Query gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62] Match_columns 176 No_of_seqs 127 out of 1799 Neff 8.1 Searched_HMMs 39220 Date Mon May 30 05:47:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781086.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK13454 F0F1 ATP synthase sub 100.0 2.1E-42 0 281.8 24.3 170 3-172 12-181 (181) 2 PRK09174 F0F1 ATP synthase sub 100.0 4.8E-39 1.2E-43 261.1 24.3 161 10-170 41-202 (204) 3 PRK06569 F0F1 ATP synthase sub 100.0 1E-33 2.6E-38 228.2 22.8 153 13-165 1-154 (157) 4 PRK13455 F0F1 ATP synthase sub 100.0 2.6E-31 6.6E-36 213.3 23.6 169 1-175 10-181 (184) 5 PRK13460 F0F1 ATP synthase sub 100.0 1E-30 2.6E-35 209.7 24.5 165 10-176 6-171 (173) 6 PRK06231 F0F1 ATP synthase sub 100.0 3.8E-30 9.8E-35 206.1 24.7 165 10-174 29-201 (201) 7 PRK07352 F0F1 ATP synthase sub 100.0 1.7E-29 4.4E-34 202.1 24.1 165 6-175 8-173 (174) 8 PRK13453 F0F1 ATP synthase sub 100.0 1.5E-28 3.9E-33 196.2 23.5 156 15-174 15-171 (173) 9 PRK13461 F0F1 ATP synthase sub 100.0 3.9E-28 9.8E-33 193.7 24.6 156 15-174 2-158 (159) 10 PRK05759 F0F1 ATP synthase sub 100.0 4.7E-27 1.2E-31 187.0 24.3 154 15-173 2-156 (156) 11 PRK09173 F0F1 ATP synthase sub 100.0 3.6E-27 9.2E-32 187.7 23.6 151 25-175 4-156 (159) 12 CHL00118 atpG ATP synthase CF0 100.0 1.6E-27 4E-32 189.9 21.7 147 4-155 9-155 (156) 13 CHL00019 atpF ATP synthase CF0 100.0 3.3E-25 8.5E-30 175.6 24.3 164 8-176 15-179 (184) 14 COG0711 AtpF F0F1-type ATP syn 99.9 6.1E-25 1.5E-29 174.0 24.0 151 25-175 9-160 (161) 15 PRK13428 F0F1 ATP synthase sub 99.9 1.5E-24 3.8E-29 171.6 23.1 151 25-175 4-156 (445) 16 PRK08476 F0F1 ATP synthase sub 99.9 1.1E-24 2.8E-29 172.4 21.8 138 13-154 2-139 (141) 17 PRK07353 F0F1 ATP synthase sub 99.9 1.5E-24 3.8E-29 171.5 21.8 139 13-156 1-139 (140) 18 TIGR01144 ATP_synt_b ATP synth 99.9 3.5E-24 8.9E-29 169.3 21.2 145 29-173 2-147 (147) 19 CHL00167 consensus 99.9 5.3E-22 1.3E-26 155.8 24.6 165 6-175 15-180 (182) 20 pfam00430 ATP-synt_B ATP synth 99.9 2.9E-22 7.4E-27 157.4 20.9 131 25-155 2-132 (132) 21 TIGR03321 alt_F1F0_F0_B altern 99.9 1E-21 2.6E-26 154.0 23.6 156 15-174 2-158 (246) 22 PRK06568 F0F1 ATP synthase sub 99.9 1.1E-20 2.7E-25 147.8 20.6 145 20-164 2-148 (154) 23 PRK08475 F0F1 ATP synthase sub 99.8 6.9E-19 1.8E-23 136.6 20.3 140 24-166 26-165 (170) 24 pfam02326 YMF19 Plant ATP synt 99.3 4.3E-12 1.1E-16 94.6 7.5 71 14-86 1-71 (84) 25 PRK06231 F0F1 ATP synthase sub 99.1 8.6E-08 2.2E-12 68.0 20.9 148 12-168 44-199 (201) 26 PRK09173 F0F1 ATP synthase sub 99.0 4.3E-07 1.1E-11 63.7 21.6 149 16-173 1-158 (159) 27 pfam05405 Mt_ATP-synt_B Mitoch 99.0 1.6E-06 4E-11 60.2 21.5 145 26-173 17-162 (163) 28 PRK13453 F0F1 ATP synthase sub 99.0 2.4E-06 6.1E-11 59.1 22.4 140 24-170 24-171 (173) 29 PRK13460 F0F1 ATP synthase sub 98.9 2.1E-06 5.4E-11 59.4 21.2 148 14-170 14-169 (173) 30 PRK07352 F0F1 ATP synthase sub 98.8 5E-06 1.3E-10 57.2 19.6 155 4-169 9-171 (174) 31 PRK13461 F0F1 ATP synthase sub 98.8 2.1E-05 5.3E-10 53.3 21.9 138 24-168 11-156 (159) 32 pfam00430 ATP-synt_B ATP synth 98.6 5.4E-05 1.4E-09 50.7 20.2 124 20-150 1-131 (132) 33 PRK13454 F0F1 ATP synthase sub 98.6 7E-05 1.8E-09 50.1 20.0 157 6-171 12-176 (181) 34 PRK05759 F0F1 ATP synthase sub 98.5 9.5E-05 2.4E-09 49.2 21.8 138 24-168 10-155 (156) 35 CHL00118 atpG ATP synthase CF0 98.5 7.7E-05 2E-09 49.8 18.8 116 26-149 23-138 (156) 36 PRK13455 F0F1 ATP synthase sub 98.5 0.00012 3.1E-09 48.6 20.8 137 30-173 38-183 (184) 37 PRK09174 F0F1 ATP synthase sub 98.4 0.00018 4.7E-09 47.5 21.0 150 14-172 42-200 (204) 38 CHL00019 atpF ATP synthase CF0 98.3 0.00028 7E-09 46.4 20.0 134 29-169 35-176 (184) 39 PRK08475 F0F1 ATP synthase sub 98.3 0.00018 4.6E-09 47.5 17.2 108 21-128 27-141 (170) 40 TIGR01144 ATP_synt_b ATP synth 98.3 0.00031 8E-09 46.0 19.7 137 24-168 1-146 (147) 41 PRK08476 F0F1 ATP synthase sub 98.3 0.00035 8.9E-09 45.8 19.8 86 64-153 42-127 (141) 42 MTH00169 ATP8 ATP synthase F0 98.3 2.8E-06 7.2E-11 58.7 6.8 50 13-62 1-50 (71) 43 PRK06568 F0F1 ATP synthase sub 98.2 0.00046 1.2E-08 45.0 20.3 117 13-131 1-124 (154) 44 COG0711 AtpF F0F1-type ATP syn 98.2 0.0007 1.8E-08 43.9 21.3 147 15-168 3-157 (161) 45 PRK07353 F0F1 ATP synthase sub 98.1 0.001 2.6E-08 42.8 20.8 120 24-150 11-137 (140) 46 MTH00025 ATP8 ATP synthase F0 98.0 2E-05 5E-10 53.4 5.9 49 13-61 1-49 (70) 47 CHL00167 consensus 97.8 0.0036 9.1E-08 39.5 19.8 132 29-167 37-176 (182) 48 PRK06569 F0F1 ATP synthase sub 97.7 0.0041 1.1E-07 39.1 18.9 133 26-166 8-142 (157) 49 PRK01005 V-type ATP synthase s 97.7 0.0049 1.3E-07 38.6 15.8 102 69-174 19-123 (208) 50 PRK02292 V-type ATP synthase s 97.6 0.0064 1.6E-07 37.9 15.9 99 74-173 13-112 (187) 51 PRK01005 V-type ATP synthase s 97.5 0.006 1.5E-07 38.1 13.2 52 76-127 37-88 (208) 52 PRK01558 V-type ATP synthase s 97.4 0.011 2.7E-07 36.6 16.1 100 69-172 14-114 (198) 53 pfam05933 Fun_ATP-synt_8 Funga 97.3 0.00024 6.2E-09 46.7 3.9 43 13-55 1-43 (47) 54 TIGR03321 alt_F1F0_F0_B altern 97.3 0.015 3.9E-07 35.6 19.9 96 29-124 16-122 (246) 55 PRK13428 F0F1 ATP synthase sub 97.2 0.018 4.6E-07 35.2 20.3 143 19-168 2-153 (445) 56 PRK03963 V-type ATP synthase s 96.7 0.052 1.3E-06 32.3 15.4 51 75-125 15-65 (198) 57 PRK01558 V-type ATP synthase s 96.7 0.054 1.4E-06 32.2 13.3 53 76-128 32-84 (198) 58 PRK02292 V-type ATP synthase s 96.7 0.054 1.4E-06 32.2 13.2 76 78-153 28-108 (187) 59 PRK00106 hypothetical protein; 96.7 0.055 1.4E-06 32.2 20.2 85 23-115 6-91 (535) 60 PRK00409 recombination and DNA 96.5 0.067 1.7E-06 31.6 15.8 70 51-120 523-592 (780) 61 PRK12705 hypothetical protein; 96.5 0.067 1.7E-06 31.6 22.2 61 13-73 1-63 (485) 62 PRK06328 type III secretion sy 96.5 0.068 1.7E-06 31.6 16.0 101 74-174 26-129 (223) 63 KOG3976 consensus 96.5 0.069 1.8E-06 31.6 20.5 77 28-104 100-176 (247) 64 PRK03963 V-type ATP synthase s 96.4 0.076 1.9E-06 31.3 13.1 51 81-131 10-60 (198) 65 TIGR02926 AhaH ATP synthase ar 96.4 0.083 2.1E-06 31.1 12.0 76 72-147 4-79 (85) 66 PRK00409 recombination and DNA 96.4 0.086 2.2E-06 31.0 13.1 121 10-132 462-589 (780) 67 COG2811 NtpF Archaeal/vacuolar 96.3 0.096 2.4E-06 30.7 15.2 73 74-146 14-86 (108) 68 pfam03179 V-ATPase_G Vacuolar 96.2 0.1 2.7E-06 30.4 12.0 54 82-135 8-61 (105) 69 COG2811 NtpF Archaeal/vacuolar 96.0 0.13 3.4E-06 29.8 14.4 80 68-147 19-103 (108) 70 pfam01991 vATP-synt_E ATP synt 95.7 0.17 4.4E-06 29.1 12.9 40 78-117 9-48 (195) 71 TIGR02926 AhaH ATP synthase ar 95.7 0.17 4.4E-06 29.1 9.5 69 68-136 11-83 (85) 72 TIGR01147 V_ATP_synt_G V-type 95.3 0.24 6.1E-06 28.2 11.6 91 81-171 10-102 (114) 73 PRK08404 V-type ATP synthase s 95.1 0.28 7E-06 27.8 14.7 66 75-140 25-94 (106) 74 PRK06937 type III secretion sy 95.1 0.28 7.2E-06 27.8 15.9 100 76-175 29-129 (204) 75 COG1390 NtpE Archaeal/vacuolar 95.0 0.3 7.6E-06 27.6 15.1 97 76-172 16-116 (194) 76 KOG1772 consensus 94.7 0.36 9.2E-06 27.1 12.3 48 82-129 10-57 (108) 77 pfam00895 ATP-synt_8 ATP synth 94.2 0.049 1.2E-06 32.5 3.3 20 13-32 1-20 (55) 78 PRK08404 V-type ATP synthase s 94.2 0.46 1.2E-05 26.5 13.5 67 75-141 14-80 (106) 79 PRK01194 V-type ATP synthase s 94.1 0.48 1.2E-05 26.4 15.9 98 76-173 15-117 (185) 80 PRK00083 frr ribosome recyclin 93.8 0.32 8.1E-06 27.5 6.9 83 41-126 99-181 (185) 81 cd00520 RRF Ribosome recycling 93.2 0.49 1.2E-05 26.3 7.0 83 41-126 95-177 (179) 82 COG1390 NtpE Archaeal/vacuolar 93.0 0.74 1.9E-05 25.2 14.8 56 82-137 11-66 (194) 83 MTH00102 ATP8 ATP synthase F0 92.8 0.1 2.6E-06 30.5 3.0 23 13-35 1-23 (67) 84 KOG0718 consensus 92.6 0.84 2.1E-05 24.9 9.5 39 16-54 368-406 (546) 85 PRK09098 type III secretion sy 92.1 0.96 2.5E-05 24.5 17.5 97 72-168 34-142 (229) 86 PRK06669 fliH flagellar assemb 92.0 0.99 2.5E-05 24.4 17.8 107 69-175 83-196 (268) 87 TIGR02499 HrpE_YscL_not type I 91.2 1.2 3.1E-05 23.9 15.9 97 77-173 17-120 (183) 88 COG0233 Frr Ribosome recycling 91.1 1.2 3.1E-05 23.9 8.3 84 41-127 101-184 (187) 89 pfam06936 Selenoprotein_S Sele 91.0 1.2 3.2E-05 23.8 10.1 28 20-47 31-58 (190) 90 COG1862 YajC Preprotein transl 90.9 0.47 1.2E-05 26.4 4.7 35 21-59 8-42 (97) 91 MTH00036 ATP8 ATP synthase F0 89.9 0.39 9.8E-06 26.9 3.5 13 13-25 1-13 (53) 92 TIGR01846 type_I_sec_HlyB type 89.9 0.47 1.2E-05 26.4 3.9 37 20-56 282-318 (703) 93 TIGR02956 TMAO_torS TMAO reduc 89.6 1.6 4.2E-05 23.1 17.5 95 25-119 374-484 (1052) 94 TIGR03319 YmdA_YtgF conserved 89.2 1.8 4.5E-05 22.9 23.7 43 25-67 5-47 (514) 95 TIGR00739 yajC preprotein tran 88.7 0.53 1.3E-05 26.1 3.5 22 21-42 2-23 (86) 96 pfam06188 HrpE HrpE protein. T 88.4 2 5.1E-05 22.5 15.9 95 76-170 29-124 (191) 97 MTH00133 ATP8 ATP synthase F0 88.1 0.53 1.4E-05 26.1 3.2 10 13-22 1-10 (55) 98 pfam06103 DUF948 Bacterial pro 87.7 2.2 5.6E-05 22.3 10.9 65 27-92 5-69 (90) 99 MTH00171 ATP8 ATP synthase F0 87.5 0.55 1.4E-05 26.0 3.0 11 13-23 1-11 (54) 100 PRK05585 yajC preprotein trans 87.3 1.4 3.5E-05 23.5 4.9 31 23-57 20-50 (107) 101 MTH00123 ATP8 ATP synthase F0 86.7 0.57 1.5E-05 25.9 2.7 13 13-25 1-13 (55) 102 MTH00122 consensus 86.7 0.54 1.4E-05 26.0 2.6 10 13-22 1-10 (55) 103 MTH00072 ATP8 ATP synthase F0 86.6 0.79 2E-05 25.0 3.3 10 13-22 1-10 (55) 104 pfam01765 RRF Ribosome recycli 85.9 2.8 7E-05 21.7 8.8 83 41-126 81-163 (165) 105 pfam05103 DivIVA DivIVA protei 83.8 3.4 8.7E-05 21.1 14.9 70 56-129 42-111 (131) 106 TIGR03142 cytochro_ccmI cytoch 83.6 3.5 8.9E-05 21.0 6.1 53 25-91 1-53 (117) 107 pfam04100 Vps53_N Vps53-like, 83.2 3.6 9.2E-05 20.9 14.9 89 13-111 1-93 (375) 108 KOG2302 consensus 82.1 4 0.0001 20.7 8.8 55 27-87 1360-1419(1956) 109 pfam02699 YajC Preprotein tran 81.7 2.4 6.2E-05 22.0 4.1 20 22-41 3-22 (83) 110 pfam01972 SDH_sah Serine dehyd 80.1 4.7 0.00012 20.3 6.1 48 14-68 2-50 (286) 111 TIGR00496 frr ribosome recycli 80.0 1.4 3.5E-05 23.6 2.4 83 41-126 91-173 (177) 112 COG1317 FliH Flagellar biosynt 78.5 5.3 0.00013 19.9 17.8 64 112-176 93-156 (234) 113 PRK05183 hscA chaperone protei 78.2 5.4 0.00014 19.9 9.9 69 55-128 511-579 (621) 114 pfam10961 DUF2763 Protein of u 77.5 2.3 5.9E-05 22.2 2.9 23 16-39 16-38 (91) 115 MTH00158 ATP8 ATP synthase F0 77.5 3.6 9.2E-05 20.9 3.9 33 13-46 1-33 (52) 116 pfam12128 DUF3584 Protein of u 77.3 5.7 0.00015 19.7 15.4 47 47-93 599-645 (1192) 117 COG1766 fliF Flagellar basal b 76.7 5.4 0.00014 19.9 4.6 49 5-55 425-473 (545) 118 PRK00247 putative inner membra 76.3 6.1 0.00015 19.6 8.8 43 84-131 323-365 (422) 119 COG3190 FliO Flagellar biogene 75.6 4.4 0.00011 20.4 3.9 40 7-47 14-53 (137) 120 COG3462 Predicted membrane pro 74.5 5.5 0.00014 19.8 4.2 18 16-33 46-63 (117) 121 TIGR01069 mutS2 MutS2 family p 73.2 7.3 0.00019 19.1 12.6 136 15-151 501-644 (834) 122 PRK11267 biopolymer transport 72.2 3.5 9E-05 21.0 2.7 35 1-35 3-37 (141) 123 PRK13953 mscL large-conductanc 71.7 6.5 0.00017 19.4 4.0 32 23-55 67-98 (127) 124 PRK08024 consensus 70.8 8.2 0.00021 18.7 6.7 68 11-78 2-81 (306) 125 pfam05680 ATP-synt_E ATP synth 70.3 8.5 0.00022 18.7 8.3 30 13-42 1-30 (81) 126 PRK01433 hscA chaperone protei 69.9 8.6 0.00022 18.6 12.1 71 55-130 484-554 (595) 127 pfam04612 GspM General secreti 69.2 8.9 0.00023 18.5 8.7 52 24-75 16-67 (159) 128 TIGR02002 PTS-II-BC-glcB PTS s 68.6 4 0.0001 20.6 2.4 20 34-53 191-210 (518) 129 PRK13952 mscL large-conductanc 68.3 9 0.00023 18.5 4.1 35 11-50 77-111 (143) 130 PRK09702 arbutin specific enzy 67.2 9.5 0.00024 18.4 4.0 28 18-45 6-37 (161) 131 KOG4759 consensus 66.9 10 0.00025 18.2 8.9 57 72-131 197-253 (263) 132 MTH00186 ATP8 ATP synthase F0 66.8 6 0.00015 19.6 3.0 10 13-22 1-10 (51) 133 COG4741 Predicted secreted end 66.6 10 0.00026 18.2 13.5 22 44-65 24-45 (175) 134 pfam12072 DUF3552 Domain of un 66.3 10 0.00026 18.2 23.7 37 25-61 7-43 (201) 135 COG3524 KpsE Capsule polysacch 65.9 5.5 0.00014 19.8 2.6 19 22-40 19-37 (372) 136 PRK11466 hybrid sensory histid 64.2 11 0.00029 17.9 14.8 33 28-60 337-369 (912) 137 PRK00290 dnaK molecular chaper 63.6 12 0.00029 17.8 12.5 94 55-153 504-601 (631) 138 PRK04778 septation ring format 62.9 12 0.0003 17.8 17.7 32 36-68 20-56 (569) 139 COG4736 CcoQ Cbb3-type cytochr 62.8 8 0.0002 18.8 3.0 24 26-49 12-35 (60) 140 PRK00567 mscL large-conductanc 62.6 11 0.00028 18.0 3.7 31 15-50 70-100 (134) 141 COG4023 SBH1 Preprotein transl 62.6 9.4 0.00024 18.4 3.3 34 8-46 24-57 (57) 142 PRK06531 yajC preprotein trans 62.1 12 0.00031 17.7 4.1 17 41-57 17-33 (120) 143 PRK10361 DNA recombination pro 61.9 12 0.00031 17.7 21.4 12 17-28 2-13 (475) 144 PRK00888 ftsB cell division pr 61.6 13 0.00032 17.6 8.7 19 27-45 3-22 (105) 145 pfam06635 NolV Nodulation prot 61.4 13 0.00032 17.6 15.1 85 84-172 37-126 (207) 146 KOG1962 consensus 60.7 13 0.00033 17.5 13.2 27 30-56 103-129 (216) 147 pfam09851 DUF2078 Predicted me 59.8 13 0.00034 17.4 5.4 23 20-42 9-31 (73) 148 KOG2629 consensus 58.9 14 0.00036 17.3 15.0 71 9-82 64-144 (300) 149 cd00922 Cyt_c_Oxidase_IV Cytoc 58.7 3.6 9.3E-05 20.9 0.7 49 5-53 59-109 (136) 150 MTH00147 ATP8 ATP synthase F0 56.9 10 0.00026 18.1 2.7 10 13-22 1-10 (51) 151 PRK11677 cytochrome d ubiquino 56.4 15 0.00039 17.1 11.4 75 20-107 2-76 (134) 152 KOG0206 consensus 55.9 16 0.0004 17.0 3.7 33 20-52 1046-1078(1151) 153 PRK13954 mscL large-conductanc 54.9 14 0.00036 17.3 3.2 28 23-51 64-91 (120) 154 KOG2927 consensus 54.7 7 0.00018 19.2 1.6 31 18-48 229-263 (372) 155 COG2825 HlpA Outer membrane pr 53.4 17 0.00044 16.8 14.9 36 116-151 102-137 (170) 156 pfam11044 TMEMspv1-c74-12 Plec 53.3 17 0.00044 16.8 4.1 34 20-54 3-36 (49) 157 COG4768 Uncharacterized protei 52.9 17 0.00044 16.7 18.3 98 27-127 10-107 (139) 158 PRK11091 aerobic respiration c 52.8 18 0.00045 16.7 16.7 81 43-129 72-152 (779) 159 TIGR01652 ATPase-Plipid phosph 52.6 18 0.00045 16.7 4.5 42 12-53 1200-1241(1249) 160 pfam05545 FixQ Cbb3-type cytoc 50.8 19 0.00048 16.5 3.8 27 23-49 10-36 (49) 161 pfam06160 EzrA Septation ring 50.6 19 0.00048 16.5 16.9 31 27-59 8-38 (559) 162 PRK05886 yajC preprotein trans 49.9 20 0.0005 16.4 4.8 14 28-41 10-23 (108) 163 COG4046 Uncharacterized protei 49.7 20 0.0005 16.4 6.1 27 57-83 44-70 (368) 164 COG3224 Uncharacterized protei 49.6 19 0.00049 16.5 3.1 30 23-52 149-178 (195) 165 KOG4403 consensus 49.5 20 0.0005 16.4 13.5 71 12-89 204-274 (575) 166 TIGR01932 hflC HflC protein; I 49.4 20 0.00051 16.4 7.4 62 80-141 237-298 (345) 167 TIGR00659 TIGR00659 conserved 49.4 12 0.00031 17.7 2.1 43 3-57 133-175 (227) 168 PRK12704 phosphodiesterase; Pr 49.3 20 0.00051 16.4 16.0 19 86-104 64-82 (455) 169 PRK09731 putative general secr 48.5 21 0.00052 16.3 7.8 58 18-76 21-89 (178) 170 KOG4503 consensus 48.0 21 0.00053 16.2 7.5 47 18-65 82-131 (230) 171 COG5085 Predicted membrane pro 48.0 21 0.00053 16.2 7.5 47 18-65 82-131 (230) 172 CHL00094 dnaK heat shock prote 47.7 21 0.00054 16.2 12.1 93 55-152 504-600 (622) 173 pfam01442 Apolipoprotein Apoli 47.3 21 0.00055 16.2 19.7 82 45-126 30-112 (191) 174 COG0772 FtsW Bacterial cell di 46.3 22 0.00056 16.1 4.3 28 17-44 46-73 (381) 175 pfam07431 DUF1512 Protein of u 45.9 22 0.00057 16.0 8.1 50 25-82 7-56 (356) 176 pfam03245 Phage_lysis Bacterio 45.0 23 0.00059 16.0 11.7 22 74-95 61-82 (151) 177 pfam02472 ExbD Biopolymer tran 44.5 20 0.00052 16.3 2.6 26 10-35 2-27 (128) 178 PRK10633 hypothetical protein; 44.4 24 0.0006 15.9 4.1 38 8-47 34-72 (80) 179 pfam07798 DUF1640 Protein of u 44.1 24 0.00061 15.9 16.0 60 80-139 64-123 (177) 180 KOG3970 consensus 43.8 24 0.00062 15.8 3.3 29 9-42 241-269 (299) 181 pfam02936 COX4 Cytochrome c ox 43.6 18 0.00047 16.6 2.3 30 24-53 80-109 (143) 182 pfam03938 OmpH Outer membrane 43.5 25 0.00063 15.8 15.5 45 108-152 83-127 (157) 183 COG3924 Predicted membrane pro 43.4 25 0.00063 15.8 4.6 43 4-47 30-72 (80) 184 COG4942 Membrane-bound metallo 43.4 25 0.00063 15.8 15.5 58 44-101 29-86 (420) 185 pfam11027 DUF2615 Protein of u 43.1 25 0.00063 15.8 3.2 16 19-34 54-69 (103) 186 PRK13955 mscL large-conductanc 42.9 25 0.00064 15.8 4.6 32 22-54 66-97 (130) 187 COG3031 PulC Type II secretory 42.5 25 0.00065 15.7 4.1 19 13-31 1-19 (275) 188 TIGR00782 ccoP cytochrome c ox 42.1 26 0.00066 15.7 4.7 60 18-78 27-91 (303) 189 TIGR02390 RNA_pol_rpoA1 DNA-di 41.9 26 0.00066 15.7 6.4 50 99-148 683-745 (901) 190 pfam05137 PilN Fimbrial assemb 41.0 27 0.00068 15.6 10.4 12 32-43 28-39 (162) 191 cd03404 