNV-FILSLPIKSLLALLILLLYFATLLEEA  246 (262)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             25337-778678999999999999999999999


No 216
>pfam06196 DUF997 Protein of unknown function (DUF997). Family of predicted bacterial membrane protein with unknown function.
Probab=34.42  E-value=34  Score=14.93  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             859887688999999999999999999955408
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      +| |..|.---+.+-+.|.++.+++-|++++-|
T Consensus        36 Gl-P~WF~~SCi~~p~lf~~l~~~mVk~~Fkdi   67 (75)
T pfam06196        36 GF-PLWFEYSCIVGPILFIVLCWLMVKFFFKDI   67 (75)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88-399999999999999999999999987079


No 217
>pfam08269 Cache_2 Cache domain.
Probab=33.91  E-value=35  Score=14.88  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254781086|r   49 SIMEVRRNLISSDQEKMDSAKRE   71 (176)
Q Consensus        49 ~~l~~R~~~I~~~l~~A~~~~~e   71 (176)
                      .++++|+..++.-++.|...-+.
T Consensus         3 ~l~~~rk~~lk~~v~~a~s~i~~   25 (95)
T pfam08269         3 NLIEERKAELKAVVESALSIIKE   25 (95)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999


No 218
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=33.68  E-value=35  Score=14.86  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             CCCCCCHHHHHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf             99885988768899--99999999999999--------99955408999999999999999999--9999999999999
Q gi|254781086|r   12 RFPPFDTSTFLSQF--FWLAIIFGIFYWVT--------HRFILPRLSSIMEVRRNLISSDQEKM--DSAKREVESMISS   78 (176)
Q Consensus        12 gmpqld~~~f~~q~--fw~~I~F~il~~il--------~~~~~~pi~~~l~~R~~~I~~~l~~A--~~~~~eae~~~~~   78 (176)
                      ..|+|+.+|+.+-.  -|+.+.|+-++.+|        .+++..-+-.+...|+.-+..+|.-|  +....+.+.+..+
T Consensus         5 ~~~~f~~~~~~pkyw~~~l~~~~l~lis~LP~~~~~~lg~~lg~lly~~~~~rr~va~~NL~~aFPe~s~~e~~~i~k~   83 (309)
T PRK06860          5 NLPKFSTALLHPKYWLTWLGFGLLWLIVQLPYPVLYKLGRGLGKLALRFMKRRAKIARRNLELCFPEMSEQEREAIVVK   83 (309)
T ss_pred             CCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             6984637651816899999999999999886999999999999999896413999999999983889999999999999


No 219
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=33.58  E-value=35  Score=14.85  Aligned_cols=18  Identities=28%  Similarity=0.521  Sum_probs=9.9

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             998859887688999999
Q gi|254781086|r   12 RFPPFDTSTFLSQFFWLA   29 (176)
Q Consensus        12 gmpqld~~~f~~q~fw~~   29 (176)
                      |||+||.+.|.-.-.|+-
T Consensus        87 gkpPL~~~~~~r~p~w~~  104 (308)
T COG3058          87 GKPPLDISVLPREPHWRK  104 (308)
T ss_pred             CCCCCCHHHCCCCCHHHH
T ss_conf             999755765279807999


No 220
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=33.05  E-value=36  Score=14.79  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
Q ss_conf             99999999999999999999999-------------9999999999999999999999999999999999---------9
Q gi|254781086|r   48 SSIMEVRRNLISSDQEKMDSAKR-------------EVESMISSYEESLAIARAHAKEIIDKVVAAAEQN---------L  105 (176)
Q Consensus        48 ~~~l~~R~~~I~~~l~~A~~~~~-------------eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~---------~  105 (176)
                      ..=+..|.+.+...+........             .......+....+..+...++.++..+...+...         .
T Consensus        46 ~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a~~~~e~  125 (212)
T COG3599          46 NEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQRVFGKAQYKADRYLEDAKIAQEL  125 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999987641113688887788789999877768999999999889999876698899888888999989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999
Q gi|254781086|r  106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYS  140 (176)
Q Consensus       106 e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~  140 (176)
                      +....++...-.+.+...+..++..+.....++-.
T Consensus       126 e~~~~q~~~~~~rl~~~~~~ql~~~~~~~~~~~~~  160 (212)
T COG3599         126 EDLKRQAQVERQRLRSDIEAQLASAKQEDWDEILR  160 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf             99999999999999998999999871430799976


No 221
>TIGR02121 Na_Pro_sym sodium/proline symporter; InterPro: IPR011851    This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. ; GO: 0005298 proline:sodium symporter activity, 0031402 sodium ion binding, 0006814 sodium ion transport, 0015824 proline transport, 0016021 integral to membrane.
Probab=32.80  E-value=35  Score=14.88  Aligned_cols=51  Identities=27%  Similarity=0.582  Sum_probs=36.6

Q ss_pred             CCCCCCC----CCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4533468----99885988768899--999999999999999995540899999999999
Q gi|254781086|r    5 SSSDFSS----RFPPFDTSTFLSQF--FWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLI   58 (176)
Q Consensus         5 ~~~~~~~----gmpqld~~~f~~q~--fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I   58 (176)
                      .+|.=||    |+|+=   .|.+=+  +|.+|-.++=-|+.|+|+=|+++.+=+..+|.|
T Consensus        49 GASDMSGWLLmGLPGA---~y~~G~~~~WIAiGL~iGAy~NW~~vApRLR~YTE~~~dsi  105 (517)
T TIGR02121        49 GASDMSGWLLMGLPGA---LYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEIAKDSI  105 (517)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             0464556787311799---99998999999999999999989998678776634641666


No 222
>pfam07464 ApoLp-III Apolipophorin-III precursor (apoLp-III). This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage.
Probab=32.38  E-value=37  Score=14.72  Aligned_cols=10  Identities=10%  Similarity=0.076  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999942
Q gi|254781086|r  163 QKILDRKRDG  172 (176)
Q Consensus       163 ~~~i~~~~~~  172 (176)
                      +.+.|++++.
T Consensus       142 Kq~yDd~vk~  151 (166)
T pfam07464       142 KQAYDDFVKN  151 (166)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999988


No 223
>pfam02108 FliH Flagellar assembly protein FliH.
Probab=31.71  E-value=38  Score=14.66  Aligned_cols=60  Identities=10%  Similarity=0.300  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999841599999999999994210
Q gi|254781086|r  114 KDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGID  174 (176)
Q Consensus       114 ~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i~~~~~~i~  174 (176)
                      .............+.....+...++-+.+..++..++.. --..+...+-.+|.+.+..+.
T Consensus         5 ~~l~~l~~~l~~~~~~~~~~~e~~l~~La~~ia~kvi~~-el~~~p~~i~~~v~~al~~l~   64 (128)
T pfam02108         5 AQLAALLEELENPLAELDQELEQQLVDLALDIARQVIRR-ELTVDPELILALVREALAALP   64 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHH
T ss_conf             999999999998999999999999999999999999999-973498999999999999713


No 224
>pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.
Probab=31.05  E-value=32  Score=15.11  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=23.2

Q ss_pred             CCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             468998859887688-9999999999999999999554
Q gi|254781086|r    9 FSSRFPPFDTSTFLS-QFFWLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus         9 ~~~gmpqld~~~f~~-q~fw~~I~F~il~~il~~~~~~   45 (176)
                      ..-|+|=|-..+.-- -++-.++.|++++++++.|+|.
T Consensus        73 ~r~GlpF~~~r~~kR~~~~~G~~~f~~~l~~lS~fVW~  110 (383)
T pfam06898        73 ERKGLPFLFFRLRKRRGIVLGILLFVILLYFLSNFIWS  110 (383)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_conf             50471789999888799999999999999978406999


No 225
>pfam05814 DUF843 Baculovirus protein of unknown function (DUF843). This family consists of several Baculovirus proteins of around 85 residues long with no known function.
Probab=30.76  E-value=39  Score=14.56  Aligned_cols=26  Identities=12%  Similarity=0.326  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88999999999999999999955408
Q gi|254781086|r   22 LSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus        22 ~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      ...++.+++.|++|+.++..++.+|=
T Consensus        24 s~li~~~lllfvlF~~~l~vyyinte   49 (83)
T pfam05814        24 SELILTLLVLFVLFFCLLNVYYINTE   49 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             78999999999999998776403897


No 226
>pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=30.38  E-value=40  Score=14.52  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999955408999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN  104 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~  104 (176)
                      ++|++|.++|-+++. |+.-|.+     .++..++.+|+.+       +..+++|+..+.+==....++++.....-.+.
T Consensus         3 li~lvvG~iiG~~~~-R~~~~~~-----~~q~~Le~eLe~~-------k~el~~Y~~ev~~HF~~tA~Ll~~l~~~Y~~l   69 (128)
T pfam06295         3 IIGLIVGLIIGLIIM-RLTNPTY-----KNQKKIKKELEEA-------KEELDEQRQELKDHFAQSAELLETLGKDYHKL   69 (128)
T ss_pred             HHHHHHHHHHHHHHH-HHCCCHH-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999-9727407-----6899999999999-------99999999999999999999999999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254781086|r  105 LEFQ  108 (176)
Q Consensus       105 ~e~~  108 (176)
                      .+..
T Consensus        70 y~Hl   73 (128)
T pfam06295        70 YQHM   73 (128)
T ss_pred             HHHH
T ss_conf             9999


No 227
>KOG3054 consensus
Probab=29.82  E-value=41  Score=14.46  Aligned_cols=22  Identities=9%  Similarity=0.117  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999554
Q gi|254781086|r   24 QFFWLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus        24 q~fw~~I~F~il~~il~~~~~~   45 (176)
                      -+||++|.-++|+.++..|+|.
T Consensus         3 ~~v~vlVaa~llV~~i~l~l~~   24 (299)
T KOG3054           3 EIVAVLVAAALLVAVILLFLWK   24 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3799999999999999999998


No 228
>TIGR00785 dass transporter, divalent anion:Na+ symporter (DASS) family; InterPro: IPR001898   Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins:  Mammalian sodium/sulphate cotransporter . Mammalian renal sodium/dicarboxylate cotransporter , which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 . Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanococcus jannaschii hypothetical protein MJ0672.    These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=29.35  E-value=41  Score=14.41  Aligned_cols=38  Identities=13%  Similarity=0.088  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999554089999999999999999999
Q gi|254781086|r   29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMD   66 (176)
Q Consensus        29 ~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~   66 (176)
                      .|..+++.+++-|.+|||-.+--+++...++.++++-.
T Consensus       222 ~~~llll~~~llY~~fpP~~~~~~~~~~~ak~el~~mG  259 (473)
T TIGR00785       222 GIILLLLVPLLLYVLFPPELKSKDEVDLWAKEELEEMG  259 (473)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             99999999999865267510466438899988652115


No 229
>TIGR02832 spo_yunB sporulation protein YunB; InterPro: IPR014197   This entry represents the sporulation protein YunB. In Bacillus subtilis its expression is controlled by sigmaE.The gene yunB seems to code for a protein involved, at least indirectly, in the pathway leading to the activation of sigmaK. Inactivation of yunB delays sigmaK activation and results in reduced sporulation efficiency ..
Probab=29.31  E-value=41  Score=14.40  Aligned_cols=37  Identities=22%  Similarity=0.426  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8899999999999999999995540899999999999
Q gi|254781086|r   22 LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLI   58 (176)
Q Consensus        22 ~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I   58 (176)
                      +.-+..+++.++.++|++.+.+-|.+.++=+.+-.++
T Consensus         8 l~~~il~~~~~~~~~~i~d~~i~P~~~~~ae~e~~~~   44 (220)
T TIGR02832         8 LISLILFILLLLTFLYIVDSLIKPTLLAVAEVEIKRI   44 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6789999999999999986543689999989999999


No 230
>PRK10588 hypothetical protein; Provisional
Probab=29.15  E-value=42  Score=14.39  Aligned_cols=31  Identities=16%  Similarity=-0.018  Sum_probs=16.6

Q ss_pred             CCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             99885988768899-999999999999999995
Q gi|254781086|r   12 RFPPFDTSTFLSQF-FWLAIIFGIFYWVTHRFI   43 (176)
Q Consensus        12 gmpqld~~~f~~q~-fw~~I~F~il~~il~~~~   43 (176)
                      |+ +|+|-.+.-|. |-=++.++|+.+-+.+|+
T Consensus        65 Gv-GF~PR~~~Wq~lF~Pl~a~~il~~gL~~~f   96 (97)
T PRK10588         65 GV-GFRPKKVLWQGIFCPLLADIVLIVGLIFFF   96 (97)
T ss_pred             CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45-757026889999704879999999999972


No 231
>COG2364 Predicted membrane protein [Function unknown]
Probab=28.99  E-value=41  Score=14.42  Aligned_cols=29  Identities=10%  Similarity=0.206  Sum_probs=18.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98876889999999999999999999554
Q gi|254781086|r   17 DTSTFLSQFFWLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus        17 d~~~f~~q~fw~~I~F~il~~il~~~~~~   45 (176)
                      +|+.|.+..+|++|..+++-+-..-|+-|
T Consensus        99 ~p~~~~~k~i~~~iG~vL~g~Gt~iyv~~  127 (210)
T COG2364          99 TPTALFSKLIFFLIGLVLIGLGTAIYVTA  127 (210)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf             80789999999999999997402126735


No 232
>PRK10132 hypothetical protein; Provisional
Probab=28.44  E-value=43  Score=14.31  Aligned_cols=50  Identities=18%  Similarity=0.161  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999
Q gi|254781086|r   64 KMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFE  113 (176)
Q Consensus        64 ~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~  113 (176)
                      .++.++.+...+....++.|...-..+.+-.++.+.+++....+.+..+.
T Consensus        13 ~~edL~~dl~~LaDtLEeVL~ssgd~ak~e~~~lR~kAe~~LketR~rL~   62 (108)
T PRK10132         13 GVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH   62 (108)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             29999999999999999999974403278999999999999999999874


No 233
>pfam07406 NICE-3 NICE-3 protein. This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC) which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis. The function of NICE-3 is unknown.
Probab=28.12  E-value=15  Score=17.06  Aligned_cols=32  Identities=9%  Similarity=0.235  Sum_probs=14.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68998859887688999999999999999999
Q gi|254781086|r   10 SSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHR   41 (176)
Q Consensus        10 ~~gmpqld~~~f~~q~fw~~I~F~il~~il~~   41 (176)
                      +++|+||.+.+-+--+-..+..|++++.+.++
T Consensus         2 ~~~~~~lsGV~vvlii~~Gvl~~vllfIFaKR   33 (186)
T pfam07406         2 ASLMEKLSGVNVVLVIAYGVLVFVLLFIFVKR   33 (186)
T ss_pred             HHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH
T ss_conf             26887744976986327669999999999988


No 234
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=28.03  E-value=44  Score=14.27  Aligned_cols=99  Identities=17%  Similarity=0.164  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999955408999999999999-----99999999999-----------------9999999999999999
Q gi|254781086|r   29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLIS-----SDQEKMDSAKR-----------------EVESMISSYEESLAIA   86 (176)
Q Consensus        29 ~I~F~il~~il~~~~~~pi~~~l~~R~~~I~-----~~l~~A~~~~~-----------------eae~~~~~~e~~l~ea   86 (176)
                      +|.|..+-+++++-.+..| .-+++|+..|.     +++....+++-                 -........++.|-+|
T Consensus        12 lv~~~~~g~~lRkk~~~rI-~~LEe~K~el~~lPv~dEi~kVK~L~L~GQTe~~Fe~Wrq~W~di~~~~fadvEE~lfeA   90 (570)
T COG4477          12 LVAAYAVGYLLRKKNYQRI-DKLEERKNELLNLPVNDEISKVKKLHLTGQTETKFEEWRQKWDDIVTNSFADVEEHLFEA   90 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9999999999997389899-999998999981994457999752701374199999998788998875053399998778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999
Q gi|254781086|r   87 RAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID  128 (176)
Q Consensus        87 k~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~  128 (176)
                      ..-+..-.=..-...-..++..+.-++.++++++.....-+.
T Consensus        91 E~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~  132 (570)
T COG4477          91 EALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVE  132 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             872335626876635746999999999999999999999999