Band_7_HflK Band_7_Hfl 40.5 27 0.00069 15.5 10.1 29 99-127 197-225 (266) 192 pfam05992 SbmA_BacA SbmA/BacA- 40.4 27 0.0007 15.5 5.8 52 10-63 148-201 (315) 193 TIGR02210 rodA_shape rod shape 40.3 27 0.0007 15.5 3.5 22 18-39 32-53 (416) 194 TIGR00867 deg-1 degenerin; Int 40.3 27 0.0007 15.5 3.5 42 11-53 9-51 (757) 195 PRK13411 molecular chaperone D 39.4 28 0.00072 15.4 13.2 93 55-152 504-602 (655) 196 TIGR02978 phageshock_pspC phag 39.2 29 0.00073 15.4 3.7 33 55-87 78-111 (128) 197 pfam01741 MscL Large-conductan 39.0 29 0.00073 15.4 4.2 27 23-50 71-97 (127) 198 pfam04387 PTPLA Protein tyrosi 38.5 29 0.00075 15.3 4.4 45 9-59 113-158 (161) 199 pfam06459 RR_TM4-6 Ryanodine R 38.1 30 0.00076 15.3 2.7 17 22-38 130-146 (217) 200 TIGR02207 lipid_A_htrB lipid A 38.1 30 0.00076 15.3 5.6 60 16-78 8-79 (308) 201 COG1459 PulF Type II secretory 37.7 30 0.00077 15.2 5.2 30 17-46 208-237 (397) 202 pfam03967 PRCH Photosynthetic 37.6 30 0.00077 15.2 3.3 25 15-41 8-32 (135) 203 KOG2180 consensus 37.4 31 0.00078 15.2 10.7 89 14-112 17-109 (793) 204 PRK06602 NADH dehydrogenase su 37.0 31 0.00079 15.2 2.6 31 5-35 41-73 (121) 205 PRK10774 cell division protein 36.9 31 0.00079 15.2 2.8 25 15-39 66-91 (405) 206 TIGR01400 fliR flagellar biosy 35.9 32 0.00082 15.1 5.3 29 13-42 201-229 (248) 207 pfam07850 Renin_r Renin recept 35.8 32 0.00082 15.1 3.5 30 16-45 49-78 (98) 208 pfam03606 DcuC C4-dicarboxylat 35.6 33 0.00083 15.0 5.0 45 8-58 182-226 (456) 209 TIGR02208 lipid_A_msbB lipid A 35.4 16 0.0004 17.0 0.9 35 16-53 10-44 (307) 210 PRK06771 hypothetical protein; 35.2 33 0.00084 15.0 4.3 12 26-37 3-14 (93) 211 PRK10930 FtsH protease regulat 35.2 33 0.00084 15.0 12.2 43 65-107 247-289 (419) 212 PRK06397 V-type ATP synthase s 35.2 33 0.00084 15.0 14.6 42 74-115 28-69 (111) 213 TIGR02108 PQQ_syn_pqqB coenzym 35.0 17 0.00043 16.8 1.0 23 6-28 6-28 (314) 214 KOG4812 consensus 34.7 34 0.00086 15.0 3.8 25 25-49 225-249 (262) 215 TIGR01401 fliR_like_III type I 34.6 34 0.00086 14.9 4.7 32 14-46 215-246 (262) 216 pfam06196 DUF997 Protein of un 34.4 34 0.00087 14.9 3.9 32 15-47 36-67 (75) 217 pfam08269 Cache_2 Cache domain 33.9 35 0.00088 14.9 4.9 23 49-71 3-25 (95) 218 PRK06860 lipid A biosynthesis 33.7 35 0.00089 14.9 6.8 67 12-78 5-83 (309) 219 COG3058 FdhE Uncharacterized p 33.6 35 0.00089 14.8 4.1 18 12-29 87-104 (308) 220 COG3599 DivIVA Cell division i 33.0 36 0.00091 14.8 19.0 93 48-140 46-160 (212) 221 TIGR02121 Na_Pro_sym sodium/pr 32.8 35 0.00088 14.9 2.3 51 5-58 49-105 (517) 222 pfam07464 ApoLp-III Apolipopho 32.4 37 0.00094 14.7 16.5 10 163-172 142-151 (166) 223 pfam02108 FliH Flagellar assem 31.7 38 0.00096 14.7 9.6 60 114-174 5-64 (128) 224 pfam06898 YqfD Putative stage 31.0 32 0.00081 15.1 1.9 37 9-45 73-110 (383) 225 pfam05814 DUF843 Baculovirus p 30.8 39 0.001 14.6 3.2 26 22-47 24-49 (83) 226 pfam06295 DUF1043 Protein of u 30.4 40 0.001 14.5 11.8 71 25-108 3-73 (128) 227 KOG3054 consensus 29.8 41 0.001 14.5 3.3 22 24-45 3-24 (299) 228 TIGR00785 dass transporter, di 29.4 41 0.0011 14.4 2.6 38 29-66 222-259 (473) 229 TIGR02832 spo_yunB sporulation 29.3 41 0.0011 14.4 6.1 37 22-58 8-44 (220) 230 PRK10588 hypothetical protein; 29.1 42 0.0011 14.4 3.7 31 12-43 65-96 (97) 231 COG2364 Predicted membrane pro 29.0 41 0.001 14.4 2.1 29 17-45 99-127 (210) 232 PRK10132 hypothetical protein; 28.4 43 0.0011 14.3 8.0 50 64-113 13-62 (108) 233 pfam07406 NICE-3 NICE-3 protei 28.1 15 0.00039 17.1 -0.2 32 10-41 2-33 (186) 234 COG4477 EzrA Negative regulato 28.0 44 0.0011 14.3 15.8 99 29-128 12-132 (570) 235 TIGR00779 cad cadmium resistan 28.0 44 0.0011 14.3 4.5 43 3-45 109-151 (196) 236 COG4239 ABC-type uncharacteriz 27.5 34 0.00086 15.0 1.5 32 6-37 179-215 (341) 237 PRK11029 FtsH protease regulat 27.5 45 0.0011 14.2 10.5 52 84-135 225-276 (334) 238 pfam05568 ASFV_J13L African sw 27.4 45 0.0011 14.2 5.1 43 16-63 22-64 (189) 239 PRK10573 type IV pilin biogene 27.2 45 0.0011 14.2 3.6 28 17-44 208-235 (397) 240 KOG4610 consensus 26.9 46 0.0012 14.1 3.5 34 9-46 137-183 (328) 241 MTH00170 ATP8 ATP synthase F0 26.9 46 0.0012 14.1 3.1 16 13-28 1-18 (53) 242 COG3541 Predicted nucleotidylt 26.8 34 0.00087 14.9 1.4 16 9-24 156-171 (248) 243 MTH00012 ND3 NADH dehydrogenas 26.7 46 0.0012 14.1 2.1 31 5-35 35-67 (117) 244 pfam10523 BEN BEN domain. The 26.6 46 0.0012 14.1 3.7 40 8-52 29-68 (78) 245 pfam06305 DUF1049 Protein of u 26.4 47 0.0012 14.1 5.9 28 20-47 28-55 (80) 246 TIGR00819 ydaH AbgT transporte 26.4 47 0.0012 14.1 4.2 53 15-67 305-357 (527) 247 smart00030 CLb CLUSTERIN Beta 26.3 47 0.0012 14.1 7.9 54 44-97 31-87 (206) 248 PRK11560 phosphoethanolamine t 26.0 47 0.0012 14.0 4.2 14 38-51 68-81 (556) 249 MTH00161 ND3 NADH dehydrogenas 25.9 48 0.0012 14.0 2.3 31 5-35 33-65 (113) 250 TIGR01497 kdpB K+-transporting 25.6 48 0.0012 14.0 3.3 25 7-36 51-75 (675) 251 pfam05337 CSF-1 Macrophage col 25.3 49 0.0012 14.0 2.0 30 3-38 211-240 (285) 252 pfam03279 Lip_A_acyltrans Bact 25.2 49 0.0012 14.0 6.6 66 13-78 1-78 (295) 253 COG3952 Predicted membrane pro 25.1 49 0.0013 13.9 3.2 32 16-47 15-46 (113) 254 PTZ00234 variable surface prot 24.8 34 0.00087 14.9 1.1 41 15-56 358-398 (433) 255 pfam06212 GRIM-19 GRIM-19 prot 24.7 50 0.0013 13.9 6.6 34 8-41 10-48 (130) 256 COG3167 PilO Tfp pilus assembl 24.7 50 0.0013 13.9 10.5 56 16-85 14-71 (211) 257 TIGR02350 prok_dnaK chaperone 24.7 50 0.0013 13.9 12.1 70 55-129 502-571 (598) 258 MTH00106 ND3 NADH dehydrogenas 24.6 49 0.0013 13.9 1.9 32 4-35 32-65 (115) 259 PTZ00186 heat shock 70 kDa pre 24.6 50 0.0013 13.9 12.7 93 55-153 529-627 (657) 260 pfam11696 DUF3292 Protein of u 24.1 51 0.0013 13.8 2.8 34 16-50 129-162 (641) 261 TIGR02759 TraD_Ftype type IV c 24.1 51 0.0013 13.8 3.0 21 26-46 24-44 (613) 262 TIGR02282 MltB lytic murein tr 24.0 31 0.0008 15.1 0.8 10 12-21 176-185 (323) 263 pfam01098 FTSW_RODA_SPOVE Cell 24.0 52 0.0013 13.8 2.8 21 19-39 36-56 (356) 264 cd03514 CrtR_beta-carotene-hyd 23.8 52 0.0013 13.8 4.5 30 11-40 86-115 (207) 265 KOG3807 consensus 23.8 52 0.0013 13.8 3.8 11 9-19 5-15 (556) 266 COG1970 MscL Large-conductance 23.8 52 0.0013 13.8 4.5 28 25-53 73-100 (130) 267 PRK10697 DNA-binding transcrip 23.6 53 0.0013 13.8 5.0 13 17-29 31-43 (119) 268 cd00226 PRCH Photosynthetic re 23.3 53 0.0014 13.7 3.0 25 15-41 9-33 (246) 269 PRK11465 hypothetical protein; 23.2 54 0.0014 13.7 5.3 37 9-45 122-161 (741) 270 PRK10144 formate-dependent nit 23.2 54 0.0014 13.7 3.5 10 13-22 94-103 (126) 271 COG1684 FliR Flagellar biosynt 23.1 54 0.0014 13.7 6.6 29 12-41 206-234 (258) 272 TIGR02214 spoVD_pbp stage V sp 23.1 44 0.0011 14.2 1.4 30 26-55 3-35 (660) 273 MTH00101 ATP6 ATP synthase F0 23.1 54 0.0014 13.7 5.3 50 14-63 7-58 (226) 274 COG3088 CcmH Uncharacterized p 23.1 54 0.0014 13.7 3.5 19 14-35 99-117 (153) 275 pfam11119 DUF2633 Protein of u 23.0 54 0.0014 13.7 4.0 19 27-45 13-31 (59) 276 PRK11089 glucose-specific PTS 22.9 44 0.0011 14.2 1.4 18 27-44 355-372 (477) 277 COG4327 Predicted membrane pro 22.9 54 0.0014 13.7 2.5 14 24-37 25-38 (101) 278 MTH00202 ND3 NADH dehydrogenas 22.9 54 0.0014 13.7 2.2 32 4-35 32-65 (114) 279 KOG2264 consensus 22.5 55 0.0014 13.6 13.6 27 10-37 15-42 (907) 280 pfam00507 Oxidored_q4 NADH-ubi 22.3 56 0.0014 13.6 2.6 32 4-35 22-55 (102) 281 pfam05957 DUF883 Bacterial pro 22.3 56 0.0014 13.6 10.1 46 69-114 4-49 (94) 282 TIGR01933 hflK HflK protein; I 22.3 56 0.0014 13.6 5.3 43 65-107 174-216 (285) 283 pfam10112 Halogen_Hydrol 5-bro 22.1 56 0.0014 13.6 17.0 23 55-77 70-92 (199) 284 PRK13895 conjugal transfer pro 21.7 57 0.0015 13.5 12.0 27 93-119 47-73 (144) 285 MTH00113 ND3 NADH dehydrogenas 21.6 58 0.0015 13.5 2.4 32 4-35 32-65 (115) 286 PRK10654 dcuC C4-dicarboxylate 21.5 48 0.0012 14.0 1.3 45 6-56 180-224 (452) 287 PRK05305 phosphatidylserine de 21.3 59 0.0015 13.5 3.0 20 28-47 33-52 (214) 288 pfam11755 DUF3311 Protein of u 21.2 59 0.0015 13.5 3.0 31 6-40 21-51 (64) 289 pfam10104 Brr6_like_C_C Di-sul 21.2 59 0.0015 13.5 7.3 25 19-44 2-26 (135) 290 TIGR01495 ETRAMP early transcr 21.1 59 0.0015 13.5 1.8 40 30-69 6-57 (99) 291 PRK07928 NADH dehydrogenase su 20.9 46 0.0012 14.1 1.1 31 5-35 37-71 (119) 292 TIGR02070 mono_pep_trsgly mono 20.8 60 0.0015 13.4 2.7 28 28-55 12-40 (228) 293 PRK03564 formate dehydrogenase 20.7 60 0.0015 13.4 3.9 17 12-28 88-104 (307) 294 PRK13386 fliH flagellar assemb 20.5 61 0.0016 13.4 12.8 44 132-175 114-160 (236) 295 COG2274 SunT ABC-type bacterio 20.4 61 0.0016 13.4 11.8 35 20-54 290-324 (709) 296 PRK12488 acetate permease; Pro 20.2 62 0.0016 13.3 2.5 11 142-152 379-389 (549) No 1 >PRK13454 F0F1 ATP synthase subunit B'; Provisional Probab=100.00 E-value=2.1e-42 Score=281.79 Aligned_cols=170 Identities=23% Similarity=0.416 Sum_probs=165.5 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 56453346899885988768899999999999999999995540899999999999999999999999999999999999 Q gi|254781086|r 3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEES 82 (176) Q Consensus 3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~ 82 (176) ++.+++++||||||||+||+||+||++|+|++||++++||+||||.++|++|++.|.++|+.|++++.+++.+.++|+.. T Consensus 12 ~~~~~~~~~GmPQld~~~f~sQiFWl~i~F~ily~vl~k~~lPrI~~vLe~R~~~I~~dL~~Ae~~k~eAe~~~~~ye~~ 91 (181) T PRK13454 12 AADAAASAPGMPQLDFDTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKA 91 (181) T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 76503457999999902407899999999999999999999988898999999999988999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999841599999 Q gi|254781086|r 83 LAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADV 162 (176) Q Consensus 83 l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~ 162 (176) |.+||.++..++.+++.+++...+..+.+++.+++.++.+++.+|+..|..++.+|++++.+++..++++|+++++++.+ T Consensus 92 L~~Ar~eA~~ii~eAr~~a~~~~~~~~~~a~~el~~~i~~AE~~I~~~K~~Am~~i~~iA~d~a~~Iv~kL~gk~~~~~v 171 (181) T PRK13454 92 LADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAALGGKADAAAV 171 (181) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 99999999999999999999999999999999999999999999999999889999999999999999998575877889 Q ss_pred HHHHHHHHHH Q ss_conf 9999999942 Q gi|254781086|r 163 QKILDRKRDG 172 (176) Q Consensus 163 ~~~i~~~~~~ 172 (176) .+.|++.++| T Consensus 172 ~aaV~~~~k~ 181 (181) T PRK13454 172 DAAVAQRMKG 181 (181) T ss_pred HHHHHHHHCC T ss_conf 9999987477 No 2 >PRK09174 F0F1 ATP synthase subunit B'; Validated Probab=100.00 E-value=4.8e-39 Score=261.08 Aligned_cols=161 Identities=37% Similarity=0.600 Sum_probs=156.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68998859887688999999999999999999955408999999999999999999999999999999999999999999 Q gi|254781086|r 10 SSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAH 89 (176) Q Consensus 10 ~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~e 89 (176) +||||||||+||+||+||++|+|++|||+++||++|+|.++|++|++.|.++|+.|++++.+++..+++|+..|.+||.+ T Consensus 41 ~gg~Pqld~~t~~sQifWL~I~F~~lY~~~sk~~lPrI~~vLe~R~~~I~~DLe~Ae~lk~EAe~~~a~Ye~~LaeAR~e 120 (204) T PRK09174 41 SGVFPPFDSTHYASQLLWLAITFGLFYLFLSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARSK 120 (204) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999998345089999999999999999999976037779999999998799999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999-841599999999999 Q gi|254781086|r 90 AKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDR 168 (176) Q Consensus 90 a~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~ 168 (176) +..|+.+++.++....+..+.+++.++++++.+++++|...|.+++.+|+.++.+++..++++| +.+++++.+.+.|+. T Consensus 121 A~~Ii~~Ar~~a~~~~e~~~a~~ea~L~~kia~AE~~I~~~r~~Al~~V~~IA~d~A~~iV~~L~G~~v~~~~v~~aV~a 200 (204) T PRK09174 121 AASIAQAAREAAKAKAEAERAEIEASLEKKLKEAEERIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKASVSAAVKA 200 (204) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999998799999999999999999986899999999999987 Q ss_pred HH Q ss_conf 99 Q gi|254781086|r 169 KR 170 (176) Q Consensus 169 ~~ 170 (176) .. T Consensus 201 a~ 202 (204) T PRK09174 201 AR 202 (204) T ss_pred HC T ss_conf 50 No 3 >PRK06569 F0F1 ATP synthase subunit B'; Validated Probab=100.00 E-value=1e-33 Score=228.20 Aligned_cols=153 Identities=22% Similarity=0.438 Sum_probs=148.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98859887688999999999999999999955408999999999999999999999999999999999999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE 92 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ 92 (176) ||||||+||+||+|||+|+|++||++++||++|+|.++|+.|++.|.++|+.|++.+.+++....+|+..|.+||.++.. T Consensus 1 MPQld~~~~~sQifWL~itF~~ly~~~sk~~lPri~~~le~R~~~I~~dl~~A~~~k~eae~~~~~ye~~l~~Ak~eA~~ 80 (157) T PRK06569 1 MPQFDIATYYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTLEVEKLNKYYNEEIDKTNTEIDR 80 (157) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998224089999999999999999999986048779998999999889999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999-841599999999 Q gi|254781086|r 93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKI 165 (176) Q Consensus 93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~ 165 (176) ++.+++..+....+..+.+++++++..+.+++++|...+.+++.++.+++.+++..++++| |.++|.+.++.+ T Consensus 81 i~~ea~~~l~~e~~~k~~~le~~l~~~i~~aekeI~~~k~~a~~~i~~ia~eia~~iI~kl~G~k~n~s~l~~i 154 (157) T PRK06569 81 LKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKITGTKADMNLLQNI 154 (157) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999999999999999999999999999999998787699999999999999986888778876432 No 4 >PRK13455 F0F1 ATP synthase subunit B; Provisional Probab=100.00 E-value=2.6e-31 Score=213.30 Aligned_cols=169 Identities=18% Similarity=0.304 Sum_probs=160.2 Q ss_pred CCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9756453346899885-98876889999999999999999999554-089999999999999999999999999999999 Q gi|254781086|r 1 MASSSSSDFSSRFPPF-DTSTFLSQFFWLAIIFGIFYWVTHRFILP-RLSSIMEVRRNLISSDQEKMDSAKREVESMISS 78 (176) Q Consensus 1 ~~~~~~~~~~~gmpql-d~~~f~~q~fw~~I~F~il~~il~~~~~~-pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~ 78 (176) ++++++.+++||||+| ||+ ||++|+|++|++++.||.+| ||.++||+|.+.|.++|++|++++++|++++.+ T Consensus 10 ~~~~~~~~~~~~~~~~~d~~------FWv~IsFvif~~iL~~~~vp~~I~~~LD~R~~~I~~dLdeAe~lreEAe~lLae 83 (184) T PRK13455 10 LVASPALAAGGPFFSLSNTD------FIVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLAS 83 (184) T ss_pred HHCCHHHHCCCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 96286876479988888954------999999999999999995589999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999999-8415 Q gi|254781086|r 79 YEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSV 157 (176) Q Consensus 79 ~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~ 157 (176) |++++.+++.++.+|+++|+.+++...++.+.+++.+++++...++.+|+.++.++..+|++.+.+++..+++++ +.++ T Consensus 84 ye~~l~~A~~EA~~Ii~~Ak~~A~~~~~~~~~~a~~~i~r~~~~Ae~~I~~~k~~A~~eir~~a~~lAi~aA~kii~~~l 163 (184) T PRK13455 84 YERKQREVQEQADRIVANARDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVRAVRDRAISVAVAAAADVIAKQM 163 (184) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999999999999999999999999999999999999999999988889999999999999998657 Q ss_pred CHHHHHHHHHHHHHHHHC Q ss_conf 999999999999942106 Q gi|254781086|r 158 SDADVQKILDRKRDGIDA 175 (176) Q Consensus 158 ~~~~~~~~i~~~~~~i~~ 175 (176) +++..+++||++++++++ T Consensus 164 ~~~~~~~LId~~I~el~~ 181 (184) T PRK13455 164 TAAEANALIDEAIKEVEA 181 (184) T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 999899999999999976 No 5 >PRK13460 F0F1 ATP synthase subunit B; Provisional Probab=100.00 E-value=1e-30 Score=209.67 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=156.3 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68998859887688999999999999999999955408999999999999999999999999999999999999999999 Q gi|254781086|r 10 SSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAH 89 (176) Q Consensus 10 ~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~e 89 (176) .+||--|+|+.+ .+||.+|+|++|||+++||+||||.++|++|++.|.+++++|++.+.+++..+.+|+..|.+|+.+ T Consensus 6 ~~~~~~l~~n~~--~~iw~~i~F~il~~il~kf~~~pi~~~Ld~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~A~~e 83 (173) T PRK13460 6 AKGLSLLDVNPG--LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDE 83 (173) T ss_pred HCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 056775889877--999999999999999999968889999999999999889999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999-841599999999999 Q gi|254781086|r 90 AKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDR 168 (176) Q Consensus 90 a~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~ 168 (176) +.+|+++|+.+++...++.+.+++.++++++.+++.+|+.++.++..++++.+++++..+++|+ +.+++.++++++|++ T Consensus 84 a~~Ii~~A~~~Ae~~~~~~~~~A~~ea~~i~~~A~~~Ie~ek~~A~~~lr~ei~~lav~~A~kii~~~ld~~~~~~lid~ 163 (173) T PRK13460 84 ANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIET 163 (173) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999999999877599989999999 Q ss_pred HHHHHHCC Q ss_conf 99421069 Q gi|254781086|r 169 KRDGIDAF 176 (176) Q Consensus 169 ~~~~i~~~ 176 (176) +++++++. T Consensus 164 ~i~elgk~ 171 (173) T PRK13460 164 ELAKLGKL 171 (173) T ss_pred HHHHHHCC T ss_conf 99873004 No 6 >PRK06231 F0F1 ATP synthase subunit B; Validated Probab=100.00 E-value=3.8e-30 Score=206.08 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=156.6 Q ss_pred CCCCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6899885988768-------899999999999999999995540899999999999999999999999999999999999 Q gi|254781086|r 10 SSRFPPFDTSTFL-------SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEES 82 (176) Q Consensus 10 ~~gmpqld~~~f~-------~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~ 82 (176) .+|.|.|+|++-+ ..+||.+|+|+||+|+|++|+||||.++|++|++.|++++++|++.++++++++++|+.. T Consensus 29 ~~~~~~~~~~~iin~lfPn~~~Fia~lIaF~ILl~lL~k~awKPI~k~Ld~R~~kI~~~L~~Aekar~EAe~ll~e~e~~ 108 (201) T PRK06231 29 TENVEELKSKSIINELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQR 108 (201) T ss_pred CCCCHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 69802106898999977886999999999999999999997878999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999-84159999 Q gi|254781086|r 83 LAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDAD 161 (176) Q Consensus 83 l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~ 161 (176) +.+|+.++++|+++|+.++++..++.+.+++.++++++.+|+.+|+.+|.++..++++.+++++..+++|+ +.++++++ T Consensus 109 L~eAr~EA~eII~~Ak~~Ae~~~~ei~~~A~~eA~~i~e~A~~eIe~Ek~~A~~elr~eva~LAv~aAeKiI~k~Ld~~~ 188 (201) T PRK06231 109 HENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDRED 188 (201) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999986679998 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999994210 Q gi|254781086|r 162 VQKILDRKRDGID 174 (176) Q Consensus 162 ~~~~i~~~~~~i~ 174 (176) ++++||++++++| T Consensus 189 ~~~LIde~IkeLe 201 (201) T PRK06231 189 DDKLVDEFIRELE 201 (201) T ss_pred HHHHHHHHHHHCC T ss_conf 9999999986548 No 7 >PRK07352 F0F1 ATP synthase subunit B; Validated Probab=99.98 E-value=1.7e-29 Score=202.06 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=158.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 53346899885988768899999999999999999995540899999999999999999999999999999999999999 Q gi|254781086|r 6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAI 85 (176) Q Consensus 6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~e 85 (176) +||++||+ ++|+.+|.+|+ |+|+||+++|+||+||||.++|++|++.|.+++++|++.+.+|+..+.+|++++.+ T Consensus 8 a~e~~~~f-g~n~~~l~~~i----Inf~Il~~iL~~f~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~l~e~e~~l~~ 82 (174) T PRK07352 8 ATEASGGF-GLNLNLLETNL----INLAIVIGLLYYFLRGFLGKILERRREAILQALKEAEERLRKAAQALAEAQQKLAQ 82 (174) T ss_pred HHHHCCCC-CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99763788-98912899999----99999999999995989999999999999999999999999999999999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999-84159999999 Q gi|254781086|r 86 ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQK 164 (176) Q Consensus 86 ak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~ 164 (176) ++.++.+|+++++.+++...++...+++.++++++.+++.+|+.++.++..++++.+.+++..+++++ ...+++..+++ T Consensus 83 a~~ea~~Ii~~A~~~a~~~~~~~~~~A~~e~e~i~~~A~~~Ie~e~~~a~~elr~ei~~lAi~~A~kil~~~ld~~~~~~ 162 (174) T PRK07352 83 AQQEAERIRADAKARAEAIRQEIEKQAIEDMARLKQTAAADLSAEAERVIAQLRREAAELAIAKAESQLPGRLDEAAQQR 162 (174) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 79999999999999999999999999999999999999999999999999999999999999999999987749999999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999942106 Q gi|254781086|r 165 ILDRKRDGIDA 175 (176) Q Consensus 165 ~i~~~~~~i~~ 175 (176) +||++++++.+ T Consensus 163 lId~~I~~lGg 173 (174) T PRK07352 163 LIDRSIANLGG 173 (174) T ss_pred HHHHHHHHHCC T ss_conf 99999997479 No 8 >PRK13453 F0F1 ATP synthase subunit B; Provisional Probab=99.97 E-value=1.5e-28 Score=196.17 Aligned_cols=156 Identities=16% Similarity=0.222 Sum_probs=149.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85988768899999999999999999995540899999999999999999999999999999999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII 94 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii 94 (176) ++|+. .+||.+|+|+||+++|++|+||||.++|++|++.|.+++++|++.+.+++..+++|+..|.+++.++.+|+ T Consensus 15 gidw~----t~~~q~I~F~il~~ll~kf~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~a~~ea~~Ii 90 (173) T PRK13453 15 GVEWG----TVIVQVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKIL 90 (173) T ss_pred CCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99789----99999999999999999998989999999999999988999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999-84159999999999999421 Q gi|254781086|r 95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI 173 (176) Q Consensus 95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i 173 (176) ++++.+++...++...+++.++++++.+++.+|+.++..+..+++..+.+++..+++|+ +.++++..++++|+++++.+ T Consensus 91 ~~A~~~Ae~~~~~~~~~A~~ea~~i~~~A~~~Ie~ek~~a~~elr~ei~~lav~~A~Kil~~~l~~~~~~~LId~~i~e~ 170 (173) T PRK13453 91 EDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKALVDKYLKEA 170 (173) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999986769998999999999861 Q ss_pred H Q ss_conf 0 Q gi|254781086|r 174 D 174 (176) Q Consensus 174 ~ 174 (176) + T Consensus 171 G 171 (173) T PRK13453 171 G 171 (173) T ss_pred C T ss_conf 7 No 9 >PRK13461 F0F1 ATP synthase subunit B; Provisional Probab=99.97 E-value=3.9e-28 Score=193.71 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=149.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85988768899999999999999999995540899999999999999999999999999999999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII 94 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii 94 (176) .+|+.| +||.+|+|++|+|+|++|+||||.++|++|++.|.+++++|++.+.+++..+.+|+..|.+++.++.+|+ T Consensus 2 ~in~~t----~i~q~inF~il~~il~kf~~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~a~~ea~~Ii 77 (159) T PRK13461 2 EINIPT----IIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDEKIEKADEDAEKARELKLKNERILKSAKEEGKKIV 77 (159) T ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 785999----9999999999999999997888999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999-84159999999999999421 Q gi|254781086|r 95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI 173 (176) Q Consensus 95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i 173 (176) ++++.+++...+....+++.++++++.+++.+|+.++.++..++++.+.+++..+++|+ +.++++++++++||++++.+ T Consensus 78 ~~A~~~A~~~~~~i~~~A~~ea~~i~~~A~~~Ie~e~~~a~~el~~ev~~la~~~A~kil~~~ld~~~~~~lid~~i~el 157 (159) T PRK13461 78 EEYKSKAENVYEEIVKEAHEEAESIIERAKLEIQREKEKAEYEIKNQAVDLAVLLSSKALEESIDESEHRELIKDFISKV 157 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC T ss_conf 99999999999999999999999999999999999999999999999999999999999987759998999999999785 Q ss_pred H Q ss_conf 0 Q gi|254781086|r 174 D 174 (176) Q Consensus 174 ~ 174 (176) + T Consensus 158 G 158 (159) T PRK13461 158 G 158 (159) T ss_pred C T ss_conf 8 No 10 >PRK05759 F0F1 ATP synthase subunit B; Validated Probab=99.96 E-value=4.7e-27 Score=186.98 Aligned_cols=154 Identities=26% Similarity=0.359 Sum_probs=147.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85988768899999999999999999995540899999999999999999999999999999999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII 94 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii 94 (176) -||+ .+||.+|+|+|||++|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+++.++.+++ T Consensus 2 ~~n~-----T~~~~~I~F~il~~ll~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~~a~~~~~e~~~~l~~a~~ea~~ii 76 (156) T PRK05759 2 NINA-----TLIGQLIAFLILVWFCMKFVWPPIMKALEERQKKIADGLAAAERAKKELEAAQAKAEEQLAEARAEAAEII 76 (156) T ss_pred CCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6619-----99999999999999999997878999999999999989999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999-84159999999999999421 Q gi|254781086|r 95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI 173 (176) Q Consensus 95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i 173 (176) ++++.++....+..+.+++.++++++.+++.+|..++.++..+++..+.+++..+++|+ +..+++..++++||+++++| T Consensus 77 ~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~I~~e~~~a~~~l~~~i~~la~~~a~kil~~~l~~~~~~~lid~~i~~l 156 (156) T PRK05759 77 EQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAHSDLIDKLIAEL 156 (156) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC T ss_conf 99999999999999999999999999999999999999999999999999999999999886779998999999987439 No 11 >PRK09173 F0F1 ATP synthase subunit B; Validated Probab=99.96 E-value=3.6e-27 Score=187.70 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=146.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999554-0899999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILP-RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ 103 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~-pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~ 103 (176) -||++|+|++||++++||+|| ||.++|++|.+.|.++|++|++.+++++.++++|+..+.+|+.++.+|+++|+.+++. T Consensus 4 ~FW~~I~fvi~~~ll~~~~~p~~i~~~Ld~R~~~I~~~l~~Ae~~~~eAe~~~~e~e~~l~~A~~ea~~Ii~~A~~~a~~ 83 (159) T PRK09173 4 TFWAFVGLVLFLALVVYLKVPGMIGRSLDERADRIKNELDEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEA 83 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 29999999999999999977899999999999999999999998899999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999999999999999999999999999999999-8415999999999999942106 Q gi|254781086|r 104 NLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGIDA 175 (176) Q Consensus 104 ~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i~~ 175 (176) ..++...+++.++.++..+++.+|..++..+..+|++.+.+++..+++++ +.+++++.++++|+++++.|++ T Consensus 84 ~~~~~~~~a~~~~~~~~~~Ae~~I~~~~~~A~~elk~~~~~lai~~a~kii~~~ld~~~~~~Li~~~i~ev~~ 156 (159) T PRK09173 84 LTAEAKRKTEEYVARRNKLAEQKIAQAEADAINAVRASAVDLAVAAAGKLLAEKVDAKAAGELFKDALAQVKT 156 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999998999999999999999999999999999999998667999899999999999976 No 12 >CHL00118 atpG ATP synthase CF0 B' subunit; Validated Probab=99.96 E-value=1.6e-27 Score=189.92 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=139.8 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 64533468998859887688999999999999999999955408999999999999999999999999999999999999 Q gi|254781086|r 4 SSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESL 83 (176) Q Consensus 4 ~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l 83 (176) ..+.+++|||..||+++| |.+|+|+||||+|++|+||||.++|++|++.|.+++++|+..+.+++.+.++|+..| T Consensus 9 ~~a~~~~~~~~~~n~Tl~-----~q~i~FliL~~lL~kf~~~Pi~~~ld~R~~~I~~~l~~Ae~~~~ea~~~~~eye~~L 83 (156) T CHL00118 9 IEAEEPEGGLFDFNATLP-----LMALQFLLLMVLLNAIFYKPIGKILDEREEYIRSNLAKASSKLAKANELTAQYEEQL 83 (156) T ss_pred HHHHCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 986444488708658999-----999999999999999989899999999999999889999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999984 Q gi|254781086|r 84 AIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF 155 (176) Q Consensus 84 ~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~ 155 (176) .+|+.++..++++++.+++...++.+.+++.++++++.+++.+|+.++.++..++++.+.+++..+++|+.+ T Consensus 84 ~~Ar~Ea~~ii~~A~~~a~~~~~~i~~~A~~ea~~~i~~A~~eIe~ek~~a~~el~~ev~~la~~ia~Kil~ 155 (156) T CHL00118 84 SKARKEAQLLIAQSQKEAQEIVQEELKQAQKNAESLVEEATKQLEIQKEQALKSLESQVDTLSDQIKSKLLS 155 (156) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999999999999999999999999999999999999999999999998758 No 13 >CHL00019 atpF ATP synthase CF0 B subunit Probab=99.95 E-value=3.3e-25 Score=175.58 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=154.6 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 34689988598876889999999999999999999554089999999999999999999999999999999999999999 Q gi|254781086|r 8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIAR 87 (176) Q Consensus 8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak 87 (176) +..||+ +||+..|.+++ |||+|++++|+||+++|+.++|++|+..|..++++|++.+.+|++.+.+|+.+|..|+ T Consensus 15 ~~~~~f-g~N~niletnl----INl~Ivi~iL~~f~~~~L~~~L~~R~~~I~~~I~eAE~~~~eA~~~L~e~~~~L~~A~ 89 (184) T CHL00019 15 PSAGSF-GFNTDILETNL----INLSVVLGVLIYFGKGVLSDLLDNRKQRILNTIRNSEERREEAIEKLEKARARLRQAE 89 (184) T ss_pred CCCCCC-CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 556667-76740999999----9999999999999599999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999-98415999999999 Q gi|254781086|r 88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKIL 166 (176) Q Consensus 88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i 166 (176) .++.+|+.+|+..++...++...+++.+++++...+...|..++.++..+++..+.+++...+.+ +...++++.+.++| T Consensus 90 ~eA~~I~~~A~~~ae~~k~~i~~~a~~e~erl~~~A~~~I~~E~~kA~~elr~ev~~lAl~~a~k~L~~~Ld~~~q~~LI 169 (184) T CHL00019 90 IEADEIRVNGYSEIEREKLNLINSTYEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTI 169 (184) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999999999998664999999999 Q ss_pred HHHHHHHHCC Q ss_conf 9999421069 Q gi|254781086|r 167 DRKRDGIDAF 176 (176) Q Consensus 167 ~~~~~~i~~~ 176 (176) |.++..+.++ T Consensus 170 d~~I~~LG~~ 179 (184) T CHL00019 170 DANIGLLGAM 179 (184) T ss_pred HHHHHHHHCC T ss_conf 9999987162 No 14 >COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion] Probab=99.95 E-value=6.1e-25 Score=173.97 Aligned_cols=151 Identities=26% Similarity=0.423 Sum_probs=146.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999955408999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN 104 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~ 104 (176) +||.+|+|++|||++++|+||||.++|++|...|.+++++|++.+.++..+..+|+..+.+++.++..|++.|+.++... T Consensus 9 ~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~ 88 (161) T COG0711 9 ILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQI 88 (161) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999968679999999999999889999998999999999999999999999999999999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999999999999999999999999-8415999999999999942106 Q gi|254781086|r 105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGIDA 175 (176) Q Consensus 105 ~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i~~ 175 (176) .++.+.+++.++++++..++.+|..++..+..+++..+.+++..+++++ +..++......+++.++..++. T Consensus 89 ~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aekll~~~~~~~~~~~lid~~~~~l~~ 160 (161) T COG0711 89 AEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGE 160 (161) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999999999999999999999999999999999999999989875789899999999986334 No 15 >PRK13428 F0F1 ATP synthase subunit delta; Provisional Probab=99.94 E-value=1.5e-24 Score=171.59 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=142.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999955408999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN 104 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~ 104 (176) ++|.+|.|.+++|++|||+|||+.++|++|.+.|.+.|+.|+++..+++..+++|+++|.+||.|+..|+++|+.++..