No 235
>TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export..
Probab=27.97  E-value=44  Score=14.26  Aligned_cols=43  Identities=16%  Similarity=0.181  Sum_probs=28.4

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5645334689988598876889999999999999999999554
Q gi|254781086|r    3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus         3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~   45 (176)
                      +||+++-=|=.-|+=.+--.+|++-.++.|+|+++++-+..++
T Consensus       109 asCgaDnigiyvPyF~TLs~~~l~~t~ivFlImv~~l~f~~yr  151 (196)
T TIGR00779       109 ASCGADNIGIYVPYFVTLSMTELLVTLIVFLIMVAVLCFVAYR  151 (196)
T ss_pred             HCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1367564304516301545999999999999999999999888


No 236
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.49  E-value=34  Score=14.95  Aligned_cols=32  Identities=31%  Similarity=0.588  Sum_probs=18.5

Q ss_pred             CCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53346899885-----988768899999999999999
Q gi|254781086|r    6 SSDFSSRFPPF-----DTSTFLSQFFWLAIIFGIFYW   37 (176)
Q Consensus         6 ~~~~~~gmpql-----d~~~f~~q~fw~~I~F~il~~   37 (176)
                      ..|.=+|||-|     =.++|.++++|++...++|-|
T Consensus       179 fIEvws~mP~lyllii~as~~~p~f~~ll~i~llf~W  215 (341)
T COG4239         179 FIEVWSGMPTLYLLIILASIFQPNFWWLLGIMLLFGW  215 (341)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999844729999999999968547999999999999


No 237
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=27.48  E-value=45  Score=14.21  Aligned_cols=52  Identities=13%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999
Q gi|254781086|r   84 AIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKAS  135 (176)
Q Consensus        84 ~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~  135 (176)
                      .-.++|...+-...+.++++.....+.+++.+...++++|.++-...|.+.-
T Consensus       225 ~rM~aER~~~A~~~raeG~~~a~~Ira~ad~e~~~i~AeA~r~a~~irgegd  276 (334)
T PRK11029        225 NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD  276 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999998789999998988888889998889989999983788


No 238
>pfam05568 ASFV_J13L African swine fever virus J13L protein. This family consists of several African swine fever virus J13L proteins.
Probab=27.42  E-value=45  Score=14.20  Aligned_cols=43  Identities=14%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             598876889999999999999999999554089999999999999999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQE   63 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~   63 (176)
                      --|+||..-.+-.+|..++|+.++.-++|     .+..|+.+-...++
T Consensus        22 ~tpsffsthmytiliaivvliiiiivliy-----lfssrkkkaaaaie   64 (189)
T pfam05568        22 PAPSFFSTHMYTILIAIVVLIIIIIVLIY-----LFSSRKKKAAAAIE   64 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCHHHHHHHHH
T ss_conf             88206778899999999999999999999-----97220367653200


No 239
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=27.21  E-value=45  Score=14.18  Aligned_cols=28  Identities=32%  Similarity=0.704  Sum_probs=17.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9887688999999999999999999955
Q gi|254781086|r   17 DTSTFLSQFFWLAIIFGIFYWVTHRFIL   44 (176)
Q Consensus        17 d~~~f~~q~fw~~I~F~il~~il~~~~~   44 (176)
                      +.+.|+...+|+++.++++.+++.++++
T Consensus       208 ~~s~~l~~~~~~~l~~~~~~~~~~~~~~  235 (397)
T PRK10573        208 ALATFLSQWGWLLLLLGFLLAIANRLLR  235 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999998


No 240
>KOG4610 consensus
Probab=26.94  E-value=46  Score=14.15  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=25.1

Q ss_pred             CCCCCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4689988-------------5988768899999999999999999995540
Q gi|254781086|r    9 FSSRFPP-------------FDTSTFLSQFFWLAIIFGIFYWVTHRFILPR   46 (176)
Q Consensus         9 ~~~gmpq-------------ld~~~f~~q~fw~~I~F~il~~il~~~~~~p   46 (176)
                      -++|+|+             -||.++..    ++=.|+.+.+++.++++|+
T Consensus       137 nseg~~~vatll~q~~valk~n~d~~~q----lieqflll~livgrwllpk  183 (328)
T KOG4610         137 NSEGFEPVATLLGQAGVALKDNPDLRLQ----LIEQFLLLILIVGRWLLPK  183 (328)
T ss_pred             CCCCCCCHHHHHCCCCEEECCCHHHHHH----HHHHHHHHHHHHHHHCCCC
T ss_conf             7778983455632587342158148999----9999999999986321677


No 241
>MTH00170 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=26.89  E-value=46  Score=14.14  Aligned_cols=16  Identities=25%  Similarity=0.879  Sum_probs=10.4

Q ss_pred             CCCCCHHHHHH--HHHHH
Q ss_conf             98859887688--99999
Q gi|254781086|r   13 FPPFDTSTFLS--QFFWL   28 (176)
Q Consensus        13 mpqld~~~f~~--q~fw~   28 (176)
                      ||-|-|=.|+.  -+||+
T Consensus         1 MPHLsPmsWl~a~~~fwf   18 (53)
T MTH00170          1 MPHLSPMSWLTAMIIFWF   18 (53)
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             997554789999999999


No 242
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=26.81  E-value=34  Score=14.92  Aligned_cols=16  Identities=31%  Similarity=0.474  Sum_probs=10.3

Q ss_pred             CCCCCCCCCHHHHHHH
Q ss_conf             4689988598876889
Q gi|254781086|r    9 FSSRFPPFDTSTFLSQ   24 (176)
Q Consensus         9 ~~~gmpqld~~~f~~q   24 (176)
                      .++|+|++|++.+..|
T Consensus       156 ~~~~~pp~df~~lld~  171 (248)
T COG3541         156 EKLGIPPMDFEELLDQ  171 (248)
T ss_pred             HHCCCCCCCHHHHHHH
T ss_conf             6089998429999875


No 243
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated
Probab=26.66  E-value=46  Score=14.11  Aligned_cols=31  Identities=42%  Similarity=0.716  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             453346899885988--7688999999999999
Q gi|254781086|r    5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il   35 (176)
                      ..|..+.|+++.+.+  -|..+.|-.++.|++|
T Consensus        35 K~spyECGf~p~~~~r~~Fsv~FfliailFliF   67 (117)
T MTH00012         35 KLSPFECGFDPKNSARIPFSMRFFLLAIIFIVF   67 (117)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             077816696999987775520089999999999


No 244
>pfam10523 BEN BEN domain. The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.
Probab=26.62  E-value=46  Score=14.11  Aligned_cols=40  Identities=10%  Similarity=-0.025  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             346899885988768899999999999999999995540899999
Q gi|254781086|r    8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME   52 (176)
Q Consensus         8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~   52 (176)
                      .+++|-|+|||.-.     -.+..++.-++-...-.|+.+...|+
T Consensus        29 ~~~~~~~~Ld~~~l-----~~Ir~~v~~~~~~~~~~~~~~~~~I~   68 (78)
T pfam10523        29 DGSDGKPGLDPNKL-----NAIRNYVEERFPLEKKVWRECLQSIN   68 (78)
T ss_pred             CCCCCCCCCCHHHH-----HHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             56666625998999-----99999999988964368999999999