+ T Consensus 4 fIgqLI~Faii~f~~~KfVvP~~~k~l~eR~daIeggie~Ae~Aqaea~~al~~y~~qLaeAr~EAa~IreeAr~~~~~I 83 (445) T PRK13428 4 FIGQLIGFAVIVFLVVRFVVPPVRRLMAAQQDAVRQQLADSATAADKLAEADQAHAKAVEDAKAEAHRVVEEARTDAERI 83 (445) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999985279999999999999889999999999999999999999999999999999999889999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCH-HHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999999999999999999999999-841599-9999999999942106 Q gi|254781086|r 105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSD-ADVQKILDRKRDGIDA 175 (176) Q Consensus 105 ~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~-~~~~~~i~~~~~~i~~ 175 (176) .++++.+++.|.++++.+++.+|+.+|.++..+++......+..+++|| +..+.| ......||++++++|+ T Consensus 84 ~ae~raqA~~Ea~RI~~~g~~Qiea~Rqq~v~~LR~e~G~~av~lA~~iVge~l~D~a~qs~tVDRFL~eLd~ 156 (445) T PRK13428 84 AEQLRAQADVEAERIKVQGARQVQLLRQQLIRQLRLELGHESVRQARELVRNHVADPAQQSATVDRFLDELDA 156 (445) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 9999988889999999989999999999999999999879999999999865404388876159888999871 No 16 >PRK08476 F0F1 ATP synthase subunit B'; Validated Probab=99.94 E-value=1.1e-24 Score=172.41 Aligned_cols=138 Identities=20% Similarity=0.272 Sum_probs=131.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98859887688999999999999999999955408999999999999999999999999999999999999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE 92 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ 92 (176) |-.+||. .+||.+|+|++|+|+|++|+||||.++|++|++.|.+++++|++.+.+++.+..+|+..|.+||.++.. T Consensus 2 ml~~n~~----~~i~~~i~FliL~~iL~kflykPi~k~ld~R~~~I~~~l~~A~~~~~ea~~l~~e~e~~L~~Ar~ea~~ 77 (141) T PRK08476 2 MLDINPY----LMLLTFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSESVEINAEIEAILKNAREEANK 77 (141) T ss_pred CCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6577677----999999999999999999958789999999999999889999998999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999998 Q gi|254781086|r 93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLG 154 (176) Q Consensus 93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~ 154 (176) ++++++.++.+..++.+.+++.++++.+..+..+|+.++.++..++++.+.+++..+++|+. T Consensus 78 ii~~A~~~A~~~~~~~~~~Ar~eae~~~~~a~~~ie~ek~~a~~~L~~qv~~Ls~~ia~Ki~ 139 (141) T PRK08476 78 IRQEAIAAAKEEAEQKIEAKKEELESKYEAFAQQLANQKQELKEQLLSQMPEFKEALNAKLS 139 (141) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999889999999998673 No 17 >PRK07353 F0F1 ATP synthase subunit B'; Validated Probab=99.94 E-value=1.5e-24 Score=171.53 Aligned_cols=139 Identities=19% Similarity=0.303 Sum_probs=132.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98859887688999999999999999999955408999999999999999999999999999999999999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE 92 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ 92 (176) |..||. .+||.+|+|++|||+|++|+||||.++|++|++.|.+++++|+..+.+++.+..+|+..|.+|+.++.. T Consensus 1 m~~~n~-----Tl~~q~i~Flil~~il~k~l~~Pi~~~ld~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~ea~~ 75 (140) T PRK07353 1 LFDFDA-----TLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKEKLAEAEKLEAQYEQQLASARKQAQQ 75 (140) T ss_pred CCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 915128-----899999999999999999988889999999999998889999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999841 Q gi|254781086|r 93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFS 156 (176) Q Consensus 93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~ 156 (176) ++++++.++....++.+.+++.++++.+.+++.+|+.++..+..++++.+.+++..+++|+.+. T Consensus 76 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~A~~~Ie~ek~~a~~~l~~ev~~la~~ia~Kilg~ 139 (140) T PRK07353 76 VIAEAEAEADKLYAEALAEAQAEAQASKEKARREIEQQKQSALAQLEQQVDALSRQILEKLLAA 139 (140) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999999999999999999999999999999999999999999999987669 No 18 >TIGR01144 ATP_synt_b ATP synthase F0, B subunit; InterPro: IPR005864 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex. Probab=99.94 E-value=3.5e-24 Score=169.29 Aligned_cols=145 Identities=20% Similarity=0.314 Sum_probs=141.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999554089999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQ 108 (176) Q Consensus 29 ~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~ 108 (176) +|+|++|+||++||+||||.++|+.|+..|.++|..|+..++++..+..+.+..|.+||.++..|++.|........++. T Consensus 2 ~~~F~llv~f~~KY~w~Pl~~~~~~R~~~IA~~L~~AE~~~~~~~~~~~~~~~~l~~AK~~A~~ii~~A~k~~~~~~ee~ 81 (147) T TIGR01144 2 LISFILLVWFCKKYVWPPLAKAIETRQKKIADDLASAERAKKEAALAQKEAQVLLKEAKDEAQEIIENANKRGSEILEEI 81 (147) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999886237999999988998598899999988889999989889999888888899999878888869999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999-84159999999999999421 Q gi|254781086|r 109 REVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL-GFSVSDADVQKILDRKRDGI 173 (176) Q Consensus 109 ~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl-~~~~~~~~~~~~i~~~~~~i 173 (176) ..+|+.+..+++.+++.+|+.++.++.++|+..+.++|..+++|+ ..++++.....+||+++..+ T Consensus 82 ~~~A~~e~~ki~~~A~~EI~~~~~~Ar~~Lr~~Va~L~V~~AeKii~~~iD~~~~~d~id~~~~~l 147 (147) T TIGR01144 82 KAEAREEREKILASARAEIEAEKERAREELRKQVADLAVAGAEKIIEREIDKQAQKDLIDKLVAEL 147 (147) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999898899999988445999999999999999999999999999988789999888999987319 No 19 >CHL00167 consensus Probab=99.92 E-value=5.3e-22 Score=155.82 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=153.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 53346899885988768899999999999999999995540899999999999999999999999999999999999999 Q gi|254781086|r 6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAI 85 (176) Q Consensus 6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~e 85 (176) +.+++||+ +||+..|.+.+ |||+|++++|.||+.+|+.++|+.|+..|..++.+|++...+|...+.+++.+|.. T Consensus 15 ~~~~~~gF-glNtnilETNl----INl~ivigiL~~fg~~~L~~~L~~Rke~I~~~I~eAE~r~~eA~~~L~eak~~L~q 89 (182) T CHL00167 15 ELSNEKSF-GFNPDILEANV----INILILLSGLIYLGKNFLGSSLEERQQKVLEAIQESEERLEQANSRLSESEKQLAQ 89 (182) T ss_pred CCCCCCCC-CCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 12025886-77743999999----99999999999984676898999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999-984159999999 Q gi|254781086|r 86 ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQK 164 (176) Q Consensus 86 ak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~ 164 (176) |+.++.+|+.+++..++...++...+++.+++++...+...|..++.++..+++..+..++..-+.+ +...++++.+.+ T Consensus 90 A~~eA~~Ir~~a~~~ae~~k~~i~~~a~~d~erl~~~a~~~I~~E~~ra~~qlr~qv~~lAl~ka~~~L~~~Ld~~~q~~ 169 (182) T CHL00167 90 AQIVIEQIKKEAEKTARKVKSSILAQGKLDIERLTNNGKSSIETAEKQIKKQIQQQITFLAIKRVTLQLENQMTPNLQLR 169 (182) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 99999999999999999999999999999999999999989999999999999999999999999999886649999999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999942106 Q gi|254781086|r 165 ILDRKRDGIDA 175 (176) Q Consensus 165 ~i~~~~~~i~~ 175 (176) +||.++..+.+ T Consensus 170 lId~~I~~Lgg 180 (182) T CHL00167 170 IIDNNIAKLGG 180 (182) T ss_pred HHHHHHHHHCC T ss_conf 99999998679 No 20 >pfam00430 ATP-synt_B ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006 Probab=99.91 E-value=2.9e-22 Score=157.43 Aligned_cols=131 Identities=24% Similarity=0.233 Sum_probs=126.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999955408999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN 104 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~ 104 (176) ++|.+|+|++|||+|++|+||||.++|++|++.|.++++.|+..+.+++..+.+|+..|.+++.++..++++++.++... T Consensus 2 l~~qlI~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~ea~~~~~~~e~~l~~a~~ea~~i~~~a~~~a~~~ 81 (132) T pfam00430 2 LETNLINFLILVGLLIYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKL 81 (132) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88899999999999999979889999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999984 Q gi|254781086|r 105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF 155 (176) Q Consensus 105 ~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~ 155 (176) .+..+.+++.++++++.+++..|..++..+..++++.+.+++..+++|+.+ T Consensus 82 ~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~e~~~la~~~aekilG 132 (132) T pfam00430 82 KEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQVAALAVQIAEKLLG 132 (132) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999999999999999999999999999999999999976559 No 21 >TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase. Probab=99.91 E-value=1e-21 Score=154.03 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=144.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85988768899999999999999999995540899999999999999999999999999999999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII 94 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii 94 (176) .+|.-|++.| +|||+||+|+|++|+|+||.++|++|++.|...+.+|++.+.+|++...+|+.++.+++.++..++ T Consensus 2 ~idw~T~~~q----~iNfliL~~lL~rFl~~Pv~~~i~~R~~~I~~~l~~A~~~~~eA~~~~~~~e~~~~~~~~e~~~~l 77 (246) T TIGR03321 2 LIDWFTVIAQ----LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLL 77 (246) T ss_pred CCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0109999999----999999999999996889999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999841599999-99999999421 Q gi|254781086|r 95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADV-QKILDRKRDGI 173 (176) Q Consensus 95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~-~~~i~~~~~~i 173 (176) ++++.+++...+....+++.+++.....+...+..++......+.+.+...+..++.|+...+.++.. ..+++.+++.+ T Consensus 78 ~~A~~eAe~er~~ll~~Ar~eae~~r~~~~~~l~~E~~~~~~~l~~r~~~~~~~ia~k~L~~Lad~~le~~~v~~f~~rL 157 (246) T TIGR03321 78 TKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRL 157 (246) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999998663247999999999998 Q ss_pred H Q ss_conf 0 Q gi|254781086|r 174 D 174 (176) Q Consensus 174 ~ 174 (176) . T Consensus 158 ~ 158 (246) T TIGR03321 158 R 158 (246) T ss_pred H T ss_conf 7 No 22 >PRK06568 F0F1 ATP synthase subunit B; Validated Probab=99.89 E-value=1.1e-20 Score=147.75 Aligned_cols=145 Identities=19% Similarity=0.271 Sum_probs=135.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76889999999999999999999554089999999999999999999999999999999999999999999999999999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVA 99 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~ 99 (176) .|++..||++|+|++|++++|+.+.++|.+.||.|...|.+++++|++++++|+.++.+|++++.+++.++.+|++.|+. T Consensus 2 ~fiDatFWVaISF~IFv~Liy~k~pk~I~~~LD~kI~eIK~~ideAekLkeEAk~lL~e~ekKi~~~~~e~~emI~~Ak~ 81 (154) T PRK06568 2 NFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNE 81 (154) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97540699999999999999987589999889999999999998999878999999999999998789999999998689 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999841--59999999 Q gi|254781086|r 100 AAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFS--VSDADVQK 164 (176) Q Consensus 100 ~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~--~~~~~~~~ 164 (176) ++++...+...+..+.++.+...|++.|.+++.+|..++++.+++++..+++++..+ +++.++.+ T Consensus 82 ~aEk~i~~~~kk~~~~~e~kkk~A~~kI~Q~K~~AikdIkn~~~~~~i~~v~~~~kn~~~s~~~i~~ 148 (154) T PRK06568 82 VTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYFQSVKLSESNIAK 148 (154) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 9999999999999999998898699999999999999999999999999999999760010778988 No 23 >PRK08475 F0F1 ATP synthase subunit B; Validated Probab=99.85 E-value=6.9e-19 Score=136.56 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=122.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999995540899999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ 103 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~ 103 (176) .+||.+|||+||+.+||||+++||.+++..|++.|.++|++++....++++.+.+++++|.+|+.++.+|+..|+.+++. T Consensus 26 Dii~r~iNf~I~~gIL~yf~~kpi~~~l~~R~~~I~~~L~eae~~~~eA~~~l~~~~~kLe~Ak~eA~~Iie~Akkeae~ 105 (170) T PRK08475 26 DIIERTINFLIFVGILWYFAAKPIKNFYKSRINSISKRLEEIQAKLKESKEKKKDALKKLEEAKEKAELIVETAKKEAYI 105 (170) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 05999999999999999992878999999899999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999998415999999999 Q gi|254781086|r 104 NLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKIL 166 (176) Q Consensus 104 ~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i 166 (176) ..+....+++.+++++..+++..|+.+.+++..++++.+. .++...=...++.++.-.++ T Consensus 106 ~kq~I~~~a~~eie~L~~~a~e~i~~E~rka~~el~~eil---~e~~~~~~~~l~~~~~~~~~ 165 (170) T PRK08475 106 LTQKIEKQTKDDIENLIKSFEEQMDFEVRKIKRELVEEIL---NELFESKKVSLDQSECVNII 165 (170) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHHH T ss_conf 9999999999999999999999999999999999999999---99872713456899999999 No 24 >pfam02326 YMF19 Plant ATP synthase F0. This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34). Probab=99.33 E-value=4.3e-12 Score=94.62 Aligned_cols=71 Identities=35% Similarity=0.606 Sum_probs=56.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8859887688999999999999999999955408999999999999999999999999999999999999999 Q gi|254781086|r 14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIA 86 (176) Q Consensus 14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~ea 86 (176) ||||+.||++|+||++|.|+++|+++.++++|+|.++++.|+..+..... + ..+.+-......++..+.+. T Consensus 1 PQLD~~t~~sQ~fWl~~~f~~~y~~~~~~~lP~i~~il~~R~~~~~~~~~-~-~~~~~~~~~~~~~d~~i~~~ 71 (84) T pfam02326 1 PQLDKFTYFTQFFWLCLFFFTFYIFLLNFILPKISRILKLRKKLLSSLIS-S-KLGKEQSLLGVSKDSLLANS 71 (84) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHCCCCCCCHHHHHHHHHHC T ss_conf 99861440999999999999999999993304588999999999998888-8-75437310003179999975 No 25 >PRK06231 F0F1 ATP synthase subunit B; Validated Probab=99.13 E-value=8.6e-08 Score=68.03 Aligned_cols=148 Identities=14% Similarity=0.207 Sum_probs=112.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH Q ss_conf 99885988768899999999999999999995540899---999999999999999999----99999999999999999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSS---IMEVRRNLISSDQEKMDS----AKREVESMISSYEESLA 84 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~---~l~~R~~~I~~~l~~A~~----~~~eae~~~~~~e~~l~ 84 (176) =+|.+ -.|+.|++-++|.+++|..++|+.+.+-+.. -+.+--+.-...-++|+. .+.....+..+.++.+. T Consensus 44 lfPn~--~~Fia~lIaF~ILl~lL~k~awKPI~k~Ld~R~~kI~~~L~~Aekar~EAe~ll~e~e~~L~eAr~EA~eII~ 121 (201) T PRK06231 44 LFPNF--WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID 121 (201) T ss_pred HCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77886--9999999999999999999978789999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999-98415999999 Q gi|254781086|r 85 IARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQ 163 (176) Q Consensus 85 eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~ 163 (176) +|+.++..+.++...++....+..+.+++.++++...++..++ ..++.+.++..+..++++ +..+.++.-++ T Consensus 122 ~Ak~~Ae~~~~ei~~~A~~eA~~i~e~A~~eIe~Ek~~A~~el-------r~eva~LAv~aAeKiI~k~Ld~~~~~~LId 194 (201) T PRK06231 122 QANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQL-------QKESVELAMLAAEELIKKKVDREDDDKLVD 194 (201) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999-------999999999999999986679998999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781086|r 164 KILDR 168 (176) Q Consensus 164 ~~i~~ 168 (176) +.|++ T Consensus 195 e~Ike 199 (201) T PRK06231 195 EFIRE 199 (201) T ss_pred HHHHH T ss_conf 99865 No 26 >PRK09173 F0F1 ATP synthase subunit B; Validated Probab=99.04 E-value=4.3e-07 Score=63.70 Aligned_cols=149 Identities=11% Similarity=0.153 Sum_probs=106.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH Q ss_conf 59887688999999999999999-999955408---9999999999999999999999999----999999999999999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWV-THRFILPRL---SSIMEVRRNLISSDQEKMDSAKREV----ESMISSYEESLAIAR 87 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~i-l~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~ea----e~~~~~~e~~l~eak 87 (176) |||+||. ++.++|+|++++++ ++..+..-+ ...+..--+.-...-++|+....+. ..+..+.+..+.+|+ T Consensus 1 ~d~~FW~--~I~fvi~~~ll~~~~~p~~i~~~Ld~R~~~I~~~l~~Ae~~~~eAe~~~~e~e~~l~~A~~ea~~Ii~~A~ 78 (159) T PRK09173 1 MDATFWA--FVGLVLFLALVVYLKVPGMIGRSLDERADRIKNELDEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAE 78 (159) T ss_pred CCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9812999--99999999999999778999999999999999999999988999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999-98415999999999 Q gi|254781086|r 88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKIL 166 (176) Q Consensus 88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i 166 (176) .++..++++++.++....+.....++.++.....+|..+ ...++.+.+...+..++.+ |..+.++..++..+ T Consensus 79 ~~a~~~~~~~~~~a~~~~~~~~~~Ae~~I~~~~~~A~~e-------lk~~~~~lai~~a~kii~~~ld~~~~~~Li~~~i 151 (159) T PRK09173 79 REAEALTAEAKRKTEEYVARRNKLAEQKIAQAEADAINA-------VRASAVDLAVAAAGKLLAEKVDAKAAGELFKDAL 151 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 999999999999999999999998999999999999999-------9999999999999999986679998999999999 Q ss_pred HHHHHHH Q ss_conf 9999421 Q gi|254781086|r 167 DRKRDGI 173 (176) Q Consensus 167 ~~~~~~i 173 (176) ++.-..+ T Consensus 152 ~ev~~~l 158 (159) T PRK09173 152 AQVKTRL 158 (159) T ss_pred HHHHHHC T ss_conf 9997645 No 27 >pfam05405 Mt_ATP-synt_B Mitochondrial ATP synthase B chain precursor (ATP-synt_B). The Fo sector of the ATP synthase is a membrane bound complex which mediates proton transport. It is composed of nine different polypeptide subunits (a, b, c, d, e, f, g F6, A6L). Probab=98.95 E-value=1.6e-06 Score=60.22 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=97.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999554089999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 26 FWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNL 105 (176) Q Consensus 26 fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~ 105 (176) |+.+++|++|++++++.+.|++...+|+|.+.|.+.++.++..+.++-+..-++++.+...-.....+.+-.++.+.-.. T Consensus 17 ~~val~fi~f~~~~~K~~G~~i~~~lD~~~e~i~~~l~~~r~~~~~a~~~~ie~~k~~~~~~~~~~~l~~~~ke~~al~~ 96 (163) T pfam05405 17 TIVALCFIGFLIFVYKSLGPSIKEWLDKRIEKIQDELNQSRNLHEKALKERIEYVKKLQSVVEETKVLFEVSKETVALEA 96 (163) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999998108899999998999999999888878999999999999999999989999998246799777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999984159999-999999999421 Q gi|254781086|r 106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDAD-VQKILDRKRDGI 173 (176) Q Consensus 106 e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~-~~~~i~~~~~~i 173 (176) +....+-...+... +...++..-.--...-+..=..+..-+..++..++++.. .++.+.+.+.++ T Consensus 97 e~~~~~~~~~v~~e---vk~~Ld~~v~~e~~~r~~~Q~~~v~~v~~~V~~~i~~~~~~k~~l~~~I~~l 162 (163) T pfam05405 97 EAFERELQAALARE---IKSKLDTLVRKESSVRQREQDHLVNWVISSVLKELSPPKFQKKSLQESIADL 162 (163) T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999999999999---9999999999998999999999999999999987079167999999998860 No 28 >PRK13453 F0F1 ATP synthase subunit B; Provisional Probab=98.95 E-value=2.4e-06 Score=59.13 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=104.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999554089---9999999999999999999999----99999999999999999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLS---SIMEVRRNLISSDQEKMDSAKR----EVESMISSYEESLAIARAHAKEIIDK 96 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~---~~l~~R~~~I~~~l~~A~~~~~----eae~~~~~~e~~l~eak~ea~~ii~~ 96 (176) |++.++|.|++|+.++|+.+..-+. ..+..--+.-...-.+|+.... ....+..+....+.+|+.++..+..+ T Consensus 24 q~I~F~il~~ll~kf~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~a~~ea~~Ii~~A~~~Ae~~~~~ 103 (173) T PRK13453 24 QVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQ 103 (173) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999989899999999999999889999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999-984159999999999999 Q gi|254781086|r 97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDRKR 170 (176) Q Consensus 97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~~~ 170 (176) ...++....+..+.+++.+++.....+. .+...++...+..++..++.+ +..+..+..+++.+++.- T Consensus 104 ~~~~A~~ea~~i~~~A~~~Ie~ek~~a~-------~elr~ei~~lav~~A~Kil~~~l~~~~~~~LId~~i~e~G 171 (173) T PRK13453 104 IIHEANVRANGMIETAQSEINSQKERAI-------ADINNQVSELSVLIASKVLRKEISEQDQKALVDKYLKEAG 171 (173) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999999999999-------9999999999999999999867699989999999998617 No 29 >PRK13460 F0F1 ATP synthase subunit B; Provisional Probab=98.92 E-value=2.1e-06 Score=59.44 Aligned_cols=148 Identities=12% Similarity=0.122 Sum_probs=110.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH Q ss_conf 88598876889999999999999999999554089---99999999999999999999999999----999999999999 Q gi|254781086|r 14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLS---SIMEVRRNLISSDQEKMDSAKREVES----MISSYEESLAIA 86 (176) Q Consensus 14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~---~~l~~R~~~I~~~l~~A~~~~~eae~----~~~~~e~~l~ea 86 (176) |.+..-+| +++.++|.|++|+.++|+.+..-+. +.+..--+.-.+.-.+|+....+.+. +..+....+.+| T Consensus 14 ~n~~~~iw--~~i~F~il~~il~kf~~~pi~~~Ld~R~~~I~~~l~~Ae~~k~eA~~~~~e~e~~L~~A~~ea~~Ii~~A 91 (173) T PRK13460 14 VNPGLVVW--TLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEA 91 (173) T ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98779999--9999999999999996888999999999999988999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999-9841599999999 Q gi|254781086|r 87 RAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKI 165 (176) Q Consensus 87 k~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~ 165 (176) +.++..+.++...++....+....+++.+++....++..++ ..++...++.++..++.+ +..+.....+++. T Consensus 92 ~~~Ae~~~~~~~~~A~~ea~~i~~~A~~~Ie~ek~~A~~~l-------r~ei~~lav~~A~kii~~~ld~~~~~~lid~~ 164 (173) T PRK13460 92 KSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQL-------QNQIVEMTITIASKVLEKQLKKEDYKAFIETE 164 (173) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999-------99999999999999998775999899999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781086|r 166 LDRKR 170 (176) Q Consensus 166 i~~~~ 170 (176) +++.- T Consensus 165 i~elg 169 (173) T PRK13460 165 LAKLG 169 (173) T ss_pred HHHHH T ss_conf 98730 No 30 >PRK07352 F0F1 ATP synthase subunit B; Validated Probab=98.80 E-value=5e-06 Score=57.16 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=105.8 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHH Q ss_conf 645334689988598876889999999999999999999554089---999999999999999999999----9999999 Q gi|254781086|r 4 SSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLS---SIMEVRRNLISSDQEKMDSAK----REVESMI 76 (176) Q Consensus 4 ~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~---~~l~~R~~~I~~~l~~A~~~~----~eae~~~ 76 (176) |.++.+.|==|++-.+..++-+ |.|++|++++|+++..-+. ..|...-+.-.....+|+... .....+. T Consensus 9 ~e~~~~fg~n~~~l~~~iInf~----Il~~iL~~f~~~pi~~~L~~R~~~I~~~l~~Ae~~k~eA~~~l~e~e~~l~~a~ 84 (174) T PRK07352 9 TEASGGFGLNLNLLETNLINLA----IVIGLLYYFLRGFLGKILERRREAILQALKEAEERLRKAAQALAEAQQKLAQAQ 84 (174) T ss_pred HHHCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9763788989128999999999----999999999598999999999999999999999999999999999999999879 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999999-984 Q gi|254781086|r 77 SSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGF 155 (176) Q Consensus 77 ~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~ 155 (176) .+.+..+.+|+.++..+.++...++....+.....++.+++....++..+ ...++...+...+..++.+ +.. T Consensus 85 ~ea~~Ii~~A~~~a~~~~~~~~~~A~~e~e~i~~~A~~~Ie~e~~~a~~e-------lr~ei~~lAi~~A~kil~~~ld~ 157 (174) T PRK07352 85 QEAERIRADAKARAEAIRQEIEKQAIEDMARLKQTAAADLSAEAERVIAQ-------LRREAAELAIAKAESQLPGRLDE 157 (174) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCH T ss_conf 99999999999999999999999999999999999999999999999999-------99999999999999999877499 Q ss_pred HCCHHHHHHHHHHH Q ss_conf 15999999999999 Q gi|254781086|r 156 SVSDADVQKILDRK 169 (176) Q Consensus 156 ~~~~~~~~~~i~~~ 169 (176) +.....++..|++. T Consensus 158 ~~~~~lId~~I~~l 171 (174) T PRK07352 158 AAQQRLIDRSIANL 171 (174) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999974 No 31 >PRK13461 F0F1 ATP synthase subunit B; Provisional Probab=98.76 E-value=2.1e-05 Score=53.34 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=103.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999955408---9999999999999999999999999999----999999999999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESM----ISSYEESLAIARAHAKEIIDK 96 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~----~~~~e~~l~eak~ea~~ii~~ 96 (176) |++.++|.|++|+.++|+.+..-+ .+.+..--+.-...-..|+....+.+.. ..+....+.+|+.++..+..+ T Consensus 11 q~inF~il~~il~kf~~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~a~~ea~~Ii~~A~~~A~~~~~~ 90 (159) T PRK13461 11 TIINFIILLLILKHFFFDKIKAVIDSRQSEIDEKIEKADEDAEKARELKLKNERILKSAKEEGKKIVEEYKSKAENVYEE 90 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999978889999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999-9841599999999999 Q gi|254781086|r 97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDR 168 (176) Q Consensus 97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~ 168 (176) ...++....+..+.+++.+++....++. .+...++.+.+..++..++.+ +..+.+...++..+++ T Consensus 91 i~~~A~~ea~~i~~~A~~~Ie~e~~~a~-------~el~~ev~~la~~~A~kil~~~ld~~~~~~lid~~i~e 156 (159) T PRK13461 91 IVKEAHEEAESIIERAKLEIQREKEKAE-------YEIKNQAVDLAVLLSSKALEESIDESEHRELIKDFISK 156 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999-------99999999999999999998775999899999999978 No 32 >pfam00430 ATP-synt_B ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006 Probab=98.61 E-value=5.4e-05 Score=50.73 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=92.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH Q ss_conf 7688999999999999999999955408---9999999999999999999999999999999----99999999999999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESMISS----YEESLAIARAHAKE 92 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~----~e~~l~eak~ea~~ 92 (176) ||..|++.++|.|++|++++|..+..-+ .+.+..--+.......+|+....+.+..+.+ ....+.+++.++.. T Consensus 1 tl~~qlI~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~ea~~~~~~~e~~l~~a~~ea~~i~~~a~~~a~~ 80 (132) T pfam00430 1 TLETNLINFLILVGLLIYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQK 80 (132) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98889999999999999997988999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLV 150 (176) Q Consensus 93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~ 150 (176) ..+....++....+....+++.+++.....+..++. +++.+.+.+++..++ T Consensus 81 ~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~-------~e~~~la~~~aekil 131 (132) T pfam00430 81 LKEEILAEAQKDAERLLESARAEIEQEKEQALAELR-------QQVAALAVQIAEKLL 131 (132) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC T ss_conf 999999999999999999999999999999999999-------999999999997655 No 33 >PRK13454 F0F1 ATP synthase subunit B'; Provisional Probab=98.57 E-value=7e-05 Score=50.06 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=95.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5334689988598876889999999999999999999554089999999-999999999999999999999999999999 Q gi|254781086|r 6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLA 84 (176) Q Consensus 6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R-~~~I~~~l~~A~~~~~eae~~~~~~e~~l~ 84 (176) +++..++-|+| |-+=++ .|-.=|+.+++.|++-||++. +++=-| ...+.+.-+.-..--++|+++..+.++ T Consensus 12 ~~~~~~~~~Gm-PQld~~-~f~sQiFWl~i~F~ily~vl~---k~~lPrI~~vLe~R~~~I~~dL~~Ae~~k~eAe~--- 83 (181) T PRK13454 12 AADAAASAPGM-PQLDFD-TFPNQIFWLLVTLVAIYFVLT---RVALPRIGAVLAERQGTITNDLAAAEELKQKAVE--- 83 (181) T ss_pred HHHHCCCCCCC-CCCCCH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- T ss_conf 76503457999-999902-407899999999999999999---9999888989999999999889999999999999--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999999999999999999999999999-------9999999999998415 Q gi|254781086|r 85 IARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI-------VGEVTKDLVRKLGFSV 157 (176) Q Consensus 85 eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~-------a~~~a~~i~~kl~~~~ 157 (176) +..+....+.+|+.++..++.+.+.+++.+++....+++.+++.....+..+|... +..++..++..|...+ T Consensus 84 -~~~~ye~~L~~Ar~eA~~ii~eAr~~a~~~~~~~~~~a~~el~~~i~~AE~~I~~~K~~Am~~i~~iA~d~a~~Iv~kL 162 (181) T PRK13454 84 -AEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL 162 (181) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf -9999999999999999999999999999999999999999999999999999999999889999999999999999998 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 99999999999994 Q gi|254781086|r 158 SDADVQKILDRKRD 171 (176) Q Consensus 158 ~~~~~~~~i~~~~~ 171 (176) ........|...++ T Consensus 163 ~gk~~~~~v~aaV~ 176 (181) T PRK13454 163 GGKADAAAVDAAVA 176 (181) T ss_pred HCCCCHHHHHHHHH T ss_conf 57587788999999 No 34 >PRK05759 F0F1 ATP synthase subunit B; Validated Probab=98.53 E-value=9.5e-05 Score=49.22 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=99.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999955408---99999999999999999999999999999----99999999999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESMI----SSYEESLAIARAHAKEIIDK 96 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~~----~~~e~~l~eak~ea~~ii~~ 96 (176) |++.++|.+++|+++++..+..-+ ...+..--+.....-.+|+....+.+..+ .+....+.+++.++.....+ T Consensus 10 ~~I~F~il~~ll~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~~a~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~ 89 (156) T PRK05759 10 QLIAFLILVWFCMKFVWPPIMKALEERQKKIADGLAAAERAKKELEAAQAKAEEQLAEARAEAAEIIEQAKKRAAQIIEE 89 (156) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999978789999999999999899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999-9841599999999999 Q gi|254781086|r 97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDR 168 (176) Q Consensus 97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~ 168 (176) ...++....+.....++.+++....++..+ ...++.+.+..++..++++ +..+..+..+++.|++ T Consensus 90 ~~~~a~~e~~~~~~~a~~~I~~e~~~a~~~-------l~~~i~~la~~~a~kil~~~l~~~~~~~lid~~i~~ 155 (156) T PRK05759 90 AKAEAEAEAARIKAQAQAEIEQERKRAREE-------LRKQVADLAVAGAEKILGRELDAAAHSDLIDKLIAE 155 (156) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999-------999999999999999988677999899999998743 No 35 >CHL00118 atpG ATP synthase CF0 B' subunit; Validated Probab=98.51 E-value=7.7e-05 Score=49.80 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=72.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999554089999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 26 FWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNL 105 (176) Q Consensus 26 fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~ 105 (176) .|+.+.. |-|+++..++++-+-+ -=...+...-+..+..-++|+....+ ......+....+.+++.++..++ T Consensus 23 ~Tl~~q~-i~FliL~~lL~kf~~~---Pi~~~ld~R~~~I~~~l~~Ae~~~~e----a~~~~~eye~~L~~Ar~Ea~~ii 94 (156) T CHL00118 23 ATLPLMA-LQFLLLMVLLNAIFYK---PIGKILDEREEYIRSNLAKASSKLAK----ANELTAQYEEQLSKARKEAQLLI 94 (156) T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999-9999999999999898---99999999999999889999999999----99999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999 Q gi|254781086|r 106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDL 149 (176) Q Consensus 106 e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i 149 (176) ++.+.+++...+..+.+++.+++....++..++...-...-..+ T Consensus 95 ~~A~~~a~~~~~~i~~~A~~ea~~~i~~A~~eIe~ek~~a~~el 138 (156) T CHL00118 95 AQSQKEAQEIVQEELKQAQKNAESLVEEATKQLEIQKEQALKSL 138 (156) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999 No 36 >PRK13455 F0F1 ATP synthase subunit B; Provisional Probab=98.49 E-value=0.00012 Score=48.61 Aligned_cols=137 Identities=12% Similarity=0.163 Sum_probs=93.7 Q ss_pred HHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999-99999999955408999---999999999999999999999----999999999999999999999999999999 Q gi|254781086|r 30 IIFG-IFYWVTHRFILPRLSSI---MEVRRNLISSDQEKMDSAKRE----VESMISSYEESLAIARAHAKEIIDKVVAAA 101 (176) Q Consensus 30 I~F~-il~~il~~~~~~pi~~~---l~~R~~~I~~~l~~A~~~~~e----ae~~~~~~e~~l~eak~ea~~ii~~a~~~a 101 (176) |+++ ++|+.