No 245
>pfam06305 DUF1049 Protein of unknown function (DUF1049). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=26.42  E-value=47  Score=14.09  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7688999999999999999999955408
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      +..|...|++++|++-+++.+-+.+|..
T Consensus        28 ~~~pl~l~ll~~f~~G~~lg~L~~~~~~   55 (80)
T pfam06305        28 GEFPLSLLLLIAFALGFLLGWLISLPFY   55 (80)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7603999999999999999999999999


No 246
>TIGR00819 ydaH AbgT transporter family; InterPro: IPR011540   The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs . p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae . Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity ..
Probab=26.39  E-value=47  Score=14.08  Aligned_cols=53  Identities=13%  Similarity=0.187  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85988768899999999999999999995540899999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDS   67 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~   67 (176)
                      |-|....+|.+.=.+|.|++|+|.+.-.+|..+++.+...++-..-..|.-++
T Consensus       305 P~~~~V~~SPF~K~IV~lI~LlF~~~~~~YG~~TR~~R~~~~~~~~M~E~M~~  357 (527)
T TIGR00819       305 PITGLVAGSPFLKSIVVLIILLFALVSLVYGIITRSLRREADLVNLMIESMKE  357 (527)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             87772348831678999999999998898865654320000147888754887


No 247
>smart00030 CLb CLUSTERIN Beta chain.
Probab=26.32  E-value=47  Score=14.08  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             540899999999---999999999999999999999999999999999999999999
Q gi|254781086|r   44 LPRLSSIMEVRR---NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKV   97 (176)
Q Consensus        44 ~~pi~~~l~~R~---~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a   97 (176)
                      .+.++.+|+.+.   ..+-..|+.+.+-+++|-++..+.+++|.+...-+++-+...
T Consensus        31 vKqMK~~mer~~eeh~~lm~tLek~kkeKeeAl~~~~e~e~kL~Eee~vCnetm~~l   87 (206)
T smart00030       31 VKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMAL   87 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998712899999999999999899999999999999988898888989999


No 248
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=25.99  E-value=47  Score=14.04  Aligned_cols=14  Identities=21%  Similarity=0.211  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999554089999
Q gi|254781086|r   38 VTHRFILPRLSSIM   51 (176)
Q Consensus        38 il~~~~~~pi~~~l   51 (176)
                      +..+++++|+.-++
T Consensus        68 l~~r~~~K~~~~ll   81 (556)
T PRK11560         68 LFGRRFWRVLASLV   81 (556)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             87689999999999


No 249
>MTH00161 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=25.93  E-value=48  Score=14.03  Aligned_cols=31  Identities=42%  Similarity=0.720  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             453346899885988--7688999999999999
Q gi|254781086|r    5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il   35 (176)
                      ..|+.+.|+.|.+.+  -|..+.|-.++.|++|
T Consensus        33 K~spyECGf~p~~~~r~~Fsi~FylvailFliF   65 (113)
T MTH00161         33 KNSPFECGFDPKSSARLPFSLRFFLIAIIFLIF   65 (113)
T ss_pred             HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             088857697999987777760699999999999


No 250
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391   These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=25.60  E-value=48  Score=13.99  Aligned_cols=25  Identities=8%  Similarity=-0.101  Sum_probs=15.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             334689988598876889999999999999
Q gi|254781086|r    7 SDFSSRFPPFDTSTFLSQFFWLAIIFGIFY   36 (176)
Q Consensus         7 ~~~~~gmpqld~~~f~~q~fw~~I~F~il~   36 (176)
                      ....+||||-||     ++|..+|+-++|+
T Consensus        51 ~p~~fg~~g~N~-----~lfn~i~tgiLfi   75 (675)
T TIGR01497        51 APALFGTKGKNL-----RLFNAIVTGILFI   75 (675)
T ss_pred             HHHCCCCCCCCH-----HHHHHHHHHHHHH
T ss_conf             341378998668-----9999999999999


No 251
>pfam05337 CSF-1 Macrophage colony stimulating factor-1 (CSF-1). Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption.
Probab=25.34  E-value=49  Score=13.97  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=17.1

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             564533468998859887688999999999999999
Q gi|254781086|r    3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWV   38 (176)
Q Consensus         3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~i   38 (176)
                      +....+++++ ||+-.     -+||+++-=+||+++
T Consensus       211 he~Q~egssd-PQlp~-----fvf~lLvPsIILVLL  240 (285)
T pfam05337       211 HERQHEGSSD-PQLPE-----FVFHLLVPSIILVLL  240 (285)
T ss_pred             CCCCCCCCCC-CCCCC-----HHHHHHHHHHHHHHH
T ss_conf             2012478998-66631-----123201103678886


No 252
>pfam03279 Lip_A_acyltrans Bacterial lipid A biosynthesis acyltransferase.
Probab=25.22  E-value=49  Score=13.95  Aligned_cols=66  Identities=15%  Similarity=0.178  Sum_probs=31.4

Q ss_pred             CCCCCHHHHHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf             9885988768899--99999999999999--------99955408999999999999999999--9999999999999
Q gi|254781086|r   13 FPPFDTSTFLSQF--FWLAIIFGIFYWVT--------HRFILPRLSSIMEVRRNLISSDQEKM--DSAKREVESMISS   78 (176)
Q Consensus        13 mpqld~~~f~~q~--fw~~I~F~il~~il--------~~~~~~pi~~~l~~R~~~I~~~l~~A--~~~~~eae~~~~~   78 (176)
                      ||+|..++.-+..  .|+++.|+-++-+|        ..++..-+-.+...|+..+..+|.-|  +....+.+++..+
T Consensus         1 ~~~f~~~~l~pky~~~wl~~~ll~l~~~LP~~~~~~lg~~lg~l~~~~~~~rr~va~~NL~~~fPe~s~~e~~~l~~~   78 (295)
T pfam03279         1 DPKFKKELLHPRYWLTWLGIGVLRLLAALPYSALRRLGKGLGRLAGRFGKRRRKIARKNLALCFPEMSEAEREKIIDQ   78 (295)
T ss_pred             CCCCCHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             996741012846799999999999999888999999999999999896440889999999996799999999999999


No 253
>COG3952 Predicted membrane protein [Function unknown]
Probab=25.07  E-value=49  Score=13.93  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59887688999999999999999999955408
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi   47 (176)
                      |+.+....++.|.+|.|...+++-.+|+..=+
T Consensus        15 lh~~~~~~~l~W~LiG~~g~~lFt~Rf~VQw~   46 (113)
T COG3952          15 LHLNLPKAFLSWKLIGFSGQLLFTGRFVVQWL   46 (113)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30447387789999988999999899999999


No 254
>PTZ00234 variable surface protein Vir12; Provisional
Probab=24.83  E-value=34  Score=14.94  Aligned_cols=41  Identities=15%  Similarity=0.126  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             859887688999999999999999999955408999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRN   56 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~   56 (176)
                      .||.+||=. ++--+-+.++++||..|+--.||..-+.+|+.
T Consensus       358 ~LdSNffRN-IIMaaAILGtIfFLFYYN~SS~lkS~~~KrKr  398 (433)
T PTZ00234        358 ILKSEYFRH-SIVGASIIGVLVFLFFFFKSTPIRSQTNKGEK  398 (433)
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
T ss_conf             000189999-99999999999998630036664345787666


No 255
>pfam06212 GRIM-19 GRIM-19 protein. This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-# and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity.
Probab=24.71  E-value=50  Score=13.89  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=16.5

Q ss_pred             CCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             346899885988-----7688999999999999999999
Q gi|254781086|r    8 DFSSRFPPFDTS-----TFLSQFFWLAIIFGIFYWVTHR   41 (176)
Q Consensus         8 ~~~~gmpqld~~-----~f~~q~fw~~I~F~il~~il~~   41 (176)
                      .-.||.|+++..     .+++-...+++.++++.+-.++
T Consensus        10 PP~GGY~pv~ykR~~p~~g~sg~~~~~~~~~~~~~G~y~   48 (130)
T pfam06212        10 PPPGGYGPIPFKRNLPKTGFSGYAMFATGAGATAFGYYR   48 (130)
T ss_pred             CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999998866022038866788589999999999999999


No 256
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.70  E-value=50  Score=13.89  Aligned_cols=56  Identities=13%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5988768--899999999999999999995540899999999999999999999999999999999999999
Q gi|254781086|r   16 FDTSTFL--SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAI   85 (176)
Q Consensus        16 ld~~~f~--~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~e   85 (176)
                      +|..-|+  +++|.-+..-+..+.+.|.|+|.   ..++++..           .+.+=+.+...|..+...
T Consensus        14 ~Ni~eWpl~~rlv~~lL~~~~V~~lGy~f~~s---~k~eel~~-----------~~~eEe~LKs~~q~K~~~   71 (211)
T COG3167          14 LNIGEWPLAPRLVFCLLAVAAVLGLGYAFYLS---GKLEELEE-----------LEAEEEELKSTYQQKAIQ   71 (211)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_conf             56543200379999999999999999999854---07888999-----------987799999999999998


No 257
>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725    Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle.    Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=24.66  E-value=50  Score=13.89  Aligned_cols=70  Identities=7%  Similarity=0.046  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD  129 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~  129 (176)
                      +..|.+...+|+...+     .-+..+..-++|.++..++-.+.......-+......+.+++..+.+.++.+..
T Consensus       502 ~~Ei~rm~~eAe~~~~-----~D~~~~E~~e~rN~ad~~~y~~e~~l~e~gd~~~~~~k~~~~~~~~~~~~~~~~  571 (598)
T TIGR02350       502 EEEIERMVKEAEANAE-----EDKKRKEEVEARNEADSLIYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKG  571 (598)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             8999999999999898-----638888888753368999999999987421014778899999999999999850


No 258
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=24.63  E-value=49  Score=13.93  Aligned_cols=32  Identities=31%  Similarity=0.666  Sum_probs=19.6

Q ss_pred             CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             6453346899885988--7688999999999999
Q gi|254781086|r    4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il   35 (176)
                      +..|..+.|++|++.+  -|..+.|-.+|.|++|
T Consensus        32 eK~spyECGf~p~~~ar~~Fsi~FylvailFliF   65 (115)
T MTH00106         32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLF   65 (115)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH
T ss_conf             2388847798999876666731259999999999


No 259
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=24.56  E-value=50  Score=13.87  Aligned_cols=93  Identities=9%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999------
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID------  128 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~------  128 (176)
                      ++.|+..+++|++..++=     +..+.+.++|.++..++-..+...... +..-..-+..++..+.+.++.++      
T Consensus       529 ~~ei~~mi~ea~~~~~~D-----~~~re~~e~kn~~e~~i~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  602 (657)
T PTZ00186        529 KEQIEQMIRDSEQHAEAD-----RVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMENPNVAK  602 (657)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             999999999999889988-----999999998888999999999764020-35998899999999999999974898478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999
Q gi|254781086|r  129 DMQKKASQEVYSIVGEVTKDLVRKL  153 (176)
Q Consensus       129 ~~k~~a~~ei~~~a~~~a~~i~~kl  153 (176)
                      ..-+.+..++.+.+..++..+..+-
T Consensus       603 ~~~~~~~~~l~~~~~~~~~~~y~~~  627 (657)
T PTZ00186        603 DDLAAATDKLQKAVMECGRTEYQQA  627 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999861


No 260
>pfam11696 DUF3292 Protein of unknown function (DUF3292). This eukaryotic family of proteins has no known function.
Probab=24.12  E-value=51  Score=13.82  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=15.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59887688999999999999999999955408999
Q gi|254781086|r   16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI   50 (176)
Q Consensus        16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~   50 (176)
                      |+..||..=+|-+++ ..++.+++--+++||...+
T Consensus       129 Fc~vYf~AWllD~l~-P~~~~~Li~LI~~P~~R~~  162 (641)
T pfam11696       129 FCAVYFVAWLLDLLV-PTIFGFLITLVLWPPSRKY  162 (641)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHEECCCHHHH
T ss_conf             788999999998899-9999999997027421300


No 261
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128   The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=24.12  E-value=51  Score=13.82  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999995540
Q gi|254781086|r   26 FWLAIIFGIFYWVTHRFILPR   46 (176)
Q Consensus        26 fw~~I~F~il~~il~~~~~~p   46 (176)
                      +|.++.|+||+.|+-++..++
T Consensus        24 ~~~~~~~~iL~gL~~~~~~s~   44 (613)
T TIGR02759        24 YAALILFVILTGLILWLVASA   44 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHCCH
T ss_conf             999999999999999985560


No 262
>TIGR02282 MltB lytic murein transglycosylase B; InterPro: IPR011757   This family consists of lytic murein transglycosylases (murein hydrolases) related to MltB (P41052 from SWISSPROT), which is a 38 kDa membrane-bound lipoprotein in Escherichia coli. The N-terminal region of this protein contains a lipoprotein-processing site which is conserved in about half the members of this family. Proteolytic cleavage of MltB produces a fully-active, soluble form of this enzyme known as Slt35 (for soluble lytic transglycosylase). This enzyme catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. Its physiological role is unknown as deletion of the gene shows no obvious phenotype , though it has been suggested to play a role in recycling of muropeptides during cell elongation and/or cell division.   The Slt35 enzyme is a monomer with an ellipsoid shape and is composed of three distinct domains known as the alpha, beta and core domains , . The alpha domain contains mainly alpha-helices, while the beta domain consists of a five-stranded antiparallel beta-sheet flanked by a short alpha-helix. The core domain is sandwiched between the alpha and beta domains and its fold is similar to that of lysozyme, but contains a single metal ion binding site in a helix-loop-helix module that is similar to the eukaryotic EF-hand calcium-binding fold, though in this case the loop is slightly longer than usual. Binding of Ca(2+) to this EF hand motif has been shown to be important for thermal stability of the protein . The substrate binding sites are found in the cleft formed by the core domain of the enzyme .   Members of this family do not contain the putative peptidoglycan binding domain described by IPR002477 from INTERPRO, which is associated with several other classes of bacterial cell wall lytic enzymes..
Probab=24.05  E-value=31  Score=15.14  Aligned_cols=10  Identities=30%  Similarity=0.677  Sum_probs=7.5

Q ss_pred             CCCCCCHHHH
Q ss_conf             9988598876
Q gi|254781086|r   12 RFPPFDTSTF   21 (176)
Q Consensus        12 gmpqld~~~f   21 (176)
                      |||||=||+|
T Consensus       176 G~pQFMPSSY  185 (323)
T TIGR02282       176 GIPQFMPSSY  185 (323)
T ss_pred             CCCCCCHHHH
T ss_conf             6666650356


No 263
>pfam01098 FTSW_RODA_SPOVE Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE
Probab=23.95  E-value=52  Score=13.80  Aligned_cols=21  Identities=29%  Similarity=0.319  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             876889999999999999999
Q gi|254781086|r   19 STFLSQFFWLAIIFGIFYWVT   39 (176)
Q Consensus        19 ~~f~~q~fw~~I~F~il~~il   39 (176)
                      .+|..|++|.++.+++++++.
T Consensus        36 ~~~~kQ~~~~~iG~~~~~~~~   56 (356)
T pfam01098        36 FFFKRQLVYLLLGFIIFVVLL   56 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999


No 264
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related 
Probab=23.77  E-value=52  Score=13.78  Aligned_cols=30  Identities=17%  Similarity=0.243  Sum_probs=18.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899885988768899999999999999999
Q gi|254781086|r   11 SRFPPFDTSTFLSQFFWLAIIFGIFYWVTH   40 (176)
Q Consensus        11 ~gmpqld~~~f~~q~fw~~I~F~il~~il~   40 (176)
                      -|.|.-||.+|..+.+|....++.++.+..
T Consensus        86 Tn~p~~DPD~~~~~~~~~~~~~~~~~~~~~  115 (207)
T cd03514          86 TNDPEKDPDHFLLEWLVARSLFITLLVIAI  115 (207)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             485988802888999999999999999999