++..+..-+-+= +..--+.-..--++|+....+ ......+.++.+.+|+.++..+.++++.++ T Consensus 38 if~~iL~~~~vp~~I~~~LD~R~~~I~~dLdeAe~lreEAe~lLaeye~~l~~A~~EA~~Ii~~Ak~~A~~~~~~~~~~a 117 (184) T PRK13455 38 LFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVANARDEAQAAAEQAKADL 117 (184) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999955899999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999-984159999999999999421 Q gi|254781086|r 102 EQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDRKRDGI 173 (176) Q Consensus 102 ~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~~~~~i 173 (176) ++.++.....++.++++...++..+|. +.+...+...+..++.+ +..+..+..+++.|++.-..+ T Consensus 118 ~~~i~r~~~~Ae~~I~~~k~~A~~eir-------~~a~~lAi~aA~kii~~~l~~~~~~~LId~~I~el~~~L 183 (184) T PRK13455 118 EASIARRLAAAEDQIASAEAAAVRAVR-------DRAISVAVAAAADVIAKQMTAAEANALIDEAIKEVEAKL 183 (184) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999998888-------999999999999999865799989999999999997655 No 37 >PRK09174 F0F1 ATP synthase subunit B'; Validated Probab=98.41 E-value=0.00018 Score=47.45 Aligned_cols=150 Identities=9% Similarity=0.140 Sum_probs=93.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88598876889999999999999999999554089999999-99999999999999999999999999999999999999 Q gi|254781086|r 14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE 92 (176) Q Consensus 14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R-~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ 92 (176) -+| |-+=+ ..|-.-|+.+++.|.+-||+.. +++--| ...+.+.-+....--++|+++..+.+..+.+- .. T Consensus 42 gg~-Pqld~-~t~~sQifWL~I~F~~lY~~~s---k~~lPrI~~vLe~R~~~I~~DLe~Ae~lk~EAe~~~a~Y----e~ 112 (204) T PRK09174 42 GVF-PPFDS-THYASQLLWLAITFGLFYLFLS---RVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAY----EQ 112 (204) T ss_pred CCC-CCCCH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH T ss_conf 999-99983-4508999999999999999999---997603777999999999879999999999999999999----99 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCHHHH-HH Q ss_conf 9999999999999999999999999999999999999999999999999-------999999999999841599999-99 Q gi|254781086|r 93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI-------VGEVTKDLVRKLGFSVSDADV-QK 164 (176) Q Consensus 93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~-------a~~~a~~i~~kl~~~~~~~~~-~~ 164 (176) .+.+++.++..++.+.+.+++.+++....+.+.+|+.....+..+|... +..++.+++..+...+....+ .. T Consensus 113 ~LaeAR~eA~~Ii~~Ar~~a~~~~e~~~a~~ea~L~~kia~AE~~I~~~r~~Al~~V~~IA~d~A~~iV~~L~G~~v~~~ 192 (204) T PRK09174 113 ELAQARSKAASIAQAAREAAKAKAEAERAEIEASLEKKLKEAEERIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKA 192 (204) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99999999999999999999999999999999999999999999999999987999999999999999999868999999 Q ss_pred HHHHHHHH Q ss_conf 99999942 Q gi|254781086|r 165 ILDRKRDG 172 (176) Q Consensus 165 ~i~~~~~~ 172 (176) -|...++. T Consensus 193 ~v~~aV~a 200 (204) T PRK09174 193 SVSAAVKA 200 (204) T ss_pred HHHHHHHH T ss_conf 99999987 No 38 >CHL00019 atpF ATP synthase CF0 B subunit Probab=98.34 E-value=0.00028 Score=46.38 Aligned_cols=134 Identities=10% Similarity=0.122 Sum_probs=81.6 Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999955408-------999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 29 AIIFGIFYWVTHRFILPRL-------SSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAA 101 (176) Q Consensus 29 ~I~F~il~~il~~~~~~pi-------~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a 101 (176) +|.+++|+++++.++..-+ .+.|++=++.-.+.-..-.+.+.+..++..+.++.+.+|+..+..+..+...++ T Consensus 35 ~Ivi~iL~~f~~~~L~~~L~~R~~~I~~~I~eAE~~~~eA~~~L~e~~~~L~~A~~eA~~I~~~A~~~ae~~k~~i~~~a 114 (184) T CHL00019 35 SVVLGVLIYFGKGVLSDLLDNRKQRILNTIRNSEERREEAIEKLEKARARLRQAEIEADEIRVNGYSEIEREKLNLINST 114 (184) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999995999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999-98415999999999999 Q gi|254781086|r 102 EQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDRK 169 (176) Q Consensus 102 ~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~~ 169 (176) ....+.....++.+++....++..+ ...++...+...+...+.+ |..+....-++..|+.. T Consensus 115 ~~e~erl~~~A~~~I~~E~~kA~~e-------lr~ev~~lAl~~a~k~L~~~Ld~~~q~~LId~~I~~L 176 (184) T CHL00019 115 YEDLERLENYKNETIRFEQQRAINQ-------VRQQVFQLALQRALGTLNSCLNNELHLRTIDANIGLL 176 (184) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999-------9999999999999999986649999999999999987 No 39 >PRK08475 F0F1 ATP synthase subunit B; Validated Probab=98.34 E-value=0.00018 Score=47.50 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=75.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 688999999999999999999955408---99999999999999999999999----99999999999999999999999 Q gi|254781086|r 21 FLSQFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKR----EVESMISSYEESLAIARAHAKEI 93 (176) Q Consensus 21 f~~q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~----eae~~~~~~e~~l~eak~ea~~i 93 (176) |+.-+++++|.++|+||++++++..-+ ...+..+-+.++..+.+|..... +.+.+..+++..+..|+.++..+ T Consensus 27 ii~r~iNf~I~~gIL~yf~~kpi~~~l~~R~~~I~~~L~eae~~~~eA~~~l~~~~~kLe~Ak~eA~~Iie~Akkeae~~ 106 (170) T PRK08475 27 IIERTINFLIFVGILWYFAAKPIKNFYKSRINSISKRLEEIQAKLKESKEKKKDALKKLEEAKEKAELIVETAKKEAYIL 106 (170) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 59999999999999999928789999998999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999 Q gi|254781086|r 94 IDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID 128 (176) Q Consensus 94 i~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~ 128 (176) ..+-..+++..++.....++..++.....+..++- T Consensus 107 kq~I~~~a~~eie~L~~~a~e~i~~E~rka~~el~ 141 (170) T PRK08475 107 TQKIEKQTKDDIENLIKSFEEQMDFEVRKIKRELV 141 (170) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999 No 40 >TIGR01144 ATP_synt_b ATP synthase F0, B subunit; InterPro: IPR005864 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex. Probab=98.32 E-value=0.00031 Score=46.04 Aligned_cols=137 Identities=9% Similarity=0.073 Sum_probs=104.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999995540899999999--------9999999999999999999999999999999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR--------NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIID 95 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~--------~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~ 95 (176) |++.++|...+++=++|..+.. +.+.-.+.. ..=.+.-..-.........+..+....+..|+.....+.+ T Consensus 1 Q~~~F~llv~f~~KY~w~Pl~~-~~~~R~~~IA~~L~~AE~~~~~~~~~~~~~~~~l~~AK~~A~~ii~~A~k~~~~~~e 79 (147) T TIGR01144 1 QLISFILLVWFCKKYVWPPLAK-AIETRQKKIADDLASAERAKKEAALAQKEAQVLLKEAKDEAQEIIENANKRGSEILE 79 (147) T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9799999999998862379999-999889985988999999888899999898899998888888999998788888699 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999-9841599999999999 Q gi|254781086|r 96 KVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILDR 168 (176) Q Consensus 96 ~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~~ 168 (176) +++.+|....+.....++.|++....+| +.....+|-..++.++..++.+ +.......-++.+|.+ T Consensus 80 e~~~~A~~e~~ki~~~A~~EI~~~~~~A-------r~~Lr~~Va~L~V~~AeKii~~~iD~~~~~d~id~~~~~ 146 (147) T TIGR01144 80 EIKAEAREEREKILASARAEIEAEKERA-------REELRKQVADLAVAGAEKIIEREIDKQAQKDLIDKLVAE 146 (147) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999989889999998844599999999-------999999999999999999998878999988899998731 No 41 >PRK08476 F0F1 ATP synthase subunit B'; Validated Probab=98.30 E-value=0.00035 Score=45.75 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=53.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 64 KMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVG 143 (176) Q Consensus 64 ~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~ 143 (176) ..+..-+.|+.... ...+++.+...++.+|+.++..++++.+.+++++.+..+.+++.+++..+..+..+|..... T Consensus 42 ~I~~~l~~A~~~~~----ea~~l~~e~e~~L~~Ar~ea~~ii~~A~~~A~~~~~~~~~~Ar~eae~~~~~a~~~ie~ek~ 117 (141) T PRK08476 42 SIKNDLEKVKTNSS----ESVEINAEIEAILKNAREEANKIRQEAIAAAKEEAEQKIEAKKEELESKYEAFAQQLANQKQ 117 (141) T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988999999899----99999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254781086|r 144 EVTKDLVRKL 153 (176) Q Consensus 144 ~~a~~i~~kl 153 (176) .....+-+.+ T Consensus 118 ~a~~~L~~qv 127 (141) T PRK08476 118 ELKEQLLSQM 127 (141) T ss_pred HHHHHHHHHH T ss_conf 9999999889 No 42 >MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional Probab=98.27 E-value=2.8e-06 Score=58.68 Aligned_cols=50 Identities=28% Similarity=0.562 Sum_probs=45.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98859887688999999999999999999955408999999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQ 62 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l 62 (176) |||||..+|+.|.+|.+|..+++|.++...++|++...+--|.....+.. T Consensus 1 MPQLD~~tyltQY~w~li~l~~lf~llv~~ILP~iq~ql~~R~~~~~g~~ 50 (71) T MTH00169 1 MPQLDTVTYLTQYIWTLIALFFLFSLLVNTILPWLQQQLVIRSKIVSGLE 50 (71) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98414999999999999999999999999981899999999999987641 No 43 >PRK06568 F0F1 ATP synthase subunit B; Validated Probab=98.24 E-value=0.00046 Score=45.00 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=91.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHH Q ss_conf 98859887688999999999999999999955408999999999999999---99999999999999----999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQ---EKMDSAKREVESMI----SSYEESLAI 85 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l---~~A~~~~~eae~~~----~~~e~~l~e 85 (176) |.=+||+||..=. ++|+|+++|+-+++....-+-.-+.+=+..|.+.. ++|+....+.+..+ .+..+.+.+ T Consensus 1 ~~fiDatFWVaIS--F~IFv~Liy~k~pk~I~~~LD~kI~eIK~~ideAekLkeEAk~lL~e~ekKi~~~~~e~~emI~~ 78 (154) T PRK06568 1 MNFLDESFWLAVS--FVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEE 78 (154) T ss_pred CCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9975406999999--99999999987589999889999999999998999878999999999999998789999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999 Q gi|254781086|r 86 ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ 131 (176) Q Consensus 86 ak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k 131 (176) |+.++..++.+...+..+..+.....+.+.+.++..+|-++|..+- T Consensus 79 Ak~~aEk~i~~~~kk~~~~~e~kkk~A~~kI~Q~K~~AikdIkn~~ 124 (154) T PRK06568 79 SNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEF 124 (154) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6899999999999999999998898699999999999999999999 No 44 >COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion] Probab=98.16 E-value=0.0007 Score=43.90 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=102.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH Q ss_conf 85988768899999999999999999995540899---9999999999999999999----9999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSS---IMEVRRNLISSDQEKMDSA----KREVESMISSYEESLAIAR 87 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~---~l~~R~~~I~~~l~~A~~~----~~eae~~~~~~e~~l~eak 87 (176) .+++..++.+++-++|.++++++++|+.+.+-+.+ .+..--+.....-.+++.. ..+.+.+..++...+..|+ T Consensus 3 ~~~~~~~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~ 82 (161) T COG0711 3 NFNDTNILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAK 82 (161) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 52124799999999999999999968679999999999999889999998999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999-98415999999999 Q gi|254781086|r 88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKIL 166 (176) Q Consensus 88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i 166 (176) .++..+..+.+.+++...+.....+..+++....++..++.. ++...+..++..+..+ +......+.++..+ T Consensus 83 ~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~-------~~~~la~~~aekll~~~~~~~~~~~lid~~~ 155 (161) T COG0711 83 KEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRA-------EVAELAVAIAEKLLGKKVDEAAQKDLIDAFI 155 (161) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998999999999999999999999999999999999999-------9999999999999898757898999999999 Q ss_pred HH Q ss_conf 99 Q gi|254781086|r 167 DR 168 (176) Q Consensus 167 ~~ 168 (176) .+ T Consensus 156 ~~ 157 (161) T COG0711 156 AE 157 (161) T ss_pred HH T ss_conf 86 No 45 >PRK07353 F0F1 ATP synthase subunit B'; Validated Probab=98.07 E-value=0.001 Score=42.85 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=71.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999955408---9999999999999999999999999999----999999999999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESM----ISSYEESLAIARAHAKEIIDK 96 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~----~~~~e~~l~eak~ea~~ii~~ 96 (176) |++.++|.|++|..++|+.+..-+ ...+..--+.....-.+|+....+.+.. ..+....+.+++.++....++ T Consensus 11 q~i~Flil~~il~k~l~~Pi~~~ld~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~ea~~ii~~A~~~a~~~~~~ 90 (140) T PRK07353 11 MAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKEKLAEAEKLEAQYEQQLASARKQAQQVIAEAEAEADKLYAE 90 (140) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999988889999999999998889999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLV 150 (176) Q Consensus 97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~ 150 (176) ...++....+..+.+++.+++....++..++. +++.+.+..++..++ T Consensus 91 ~~~~A~~e~~~~~~~A~~~Ie~ek~~a~~~l~-------~ev~~la~~ia~Kil 137 (140) T PRK07353 91 ALAEAQAEAQASKEKARREIEQQKQSALAQLE-------QQVDALSRQILEKLL 137 (140) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999-------999999999999876 No 46 >MTH00025 ATP8 ATP synthase F0 subunit 8; Validated Probab=97.96 E-value=2e-05 Score=53.45 Aligned_cols=49 Identities=27% Similarity=0.618 Sum_probs=43.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9885988768899999999999999999995540899999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSD 61 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~ 61 (176) |||||.++|.+|.-|.++.+..+++++..+++|.|..-.-=|+.-+..+ T Consensus 1 MPQLd~~~yltQY~Wtl~~Lf~L~~ll~~~ilP~ik~n~~IR~~l~~~~ 49 (70) T MTH00025 1 MPQLDTTTYLTQYRWTLIVLFLLLFFLVFFVLPTIKRNWLIRKSLMKKG 49 (70) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9850277989999999999999999999999899987499999998068 No 47 >CHL00167 consensus Probab=97.77 E-value=0.0036 Score=39.50 Aligned_cols=132 Identities=8% Similarity=0.118 Sum_probs=65.8 Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999955408-------999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 29 AIIFGIFYWVTHRFILPRL-------SSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAA 101 (176) Q Consensus 29 ~I~F~il~~il~~~~~~pi-------~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a 101 (176) +|.+++|||+++.|+..-+ .+.+.+=.+...+.-+.-.+++.+..++..+.++...+++..+..+..+....+ T Consensus 37 ~ivigiL~~fg~~~L~~~L~~Rke~I~~~I~eAE~r~~eA~~~L~eak~~L~qA~~eA~~Ir~~a~~~ae~~k~~i~~~a 116 (182) T CHL00167 37 LILLSGLIYLGKNFLGSSLEERQQKVLEAIQESEERLEQANSRLSESEKQLAQAQIVIEQIKKEAEKTARKVKSSILAQG 116 (182) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999984676898999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999-984159999999999 Q gi|254781086|r 102 EQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDADVQKILD 167 (176) Q Consensus 102 ~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~~~~~~i~ 167 (176) ....+.....++.+++....++..++. .++...+..-+...+.+ +..+.-...++..|. T Consensus 117 ~~d~erl~~~a~~~I~~E~~ra~~qlr-------~qv~~lAl~ka~~~L~~~Ld~~~q~~lId~~I~ 176 (182) T CHL00167 117 KLDIERLTNNGKSSIETAEKQIKKQIQ-------QQITFLAIKRVTLQLENQMTPNLQLRIIDNNIA 176 (182) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 999999999999899999999999999-------999999999999998866499999999999999 No 48 >PRK06569 F0F1 ATP synthase subunit B'; Validated Probab=97.73 E-value=0.0041 Score=39.12 Aligned_cols=133 Identities=11% Similarity=0.149 Sum_probs=81.7 Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999-9999999999999554089999999-9999999999999999999999999999999999999999999999999 Q gi|254781086|r 26 FWLA-IIFGIFYWVTHRFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ 103 (176) Q Consensus 26 fw~~-I~F~il~~il~~~~~~pi~~~l~~R-~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~ 103 (176) ||.