No 265
>KOG3807 consensus
Probab=23.76  E-value=52  Score=13.78  Aligned_cols=11  Identities=9%  Similarity=0.317  Sum_probs=4.9

Q ss_pred             CCCCCCCCCHH
Q ss_conf             46899885988
Q gi|254781086|r    9 FSSRFPPFDTS   19 (176)
Q Consensus         9 ~~~gmpqld~~   19 (176)
                      ..|..|||||.
T Consensus         5 ~~~~~~~l~~~   15 (556)
T KOG3807           5 SPASVPGLNPT   15 (556)
T ss_pred             CCCCCCCCCCC
T ss_conf             65640025751


No 266
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=23.75  E-value=52  Score=13.78  Aligned_cols=28  Identities=14%  Similarity=0.240  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999955408999999
Q gi|254781086|r   25 FFWLAIIFGIFYWVTHRFILPRLSSIMEV   53 (176)
Q Consensus        25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~   53 (176)
                      +.-.+|+|+|.-|.+ .++.+++.+..+.
T Consensus        73 Fi~~vinFlIiAf~i-Fl~Vk~inkl~~~  100 (130)
T COG1970          73 FIQAVINFLIIAFAI-FLVVKAINKLRRK  100 (130)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf             999999999999999-9999999998887


No 267
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=23.64  E-value=53  Score=13.76  Aligned_cols=13  Identities=15%  Similarity=0.164  Sum_probs=5.1

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9887688999999
Q gi|254781086|r   17 DTSTFLSQFFWLA   29 (176)
Q Consensus        17 d~~~f~~q~fw~~   29 (176)
                      |...|.--++|++
T Consensus        31 ~v~~~~vR~~~vl   43 (119)
T PRK10697         31 DVPVKLVRIIVVL   43 (119)
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9935999999999


No 268
>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H;  RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.
Probab=23.29  E-value=53  Score=13.72  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=12.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             859887688999999999999999999
Q gi|254781086|r   15 PFDTSTFLSQFFWLAIIFGIFYWVTHR   41 (176)
Q Consensus        15 qld~~~f~~q~fw~~I~F~il~~il~~   41 (176)
                      .||.....--+||  |+|..|++.|.+
T Consensus         9 ~~DvAql~ly~FW--iFFagLv~YL~r   33 (246)
T cd00226           9 YFDLAQLVIYAFW--IFFAGLIYYLRR   33 (246)
T ss_pred             EEEHHHHHHHHHH--HHHHHHHHHHHC
T ss_conf             3259999999999--999999998612


No 269
>PRK11465 hypothetical protein; Provisional
Probab=23.22  E-value=54  Score=13.71  Aligned_cols=37  Identities=35%  Similarity=0.678  Sum_probs=18.1

Q ss_pred             CCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             46899885988768---89999999999999999999554
Q gi|254781086|r    9 FSSRFPPFDTSTFL---SQFFWLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus         9 ~~~gmpqld~~~f~---~q~fw~~I~F~il~~il~~~~~~   45 (176)
                      .++|+.++|...|.   .++-|+++.-+.+|+++++...|
T Consensus       122 ~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~llR~l~~~  161 (741)
T PRK11465        122 TGSPHKPFNPQTFSNALTHFLMLAVLVFGFYWLIRLCALP  161 (741)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4488777654689999999999999999999999999999


No 270
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=23.17  E-value=54  Score=13.71  Aligned_cols=10  Identities=30%  Similarity=0.650  Sum_probs=5.9

Q ss_pred             CCCCCHHHHH
Q ss_conf             9885988768
Q gi|254781086|r   13 FPPFDTSTFL   22 (176)
Q Consensus        13 mpqld~~~f~   22 (176)
                      .|+++..+|+
T Consensus        94 ~Pp~~~~t~l  103 (126)
T PRK10144         94 NPPLTGQTLV  103 (126)
T ss_pred             ECCCCCCHHH
T ss_conf             1899956189


No 271
>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.15  E-value=54  Score=13.71  Aligned_cols=29  Identities=14%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998859887688999999999999999999
Q gi|254781086|r   12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHR   41 (176)
Q Consensus        12 gmpqld~~~f~~q~fw~~I~F~il~~il~~   41 (176)
                      -+||+|. ++++.-+-+++.++++|+++.-
T Consensus       206 ~~PQinv-f~ig~Pl~i~~Gl~lL~~~lp~  234 (258)
T COG1684         206 LAPQLNV-FFIGFPLKIAVGLLLLYLILPL  234 (258)
T ss_pred             CCCCCCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2542006-8755319999999999999999


No 272
>TIGR02214 spoVD_pbp stage V sporulation protein D; InterPro: IPR011927    This entry describes the SpoVD family of homologs of the cell division protein FtsI, a penicillin binding protein. This family is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of SpoVD..
Probab=23.13  E-value=44  Score=14.21  Aligned_cols=30  Identities=10%  Similarity=0.193  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHH
Q ss_conf             999999999999999-9955408--99999999
Q gi|254781086|r   26 FWLAIIFGIFYWVTH-RFILPRL--SSIMEVRR   55 (176)
Q Consensus        26 fw~~I~F~il~~il~-~~~~~pi--~~~l~~R~   55 (176)
                      ..+||+|+++|++|. |++|=.+  .+.+.+|-
T Consensus         3 ~~~Li~~~~lf~~~~~rL~yv~v~~g~~y~~~A   35 (660)
T TIGR02214         3 IVILISIVVLFLILSLRLFYVQVFRGSRYKEMA   35 (660)
T ss_pred             EHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHH
T ss_conf             134789999999987421037897144478887


No 273
>MTH00101 ATP6 ATP synthase F0 subunit 6; Validated
Probab=23.12  E-value=54  Score=13.70  Aligned_cols=50  Identities=26%  Similarity=0.281  Sum_probs=25.2

Q ss_pred             CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             885988768-89999999999999999999554-089999999999999999
Q gi|254781086|r   14 PPFDTSTFL-SQFFWLAIIFGIFYWVTHRFILP-RLSSIMEVRRNLISSDQE   63 (176)
Q Consensus        14 pqld~~~f~-~q~fw~~I~F~il~~il~~~~~~-pi~~~l~~R~~~I~~~l~   63 (176)
                      -||||++.. -++.|+++.|..+++.-.+++.| +.....+-=.+.+.+++.
T Consensus         7 s~Fdp~s~~~~~l~~~~~~~~~~~~~~~~~~vp~r~~~~~e~~~~~~~~~i~   58 (226)
T MTH00101          7 ASFITPTMMGLPIVILIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMM   58 (226)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             2266848887999999999999999644531476999999999999999998


No 274
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=23.09  E-value=54  Score=13.70  Aligned_cols=19  Identities=21%  Similarity=0.604  Sum_probs=9.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8859887688999999999999
Q gi|254781086|r   14 PPFDTSTFLSQFFWLAIIFGIF   35 (176)
Q Consensus        14 pqld~~~f~~q~fw~~I~F~il   35 (176)
                      |+|+..|+   +.|+.=.++++
T Consensus        99 Pp~~~~T~---lLW~~Pv~lll  117 (153)
T COG3088          99 PPLTGQTL---LLWGLPVVLLL  117 (153)
T ss_pred             CCCCHHHH---HHHHHHHHHHH
T ss_conf             99743589---99995999999


No 275
>pfam11119 DUF2633 Protein of unknown function (DUF2633). This family is conserved largely in the Bacillaceae family. Several members are named as YfgG. The function is not known.
Probab=23.03  E-value=54  Score=13.69  Aligned_cols=19  Identities=26%  Similarity=0.142  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999554
Q gi|254781086|r   27 WLAIIFGIFYWVTHRFILP   45 (176)
Q Consensus        27 w~~I~F~il~~il~~~~~~   45 (176)
                      -++|+|+|||.=+-|....
T Consensus        13 VLLISFiilFgRl~Y~aI~   31 (59)
T pfam11119        13 VLLISFIIFFGRLIYSAIN   31 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999998774


No 276
>PRK11089 glucose-specific PTS system IIBC components; Provisional
Probab=22.93  E-value=44  Score=14.24  Aligned_cols=18  Identities=39%  Similarity=0.554  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999955
Q gi|254781086|r   27 WLAIIFGIFYWVTHRFIL   44 (176)
Q Consensus        27 w~~I~F~il~~il~~~~~   44 (176)
                      |.++..++.++++++|++
T Consensus       355 ~~~i~vGi~~~~iYy~vF  372 (477)
T PRK11089        355 WLFPIVGIGYAIVYYTIF  372 (477)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             789999999999999999


No 277
>COG4327 Predicted membrane protein [Function unknown]
Probab=22.90  E-value=54  Score=13.67  Aligned_cols=14  Identities=14%  Similarity=0.501  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254781086|r   24 QFFWLAIIFGIFYW   37 (176)
Q Consensus        24 q~fw~~I~F~il~~   37 (176)
                      ..+|++|+|++.+|
T Consensus        25 L~vwflVSfvvi~f   38 (101)
T COG4327          25 LGVWFLVSFVVILF   38 (101)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 278
>MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=22.85  E-value=54  Score=13.67  Aligned_cols=32  Identities=41%  Similarity=0.722  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             6453346899885988--7688999999999999
Q gi|254781086|r    4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il   35 (176)
                      +..|+.+.|+.|++.+  -|.-+.|-.+|.|++|
T Consensus        32 eK~spyECGfdp~~~aR~~FsirFfLvailFlIF   65 (114)
T MTH00202         32 EKSSPFECGFDPKESSRIPFSFRFFLMAVIFLVF   65 (114)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             2078846687999877776620299999999999


No 279
>KOG2264 consensus
Probab=22.48  E-value=55  Score=13.62  Aligned_cols=27  Identities=37%  Similarity=0.798  Sum_probs=15.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             68998859887688999999-99999999
Q gi|254781086|r   10 SSRFPPFDTSTFLSQFFWLA-IIFGIFYW   37 (176)
Q Consensus        10 ~~gmpqld~~~f~~q~fw~~-I~F~il~~   37 (176)
                      .|-.|+|.-+-|+- +.|+. |.|+|+|+
T Consensus        15 ~s~~~~lR~S~~~r-~~w~~~~l~iil~~   42 (907)
T KOG2264          15 GSFVPSLRVSAFLR-FIWFVFILYIILYN   42 (907)
T ss_pred             CCCCEEEEEHHHHH-HHHHHHHHHHHHHH
T ss_conf             87470345121378-89999999999863


No 280
>pfam00507 Oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.
Probab=22.31  E-value=56  Score=13.60  Aligned_cols=32  Identities=34%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             6453346899885988--7688999999999999
Q gi|254781086|r    4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il   35 (176)
                      +..+..+.|+++.+.+  .|..+.|-.++.|++|
T Consensus        22 eK~s~yECGf~p~~~~r~~Fsi~fyliailFliF   55 (102)
T pfam00507        22 EKLSPYECGFDPLGKARLPFSLRFFLIAILFLIF   55 (102)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             1078817795998877775358999999999999


No 281
>pfam05957 DUF883 Bacterial protein of unknown function (DUF883). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=22.29  E-value=56  Score=13.60  Aligned_cols=46  Identities=26%  Similarity=0.298  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999
Q gi|254781086|r   69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEK  114 (176)
Q Consensus        69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~  114 (176)
                      ..+...+..+.+.-+..+......-..+++..+....+..+..+..
T Consensus         4 ~~dl~~L~~d~e~Ll~~~~~~~~~~~~~~R~r~~~~l~~ar~~~~~   49 (94)
T pfam05957         4 EDDLRSLLDDLEELLRSAADLAGEEAEELRERAEAALDDARERLGD   49 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999999887640346999999999999999999999


No 282
>TIGR01933 hflK HflK protein; InterPro: IPR010201   The accumulation of abnormal membrane proteins is something which must be avoided in order to maintain cell viability. In Escherichia coli, the membrane-bound, ATP-dependent protease FtsH plays a central role in the degradation of these abnormal proteins . Known substrates of this protease include several lambda bacteriophage proteins, the heat-shock transcription factor sigma-32, and the unassembled form of the membrane protein SecY. While FtsH is active as a protease on its own, in vivo it forms a complex with a membrane-bound HflKC heterodimer. HflKC has a generally inhibitory effect on the protease activity of FtsH, though the mechanism of this inhibition is not known. The HflK and HflC polypeptides are paralogous, and often encoded by tandem genes within bacterial genomes.   This entry represents the HflK subunit of the HflKC heterodimer.; GO: 0005515 protein binding, 0016021 integral to membrane.
Probab=22.25  E-value=56  Score=13.60  Aligned_cols=43  Identities=23%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999
Q gi|254781086|r   65 MDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEF  107 (176)
Q Consensus        65 A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~  107 (176)
                      ...+=+++..+.++-+.-+.+|+..+++++=+|+-+|.+.+++
T Consensus       174 Vk~AFdDvi~A~ed~~r~I~EA~~y~n~~~P~A~G~A~r~~~e  216 (285)
T TIGR01933       174 VKEAFDDVIAAREDEERYINEAEAYANEVVPKARGRAQRIIEE  216 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             1678999998778899999999987603687422765778999


No 283
>pfam10112 Halogen_Hydrol 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.13  E-value=56  Score=13.58  Aligned_cols=23  Identities=13%  Similarity=0.182  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254781086|r   55 RNLISSDQEKMDSAKREVESMIS   77 (176)
Q Consensus        55 ~~~I~~~l~~A~~~~~eae~~~~   77 (176)
                      ...|++.+++|+..-....+...
T Consensus        70 ~~~ir~~L~eA~~ki~~l~k~~~   92 (199)
T pfam10112        70 YKYIRSNLSEAKKKIRRLQKALF   92 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999998


No 284
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=21.68  E-value=57  Score=13.52  Aligned_cols=27  Identities=11%  Similarity=-0.042  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999
Q gi|254781086|r   93 IIDKVVAAAEQNLEFQREVFEKDLLHK  119 (176)
Q Consensus        93 ii~~a~~~a~~~~e~~~~~a~~ei~~~  119 (176)
                      +++.-+++.+.....+...++..+++.
T Consensus        47 ~L~~FKeelE~i~~rW~~dak~KAE~i   73 (144)
T PRK13895         47 ILDAFKEELESIAHRWGDDAKGKAERT   73 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999988867789999999


No 285
>MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=21.63  E-value=58  Score=13.52  Aligned_cols=32  Identities=31%  Similarity=0.668  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             6453346899885988--7688999999999999
Q gi|254781086|r    4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il   35 (176)
                      ...|..+.|+++++.+  -|..+.|-.++.|++|
T Consensus        32 eK~spyECGf~p~~~~r~~Fsi~FyliailFlIF   65 (115)
T MTH00113         32 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLF   65 (115)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             1388707686976777876662999999999999


No 286
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=21.48  E-value=48  Score=13.98  Aligned_cols=45  Identities=18%  Similarity=0.150  Sum_probs=26.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             533468998859887688999999999999999999955408999999999
Q gi|254781086|r    6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRN   56 (176)
Q Consensus         6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~   56 (176)
                      .++...|||..|  ||...-.|..|.-++..-+.++|+-    +++|+|+.
T Consensus       180 ~aA~~~g~~v~~--y~~~~ql~~~i~~~i~~ai~h~f~q----~y~Dkk~~  224 (452)
T PRK10654        180 LAAQASEMPLID--FAFKTTLPISIAAIIGMAIAHFFWQ----RYLDKKEN  224 (452)
T ss_pred             HHHHHCCCCHHH--EEEECCHHHHHHHHHHHHHHHHHHH----HHHCCCCC
T ss_conf             248772998778--0211118999999999999999999----98202136