- |+.+++.|.+-|++.. +++--| ..-+...-+.-..--++|+....+.+.. ..+....+.+|+.++.+ T Consensus 8 ~~~sQifWL~itF~~ly~~~s---k~~lPri~~~le~R~~~I~~dl~~A~~~k~eae~~----~~~ye~~l~~Ak~eA~~ 80 (157) T PRK06569 8 TYYSQIFWLIVTFGLLYIFVY---KFITPKAEEIFNNRQTNIQDNITQADTLTLEVEKL----NKYYNEEIDKTNTEIDR 80 (157) T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH T ss_conf 408999999999999999999---99860487799989999998899999999999999----99999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999998415999999999 Q gi|254781086|r 104 NLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKIL 166 (176) Q Consensus 104 ~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i 166 (176) +..+.+.+++.+++......+++|+..-.++..++.......-. -+.++..++....+.+++ T Consensus 81 i~~ea~~~l~~e~~~k~~~le~~l~~~i~~aekeI~~~k~~a~~-~i~~ia~eia~~iI~kl~ 142 (157) T PRK06569 81 LKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRT-NKSEAIIKLAVNIIEKIT 142 (157) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999998787-699999999999999986 No 49 >PRK01005 V-type ATP synthase subunit E; Provisional Probab=97.68 E-value=0.0049 Score=38.65 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=67.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999999-999 Q gi|254781086|r 69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGE-VTK 147 (176) Q Consensus 69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~-~a~ 147 (176) ++-.++..++.+..+.+|+.++..|+++|+.+++.++. +++++++......+..+...-+++...+++.+.. +.. T Consensus 19 ~EGVe~g~~eA~~II~~A~~qA~~Ii~~Ae~eAe~il~----~A~keAe~~~~~~~s~L~~A~rqav~aLk~~i~~~if~ 94 (208) T PRK01005 19 EETLKPAEDEAGAIVHNAKEQAKRIIEEAQEEAQQIIR----SAEETADQKLKQGESALVQAGKRSLESLKQAVENKIFR 94 (208) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98777899999999999999999999999999999999----99999999999679999999999999999999999999 Q ss_pred HHHHH-HHHHC-CHHHHHHHHHHHHHHHH Q ss_conf 99999-98415-99999999999994210 Q gi|254781086|r 148 DLVRK-LGFSV-SDADVQKILDRKRDGID 174 (176) Q Consensus 148 ~i~~k-l~~~~-~~~~~~~~i~~~~~~i~ 174 (176) ..+.. +.... +.....++|...++.++ T Consensus 95 ~~l~~~V~~~~~d~e~l~~LI~e~v~~~~ 123 (208) T PRK01005 95 ESLVEWLEHVLTDPEVSAKLVQALVQAIE 123 (208) T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 99999999986589999999999999864 No 50 >PRK02292 V-type ATP synthase subunit E; Provisional Probab=97.59 E-value=0.0064 Score=37.93 Aligned_cols=99 Identities=19% Similarity=0.096 Sum_probs=56.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999999-9999 Q gi|254781086|r 74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKD-LVRK 152 (176) Q Consensus 74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~-i~~k 152 (176) .+.++.+..+.+|+.++..|++++..++.++.+....+++.+++++..+........-+...-..++.+.+-+.. ...+ T Consensus 13 ~A~~ea~~I~~eA~~ea~~I~~~a~~~ae~~~~~~~~~a~~ea~~~~~r~~ssA~Le~r~~~L~ak~e~i~~v~~~a~~~ 92 (187) T PRK02292 13 EARAEVSEIRAEADERAEEIIAEAEADAKDILGDAEAEAEEDIEQLRQQEISSANLEAKRARLNARKEVLEEVYNQVEDA 92 (187) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999998779999999999999999999999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHH Q ss_conf 984159999999999999421 Q gi|254781086|r 153 LGFSVSDADVQKILDRKRDGI 173 (176) Q Consensus 153 l~~~~~~~~~~~~i~~~~~~i 173 (176) | .+++.+....++...++.. T Consensus 93 L-~~l~~~~~~~llk~ll~~~ 112 (187) T PRK02292 93 I-ASLPGDKREELLKNLLDAD 112 (187) T ss_pred H-HCCCCHHHHHHHHHHHHHC T ss_conf 8-6689115999999999874 No 51 >PRK01005 V-type ATP synthase subunit E; Provisional Probab=97.55 E-value=0.006 Score=38.12 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999 Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) ..+.+..+.+|+.++..|+.+|+.+++.........++.-..+.+......| T Consensus 37 ~~qA~~Ii~~Ae~eAe~il~~A~keAe~~~~~~~s~L~~A~rqav~aLk~~i 88 (208) T PRK01005 37 KEQAKRIIEEAQEEAQQIIRSAEETADQKLKQGESALVQAGKRSLESLKQAV 88 (208) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999679999999999999999999 No 52 >PRK01558 V-type ATP synthase subunit E; Provisional Probab=97.43 E-value=0.011 Score=36.56 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=62.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKD 148 (176) Q Consensus 69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~ 148 (176) ++-.++..++.+..+.+|+.++..|+++|+.+++.++.+ ++++++.....++..+...-+.+...+++.....-.. T Consensus 14 ~eGVekg~~eA~~IIa~A~~~A~~Iv~~Ae~eAe~i~~~----AekeA~~~k~~~~~aL~~A~rd~ll~lk~~i~~~~~~ 89 (198) T PRK01558 14 KDGLEEAERLANEIILNAKEEAEAIVLKAEEEAKELKAK----AEKEANDYKRHSLEASRQAIRDLIIGFEKNLKSLFKA 89 (198) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 987889999999999999999999999999999999999----9998999999679999999999999999999999999 Q ss_pred HHHH-HHHHCCHHHHHHHHHHHHHH Q ss_conf 9999-98415999999999999942 Q gi|254781086|r 149 LVRK-LGFSVSDADVQKILDRKRDG 172 (176) Q Consensus 149 i~~k-l~~~~~~~~~~~~i~~~~~~ 172 (176) .+.. +....+++...++|-...+. T Consensus 90 ~v~~~v~~~~d~~~L~~lIl~v~~~ 114 (198) T PRK01558 90 ALKDEVAEVYDSNFLRELIIRVVDS 114 (198) T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9999999863899999999999875 No 53 >pfam05933 Fun_ATP-synt_8 Fungal ATP synthase protein 8 (A6L). This family consists of fungus specific ATP synthase protein 8 (EC:3.6.3.14). The family may be related to the ATP synthase protein 8 found in other eukaryotes pfam00895. Probab=97.32 E-value=0.00024 Score=46.73 Aligned_cols=43 Identities=23% Similarity=0.497 Sum_probs=40.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9885988768899999999999999999995540899999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR 55 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~ 55 (176) ||||-|=+|.+|+.|..+.+.+++++..++++|.+.+..-.|. T Consensus 1 MPQLvPfyf~N~i~~~f~~~~il~y~~SkyiLP~~~rl~vsR~ 43 (47) T pfam05933 1 MPQLVPFYFINQIVFTFAIISILLYLFSKYILPRIVRLYVSRL 43 (47) T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9854216763058899999999999999987899999999998 No 54 >TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase. Probab=97.29 E-value=0.015 Score=35.60 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=46.0 Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHH Q ss_conf 9999999999999955408---999999999999999999999999999999999----9999999----9999999999 Q gi|254781086|r 29 AIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESMISSYE----ESLAIAR----AHAKEIIDKV 97 (176) Q Consensus 29 ~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e----~~l~eak----~ea~~ii~~a 97 (176) +|.+.+|..++|+.+..-| .+.+...-..-...-.+|+..+.+.+...++.+ ..+.+|+ .+...++.++ T Consensus 16 liL~~lL~rFl~~Pv~~~i~~R~~~I~~~l~~A~~~~~eA~~~~~~~e~~~~~~~~e~~~~l~~A~~eAe~er~~ll~~A 95 (246) T TIGR03321 16 LILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEA 95 (246) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999996889999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254781086|r 98 VAAAEQNLEFQREVFEKDLLHKLSNAQ 124 (176) Q Consensus 98 ~~~a~~~~e~~~~~a~~ei~~~~~~a~ 124 (176) +.+++.........+..+-........ T Consensus 96 r~eae~~r~~~~~~l~~E~~~~~~~l~ 122 (246) T TIGR03321 96 REEADEIREKWQEALRREQAALSDELR 122 (246) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999 No 55 >PRK13428 F0F1 ATP synthase subunit delta; Provisional Probab=97.23 E-value=0.018 Score=35.17 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=103.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8768899999999999999999995540899---9999---999999999999-99999999999999999999999999 Q gi|254781086|r 19 STFLSQFFWLAIIFGIFYWVTHRFILPRLSS---IMEV---RRNLISSDQEKM-DSAKREVESMISSYEESLAIARAHAK 91 (176) Q Consensus 19 ~~f~~q~fw~~I~F~il~~il~~~~~~pi~~---~l~~---R~~~I~~~l~~A-~~~~~eae~~~~~~e~~l~eak~ea~ 91 (176) ++|++|++-|+|.|++|+.+++-.+-+-+.. .|+. |-..-+..++.+ ++.+.....+..++.....+|+.++. T Consensus 2 ~~fIgqLI~Faii~f~~~KfVvP~~~k~l~eR~daIeggie~Ae~Aqaea~~al~~y~~qLaeAr~EAa~IreeAr~~~~ 81 (445) T PRK13428 2 STFIGQLIGFAVIVFLVVRFVVPPVRRLMAAQQDAVRQQLADSATAADKLAEADQAHAKAVEDAKAEAHRVVEEARTDAE 81 (445) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 13999999999999999999852799999999999998899999999999999999999999999999999999998899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHH-HHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999-98415999-99999999 Q gi|254781086|r 92 EIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK-LGFSVSDA-DVQKILDR 168 (176) Q Consensus 92 ~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k-l~~~~~~~-~~~~~i~~ 168 (176) .|+.+.+.++..+.+.++...+.+++...+++-.+ ...++...+++++.+++.. +.+....+ .++..+++ T Consensus 82 ~I~ae~raqA~~Ea~RI~~~g~~Qiea~Rqq~v~~-------LR~e~G~~av~lA~~iVge~l~D~a~qs~tVDRFL~e 153 (445) T PRK13428 82 RIAEQLRAQADVEAERIKVQGARQVQLLRQQLIRQ-------LRLELGHESVRQARELVRNHVADPAQQSATVDRFLDE 153 (445) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999998888999999998999999999999999-------9999879999999999865404388876159888999 No 56 >PRK03963 V-type ATP synthase subunit E; Provisional Probab=96.70 E-value=0.052 Score=32.34 Aligned_cols=51 Identities=18% Similarity=0.063 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999 Q gi|254781086|r 75 MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQN 125 (176) Q Consensus 75 ~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~ 125 (176) +.++.+..+.+|+.++..|+.++..+++...+....+++.+++........ T Consensus 15 A~~~a~~Il~eA~~eae~I~~~a~~~a~~~~~~~~~k~~~ea~~~~~r~~s 65 (198) T PRK03963 15 AEQKIEYILSEARKEAEKIKEEARRRAEARAEWILRRAKTQAELEKQRIIA 65 (198) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999999999999999 No 57 >PRK01558 V-type ATP synthase subunit E; Provisional Probab=96.68 E-value=0.054 Score=32.22 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999 Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID 128 (176) Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~ 128 (176) ..+.+..+.+|+.++..|+.+|+.++..........++.-....+...+..|. T Consensus 32 ~~~A~~Iv~~Ae~eAe~i~~~AekeA~~~k~~~~~aL~~A~rd~ll~lk~~i~ 84 (198) T PRK01558 32 KEEAEAIVLKAEEEAKELKAKAEKEANDYKRHSLEASRQAIRDLIIGFEKNLK 84 (198) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999989999996799999999999999999999 No 58 >PRK02292 V-type ATP synthase subunit E; Provisional Probab=96.67 E-value=0.054 Score=32.20 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=42.2 Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999----999999999999999999999999999999999-99999999999999999999999999 Q gi|254781086|r 78 SYEESLAIARAHAKEI----IDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNE-IDDMQKKASQEVYSIVGEVTKDLVRK 152 (176) Q Consensus 78 ~~e~~l~eak~ea~~i----i~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~-I~~~k~~a~~ei~~~a~~~a~~i~~k 152 (176) +.++.+.+|+.++..+ ..++..++..........++.++.+.+-.++++ |+.....+...|.+...+-...++.. T Consensus 28 ea~~I~~~a~~~ae~~~~~~~~~a~~ea~~~~~r~~ssA~Le~r~~~L~ak~e~i~~v~~~a~~~L~~l~~~~~~~llk~ 107 (187) T PRK02292 28 RAEEIIAEAEADAKDILGDAEAEAEEDIEQLRQQEISSANLEAKRARLNARKEVLEEVYNQVEDAIASLPGDKREELLKN 107 (187) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999999999999999999999999999999998779999999999999999999999999866891159999999 Q ss_pred H Q ss_conf 9 Q gi|254781086|r 153 L 153 (176) Q Consensus 153 l 153 (176) + T Consensus 108 l 108 (187) T PRK02292 108 L 108 (187) T ss_pred H T ss_conf 9 No 59 >PRK00106 hypothetical protein; Provisional Probab=96.67 E-value=0.055 Score=32.19 Aligned_cols=85 Identities=11% Similarity=0.018 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999999999955408999999999999999999999-999999999999999999999999999999999 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSA-KREVESMISSYEESLAIARAHAKEIIDKVVAAA 101 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~-~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a 101 (176) .-++..+|.|++-|++.+ ..+..++..+...+..|+.. ..-..++..+.+..+.+|+.++..+..++.-++ T Consensus 6 ~~i~~~liG~~iG~~~~~--------~~~~~~k~~~~~~~~~a~~~A~~~~~~Ae~eA~~i~~~A~~eae~~kke~~leA 77 (535) T PRK00106 6 LLVVSALIGLVLGYALIS--------IKLKSAKEAAELTLLNAEQEAVNLRGKAEVDAEHIKKTAKRESKALRKELLLEA 77 (535) T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998999999--------999888876898999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254781086|r 102 EQNLEFQREVFEKD 115 (176) Q Consensus 102 ~~~~e~~~~~a~~e 115 (176) +......+.+++.+ T Consensus 78 Kee~~~~r~e~e~e 91 (535) T PRK00106 78 KEEARKYREEIEQE 91 (535) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 60 >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Probab=96.54 E-value=0.067 Score=31.64 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=42.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 51 MEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 51 l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) ++..+.......++++..+++++...++|++.+.+.+.+..+++.+++.++.+.+.+++.+++.-+.... T Consensus 523 l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~ea~~~i~~a~~e~~~~i~~lk 592 (780) T PRK00409 523 LEELERELEEKAEEAEKLLKEAEKLKEELEEQKEKLQEREDKLLLEAEEEAQQAIKEAKKEAAEIIKELR 592 (780) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999 No 61 >PRK12705 hypothetical protein; Provisional Probab=96.53 E-value=0.067 Score=31.63 Aligned_cols=61 Identities=5% Similarity=-0.029 Sum_probs=27.2 Q ss_pred CCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 988598876--8899999999999999999995540899999999999999999999999999 Q gi|254781086|r 13 FPPFDTSTF--LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVE 73 (176) Q Consensus 13 mpqld~~~f--~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae 73 (176) ||++++..+ +.-+|-++|.|++.|++-+.+....+...=+..+..+.+.-.+++..+.++. T Consensus 1 ~~~~~~~~~~~i~~l~~~~ig~~lg~~~~~~~~~~~~~~a~~~a~~i~~~a~ke~~~~r~e~q 63 (485) T PRK12705 1 MKMQYLVLTILVLFLILVLIGLVLGVFIRYLYARQLKKAAEQKAERILANAYKKAKDLKEQNQ 63 (485) T ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 960146999999999999999999999999999999888999999999999999999999999 No 62 >PRK06328 type III secretion system protein; Validated Probab=96.53 E-value=0.068 Score=31.62 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=56.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL 153 (176) Q Consensus 74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl 153 (176) ......+..+..|+.++..++.++..+.+...++...+--++--..-..-...+..+.......+++...+++..+++|+ T Consensus 26 ~~~~~A~eilE~Ak~~Ae~~~~ea~~e~e~~~eea~~~G~~eG~~~~~~~la~~~~e~~~~~~~~e~~lv~lvl~aarKI 105 (223) T PRK06328 26 SALLDAKELLEKTKEDSEAYTQETHEECAELREEAKNQGFKEGSEAWSKQLAFLEKETQALRIQVKEALVPLAIASVKKI 105 (223) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99874999999999999999999999999999999998899999999999999999999999999999999999999999 Q ss_pred -HHH--CCHHHHHHHHHHHHHHHH Q ss_conf -841--599999999999994210 Q gi|254781086|r 154 -GFS--VSDADVQKILDRKRDGID 174 (176) Q Consensus 154 -~~~--~~~~~~~~~i~~~~~~i~ 174 (176) +.. .+...+-.+|...++.+. T Consensus 106 Ig~el~~~pe~vl~iVr~aL~~vr 129 (223) T PRK06328 106 IGKELELHPETIVSIISEALKELT 129 (223) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 888876088999999999999986 No 63 >KOG3976 consensus Probab=96.52 E-value=0.069 Score=31.55 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=57.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999955408999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 28 LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN 104 (176) Q Consensus 28 ~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~ 104 (176) ..++|++|+++..+.+.|.|.+..|++.++|.+.+++++...-++-...-+.++..........-+.+-.++...-. T Consensus 100 ~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~ 176 (247) T KOG3976 100 STLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQ 176 (247) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 03369999999999855999988677799999999998886799999876456665778888776456566679888 No 64 >PRK03963 V-type ATP synthase subunit E; Provisional Probab=96.45 E-value=0.076 Score=31.30 Aligned_cols=51 Identities=20% Similarity=0.062 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999 Q gi|254781086|r 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ 131 (176) Q Consensus 81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k 131 (176) +.+.+|+.++..|+.+|+.+++.+..++..+++...+.....++.+....