No 287
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=21.29  E-value=59  Score=13.47  Aligned_cols=20  Identities=20%  Similarity=-0.006  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999955408
Q gi|254781086|r   28 LAIIFGIFYWVTHRFILPRL   47 (176)
Q Consensus        28 ~~I~F~il~~il~~~~~~pi   47 (176)
                      +.+.|+++.+++-+|+-.|-
T Consensus        33 l~~~~~~~~~~~~~FFRdP~   52 (214)
T PRK05305         33 LAIAGLLLTLFCLYFFRDPE   52 (214)
T ss_pred             HHHHHHHHHHHHHHHEECCC
T ss_conf             99999999999998722888


No 288
>pfam11755 DUF3311 Protein of unknown function (DUF3311). This is a family of short bacterial proteins of unknwon function.
Probab=21.21  E-value=59  Score=13.46  Aligned_cols=31  Identities=13%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53346899885988768899999999999999999
Q gi|254781086|r    6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTH   40 (176)
Q Consensus         6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~   40 (176)
                      ....-.|||=    +|.=|+.|++++.++++.+-+
T Consensus        21 ~~P~v~G~Pf----f~~w~~~wv~lts~~~~~~y~   51 (64)
T pfam11755        21 VEPLVLGLPF----FYWWQLLWVVLTSVLTAIVYR   51 (64)
T ss_pred             CCCEECCCCH----HHHHHHHHHHHHHHHHHHHHH
T ss_conf             5872327609----999999999999999999998


No 289
>pfam10104 Brr6_like_C_C Di-sulfide bridge nucleocytoplasmic transport domain. Brr6_like_C_C is the highly conserved C-terminal region of a group of proteins found in fungi. It carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulfide bridges to form a complex which is involved in nucleocytoplasmic transport.
Probab=21.20  E-value=59  Score=13.46  Aligned_cols=25  Identities=24%  Similarity=0.529  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87688999999999999999999955
Q gi|254781086|r   19 STFLSQFFWLAIIFGIFYWVTHRFIL   44 (176)
Q Consensus        19 ~~f~~q~fw~~I~F~il~~il~~~~~   44 (176)
                      +.|+ |+++-++..+++++++..|+.
T Consensus         2 ~~yl-Ql~~N~~~~~~~ly~~~~~~~   26 (135)
T pfam10104         2 SSYL-QLIFNIILVSIILYLVYAFFK   26 (135)
T ss_pred             CHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             4699-999999999999999999999


No 290
>TIGR01495 ETRAMP early transcribed membrane protein (ETRAMP) family; InterPro: IPR006389   These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii . A homolog from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane . Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes..
Probab=21.12  E-value=59  Score=13.45  Aligned_cols=40  Identities=18%  Similarity=0.210  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--------HHHHHHHHHHH
Q ss_conf             999999999999955408999----99999999--------99999999999
Q gi|254781086|r   30 IIFGIFYWVTHRFILPRLSSI----MEVRRNLI--------SSDQEKMDSAK   69 (176)
Q Consensus        30 I~F~il~~il~~~~~~pi~~~----l~~R~~~I--------~~~l~~A~~~~   69 (176)
                      |.|++.+++.-.|+.|-+...    ...|.+.+        -..++.+++-+
T Consensus         6 ilyf~~~l~~~n~i~P~~~~~nv~G~~~~~~~~aeekkrkn~kkl~~~~~~K   57 (99)
T TIGR01495         6 ILYFFAALLAINFIAPGYCNNNVAGKVEKKGKIAEEKKRKNLKKLTKAEKKK   57 (99)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHCCHHCCCCCCHHHHHHHHHCCCCHHHHHH
T ss_conf             9999999999998703001211012001478602455541002421899987


No 291
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=20.89  E-value=46  Score=14.12  Aligned_cols=31  Identities=16%  Similarity=0.446  Sum_probs=18.0

Q ss_pred             CCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHH
Q ss_conf             453346899885988----7688999999999999
Q gi|254781086|r    5 SSSDFSSRFPPFDTS----TFLSQFFWLAIIFGIF   35 (176)
Q Consensus         5 ~~~~~~~gmpqld~~----~f~~q~fw~~I~F~il   35 (176)
                      ..+.-+.||+|....    -|.-+.+-.++.|++|
T Consensus        37 K~spYEcG~~p~~~~~~~~rF~vrfYlvAilFliF   71 (119)
T PRK07928         37 KLEAYECGIEPTPQPAGGQRFPVKYYLTAMLFIVF   71 (119)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH
T ss_conf             58867899897777776662225507799999999


No 292
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812    This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=20.80  E-value=60  Score=13.41  Aligned_cols=28  Identities=29%  Similarity=0.521  Sum_probs=18.6

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999-999995540899999999
Q gi|254781086|r   28 LAIIFGIFYW-VTHRFILPRLSSIMEVRR   55 (176)
Q Consensus        28 ~~I~F~il~~-il~~~~~~pi~~~l~~R~   55 (176)
                      ++++|.+|.. ++++++=||.+-+|..|+
T Consensus        12 l~~~l~~~~~~~~wR~~pp~~s~~M~~~~   40 (228)
T TIGR02070        12 LLLNLAVFALVALWRFVPPPVSAFMVERK   40 (228)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             99999999998887413889886579999


No 293
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.70  E-value=60  Score=13.40  Aligned_cols=17  Identities=29%  Similarity=0.616  Sum_probs=7.4

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             99885988768899999
Q gi|254781086|r   12 RFPPFDTSTFLSQFFWL   28 (176)
Q Consensus        12 gmpqld~~~f~~q~fw~   28 (176)
                      |||+||..+|..---|.
T Consensus        88 ~~PPL~~~~~~rd~~W~  104 (307)
T PRK03564         88 GKPPLDIHVFPRDKHWQ  104 (307)
T ss_pred             CCCCCCHHHCCCCHHHH
T ss_conf             79988834365675899


No 294
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=20.46  E-value=61  Score=13.37  Aligned_cols=44  Identities=5%  Similarity=0.166  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HH--HCCHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999-84--15999999999999942106
Q gi|254781086|r  132 KKASQEVYSIVGEVTKDLVRKL-GF--SVSDADVQKILDRKRDGIDA  175 (176)
Q Consensus       132 ~~a~~ei~~~a~~~a~~i~~kl-~~--~~~~~~~~~~i~~~~~~i~~  175 (176)
                      .....++.+...+++..+++++ ..  ..+.+.+-.+|.+.+..++.
T Consensus       114 ~~~~~~~~~~Ll~La~~vArqVir~El~~~P~~IL~~vreaL~~LP~  160 (236)
T PRK13386        114 AEYEQQQRDELLDLVEKVARQVIRCELTLQPQQILALVEETLAALPD  160 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999997465025989999999999984767


No 295
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=20.42  E-value=61  Score=13.36  Aligned_cols=35  Identities=6%  Similarity=-0.051  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76889999999999999999999554089999999
Q gi|254781086|r   20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR   54 (176)
Q Consensus        20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R   54 (176)
                      +|-.+++|.++.++.++.++..+++|++.+..++-
T Consensus       290 ~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~  324 (709)
T COG2274         290 LYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKL  324 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99889999999999999999999799999999999


No 296
>PRK12488 acetate permease; Provisional
Probab=20.17  E-value=62  Score=13.33  Aligned_cols=11  Identities=27%  Similarity=0.311  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254781086|r  142 VGEVTKDLVRK  152 (176)
Q Consensus       142 a~~~a~~i~~k  152 (176)
                      +..++.++..+
T Consensus       379 ssaishDlY~~  389 (549)
T PRK12488        379 ASAVSHDLYAC  389 (549)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


Done!