+ T Consensus 10 ~I~~eA~~~a~~Il~eA~~eae~I~~~a~~~a~~~~~~~~~k~~~ea~~~~ 60 (198) T PRK03963 10 EINREAEQKIEYILSEARKEAEKIKEEARRRAEARAEWILRRAKTQAELEK 60 (198) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999999999999999 No 65 >TIGR02926 AhaH ATP synthase archaeal, H subunit; InterPro: IPR014275 A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents subunit H of the archaeal A-ATPase; it is unclear precisely where subunit H fits into the complex. More information about this protein can be found at Protein of the Month: ATP Synthases .. Probab=96.39 E-value=0.083 Score=31.07 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=52.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 72 VESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTK 147 (176) Q Consensus 72 ae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~ 147 (176) ..++-......+.+|+.++..++.+|+.++..+++.+..+|.+..+.++..++.++..++...+.+=.+.+.++.. T Consensus 4 IK~AE~~A~~~i~eA~~~~~~~i~eAr~eA~~l~e~Ae~eA~~~~~e~i~~a~~~i~~E~~~I~~~~eke~e~~~~ 79 (85) T TIGR02926 4 IKKAEEEAEELIEEAKEEREQRIAEAREEAKELLEEAEEEAKKLKEEIIEEAEEEIEKEAEKILEEGEKEIEELKS 79 (85) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8998999999989899999866899989988888998898899998888999999998799988665563999999 No 66 >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Probab=96.36 E-value=0.086 Score=30.98 Aligned_cols=121 Identities=14% Similarity=0.167 Sum_probs=64.6 Q ss_pred CCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6899885988768899--999999999999999995540-8----99999999999999999999999999999999999 Q gi|254781086|r 10 SSRFPPFDTSTFLSQF--FWLAIIFGIFYWVTHRFILPR-L----SSIMEVRRNLISSDQEKMDSAKREVESMISSYEES 82 (176) Q Consensus 10 ~~gmpqld~~~f~~q~--fw~~I~F~il~~il~~~~~~p-i----~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~ 82 (176) -+.| .||+.+.-|.+ .|.+..=---+-+-.++.+|+ | ...+......+..-+...+..+.+.++...+.+.. T Consensus 462 nas~-~FD~~tl~PtYrl~~G~pG~S~A~~IA~rlGlp~~ii~~A~~~l~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~ 540 (780) T PRK00409 462 NASV-EFDEETLRPTYRLLIGIPGRSNAFEIAKRLGLPPNIIEEAKKVYGEDKEKLNELIASLEELERELEEKAEEAEKL 540 (780) T ss_pred EEEE-EECCCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9888-874023786068705999763699999992979999999998856316589999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999 Q gi|254781086|r 83 LAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQK 132 (176) Q Consensus 83 l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~ 132 (176) ..+++....+. ++..++.++...+...++..+++..+.++++++...-+ T Consensus 541 ~~e~~~~~~~l-~~~~~~l~~~~~~~~~~~~~ea~~~i~~a~~e~~~~i~ 589 (780) T PRK00409 541 LKEAEKLKEEL-EEQKEKLQEREDKLLLEAEEEAQQAIKEAKKEAAEIIK 589 (780) T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999-99999999999999999999999999999999999999 No 67 >COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] Probab=96.27 E-value=0.096 Score=30.69 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVT 146 (176) Q Consensus 74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a 146 (176) +........+.+|+.++.+++.+|+.++..++.+...++....+..+..+++++...+...+.+-...+.++. T Consensus 14 ~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~ 86 (108) T COG2811 14 KAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAIL 86 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9886589999999988998999999889999999999999999999998898889999999988897799998 No 68 >pfam03179 V-ATPase_G Vacuolar (H+)-ATPase G subunit. This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialized cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation. Probab=96.20 E-value=0.1 Score=30.45 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=34.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKAS 135 (176) Q Consensus 82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~ 135 (176) .|..|..+|..|+++|+..-...+.+++.+|..+++....+-+.+......... T Consensus 8 qLL~AEk~A~~iV~~AR~~k~~rLKqAK~EA~~EI~~yR~~kE~ef~~~e~~~~ 61 (105) T pfam03179 8 QLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHS 61 (105) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999878889999999999999999999999999863 No 69 >COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] Probab=95.98 E-value=0.13 Score=29.80 Aligned_cols=80 Identities=26% Similarity=0.236 Sum_probs=50.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999----9999999999999999999999999-999999999 Q gi|254781086|r 68 AKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQ----REVFEKDLLHKLSNAQNEIDDMQKK-ASQEVYSIV 142 (176) Q Consensus 68 ~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~----~~~a~~ei~~~~~~a~~~I~~~k~~-a~~ei~~~a 142 (176) +.+..+.+..+.+..+.+|+.++..++.++..++.+..++. +.++..+...++.++++++...... ....+.+.+ T Consensus 19 ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ka~~~k~~~~a 98 (108) T COG2811 19 ADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAAEGKVVEAA 98 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999988998999999889999999999999999999998898889999999988897799998886765789999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781086|r 143 GEVTK 147 (176) Q Consensus 143 ~~~a~ 147 (176) .+... T Consensus 99 ~~~~~ 103 (108) T COG2811 99 LSEFL 103 (108) T ss_pred HHHHH T ss_conf 99999 No 70 >pfam01991 vATP-synt_E ATP synthase (E/31 kDa) subunit. This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Probab=95.72 E-value=0.17 Score=29.12 Aligned_cols=40 Identities=28% Similarity=0.079 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999 Q gi|254781086|r 78 SYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLL 117 (176) Q Consensus 78 ~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~ 117 (176) +.++.+.+|+.++..++.++..++...+.....++.++++ T Consensus 9 ka~eI~~~A~~e~~~~k~~~~~~~~~~~~~~~~k~~k~~~ 48 (195) T pfam01991 9 KAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE 48 (195) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999 No 71 >TIGR02926 AhaH ATP synthase archaeal, H subunit; InterPro: IPR014275 A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents subunit H of the archaeal A-ATPase; it is unclear precisely where subunit H fits into the complex. More information about this protein can be found at Protein of the Month: ATP Synthases .. Probab=95.70 E-value=0.17 Score=29.10 Aligned_cols=69 Identities=28% Similarity=0.344 Sum_probs=49.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999----999999999999999999999999999 Q gi|254781086|r 68 AKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQR----EVFEKDLLHKLSNAQNEIDDMQKKASQ 136 (176) Q Consensus 68 ~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~----~~a~~ei~~~~~~a~~~I~~~k~~a~~ 136 (176) +......+....+..+.+||.++..|+.++..++.+..++.. .++..+...++...+++|..+...+.. T Consensus 11 A~~~i~eA~~~~~~~i~eAr~eA~~l~e~Ae~eA~~~~~e~i~~a~~~i~~E~~~I~~~~eke~e~~~~~A~~ 83 (85) T TIGR02926 11 AEELIEEAKEEREQRIAEAREEAKELLEEAEEEAKKLKEEIIEEAEEEIEKEAEKILEEGEKEIEELKSKAKE 83 (85) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999898999998668999899888889988988999988889999999987999886655639999996043 No 72 >TIGR01147 V_ATP_synt_G V-type ATPase, G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.. Probab=95.30 E-value=0.24 Score=28.23 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=56.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCC Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999--84159 Q gi|254781086|r 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL--GFSVS 158 (176) Q Consensus 81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl--~~~~~ 158 (176) ..|..|..+|.+++++||..-..-+..++.+|..||+.-..+-+++...--.....-.......+-...-.+| ..... T Consensus 10 q~LL~AEKrAaekVseARkrk~~RlKqAK~EA~~EvE~Yk~QrE~EFK~FEa~~~G~~~~~~~k~~a~t~~~i~e~k~~~ 89 (114) T TIGR01147 10 QQLLQAEKRAAEKVSEARKRKQKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGKGELEEKIEAETEAKIAEIKKIV 89 (114) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999998988999998878878889999998999888788998899998638847899998585899999999998 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999994 Q gi|254781086|r 159 DADVQKILDRKRD 171 (176) Q Consensus 159 ~~~~~~~i~~~~~ 171 (176) ....+.+|+..|. T Consensus 90 ~~~k~~Vik~LL~ 102 (114) T TIGR01147 90 QKNKDAVIKDLLE 102 (114) T ss_pred HHHHHHHHHHHHH T ss_conf 6007899999986 No 73 >PRK08404 V-type ATP synthase subunit H; Validated Probab=95.10 E-value=0.28 Score=27.85 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999----9999999999999999999999999999999999999999999999999 Q gi|254781086|r 75 MISSYEESLAIARAHAK----EIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYS 140 (176) Q Consensus 75 ~~~~~e~~l~eak~ea~----~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~ 140 (176) +..+....+.+|+.++. .++..|..+++..++.++.+-+.++.+++...+.+|...+..+..+... T Consensus 25 Ak~eAK~Ii~kAkeEAk~iEeeii~kAeeea~~lIE~kk~EGE~EAkKi~eeGe~EieelK~ra~~nfE~ 94 (106) T PRK08404 25 AKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKLEGEEEAKKILEEGEAEISELKARAEEKFET 94 (106) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8888999999989999987999999999999999999887027889999998186899999888876999 No 74 >PRK06937 type III secretion system protein; Reviewed Probab=95.05 E-value=0.28 Score=27.77 Aligned_cols=100 Identities=18% Similarity=0.087 Sum_probs=57.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999984 Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF 155 (176) Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~ 155 (176) .-+....+..|+.++..|+.+++...+...+.-..+-..+......+...............++.....++...++||.+ T Consensus 29 ~~~A~~ile~A~~~A~~i~~~A~~~~e~~~~~Gy~eG~~ea~~e~ae~i~~~~~~~~~~~~~le~~l~~lv~~av~kIlg 108 (204) T PRK06937 29 LLSAEELVEAARQRAAEIEAEAREVYEQQKQLGYEAGLDEARTEQAELILETVLQCQEFYRGIEQQMSEVVLEAVRKILN 108 (204) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 84399999999999999999999999999999999999999999999999999999999999999999999999999865 Q ss_pred HCCHH-HHHHHHHHHHHHHHC Q ss_conf 15999-999999999942106 Q gi|254781086|r 156 SVSDA-DVQKILDRKRDGIDA 175 (176) Q Consensus 156 ~~~~~-~~~~~i~~~~~~i~~ 175 (176) ..++. ..-.+|...+..+.. T Consensus 109 ~~d~~el~~~~v~~al~~v~~ 129 (204) T PRK06937 109 DYDDVERTLQVVREALALVSN 129 (204) T ss_pred CCCHHHHHHHHHHHHHHHHHC T ss_conf 468389999999999999735 No 75 >COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] Probab=94.97 E-value=0.3 Score=27.63 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH- Q ss_conf 99999999999999999999999999999999999999999999999999999-9999999999999999999999999- Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID-DMQKKASQEVYSIVGEVTKDLVRKL- 153 (176) Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~-~~k~~a~~ei~~~a~~~a~~i~~kl- 153 (176) ..+.+....+|+.++..+.++++..++...+......+.+++...+....... ..+...+....+....+-..+.++| T Consensus 16 ~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~~~~~~~e~L~ 95 (194) T COG1390 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILESVFEAVEEKLR 95 (194) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999989999999999999999999999999899999999999998999999999999999999999999997 Q ss_pred --HHHCCHHHHHHHHHHHHHH Q ss_conf --8415999999999999942 Q gi|254781086|r 154 --GFSVSDADVQKILDRKRDG 172 (176) Q Consensus 154 --~~~~~~~~~~~~i~~~~~~ 172 (176) ..+..-...++++...+.. T Consensus 96 ~i~~~~~~~~l~~ll~~~~~~ 116 (194) T COG1390 96 NIASDPEYESLQELLIEALEK 116 (194) T ss_pred CCCCCCCHHHHHHHHHHHHHH T ss_conf 276773167899999999986 No 76 >KOG1772 consensus Probab=94.66 E-value=0.36 Score=27.13 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999 Q gi|254781086|r 82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD 129 (176) Q Consensus 82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~ 129 (176) .|..|..+|.+++++|+..-..-...++.+|..+++.-..+-+++... T Consensus 10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ 57 (108) T KOG1772 10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKE 57 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999989888887889999999999987899999 No 77 >pfam00895 ATP-synt_8 ATP synthase protein 8. Probab=94.23 E-value=0.049 Score=32.50 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=13.4 Q ss_pred CCCCCHHHHHHHHHHHHHHH Q ss_conf 98859887688999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIF 32 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F 32 (176) ||||||+.|+.-++-..+.| T Consensus 1 MPQLnp~pWf~i~~~~wl~l 20 (55) T pfam00895 1 MPQLNPSPWFLIFLSSWLTL 20 (55) T ss_pred CCCCCCCCHHHHHHHHHHHH T ss_conf 99888822899999999999 No 78 >PRK08404 V-type ATP synthase subunit H; Validated Probab=94.17 E-value=0.46 Score=26.46 Aligned_cols=67 Identities=22% Similarity=0.111 Sum_probs=44.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 75 MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI 141 (176) Q Consensus 75 ~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~ 141 (176) +....+.++..|+.++..|+..|+.++..+-++...+++.+....+.+...+=+.+-++.+.+=... T Consensus 14 AEk~AeeRIE~Ak~eAK~Ii~kAkeEAk~iEeeii~kAeeea~~lIE~kk~EGE~EAkKi~eeGe~E 80 (106) T PRK08404 14 AERLAEERIERAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKLEGEEEAKKILEEGEAE 80 (106) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 8887999999888889999999899999879999999999999999998870278899999981868 No 79 >PRK01194 V-type ATP synthase subunit E; Provisional Probab=94.11 E-value=0.48 Score=26.39 Aligned_cols=98 Identities=8% Similarity=0.032 Sum_probs=62.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999-999999999999998 Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY-SIVGEVTKDLVRKLG 154 (176) Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~-~~a~~~a~~i~~kl~ 154 (176) ..+....+.+|+.++.++++++...+..+......+++.+++++.++.......+.+......+ +...++-..+.+.+. T Consensus 15 e~k~k~I~~ea~~ea~~i~~ea~~k~~~i~~~~~~rae~e~~~i~~~ii~sA~le~kk~~l~a~~e~ld~~~~~~~e~i~ 94 (185) T PRK01194 15 EEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEHLM 94 (185) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999999999999999899999999999999888999999999998750788999999999999999999999986 Q ss_pred H---HCC-HHHHHHHHHHHHHHH Q ss_conf 4---159-999999999999421 Q gi|254781086|r 155 F---SVS-DADVQKILDRKRDGI 173 (176) Q Consensus 155 ~---~~~-~~~~~~~i~~~~~~i 173 (176) . ... ++...++|+.+.+.+ T Consensus 95 ~~~~~k~Y~~lL~kLi~~A~k~l 117 (185) T PRK01194 95 NITKSKEYDSILNKMIEVAIKTL 117 (185) T ss_pred CCCCCCCHHHHHHHHHHHHHHHH T ss_conf 68777558999999999999860 No 80 >PRK00083 frr ribosome recycling factor; Reviewed Probab=93.82 E-value=0.32 Score=27.47 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..+++++........++.+.+...+.. ..+-++-....++.+++.......+++... T Consensus 99 ri~iP~lT~--E~R~elvK~~k~~~E~aKv~iRniR~~~~~~iKk~~k~-~~iseD~~k~~~~~iqkltd~~~~~id~~~ 175 (185) T PRK00083 99 RLPIPPLTE--ERRKELVKVAKKEAEEAKVAIRNIRRDANDKLKKLEKD-KEISEDEERRAEDEIQKLTDKYIKKIDELL 175 (185) T ss_pred EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 875898889--99999999999999999999999999999999876504-788778898899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 176 ~~Keke 181 (185) T PRK00083 176 AEKEKE 181 (185) T ss_pred HHHHHH T ss_conf 999998 No 81 >cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Probab=93.20 E-value=0.49 Score=26.31 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=43.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++..+........++.+.+..... ...+-++-...+++.++........+++... T Consensus 95 ri~iP~lT~--E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~ikk~~k-~~~iseD~~k~~~~~iqkltd~~~~~id~~~ 171 (179) T cd00520 95 RVNLPPLTE--ERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEK-EKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179) T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 736998999--9999999999999999999999999999999987663-3899876888999999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 172 ~~Keke 177 (179) T cd00520 172 KSKEKE 177 (179) T ss_pred HHHHHH T ss_conf 999885 No 82 >COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] Probab=92.98 E-value=0.74 Score=25.22 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 (176) Q Consensus 82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~e 137 (176) ...+++.++..|.++|..++..+.++....++.-++.....++++....+...++. T Consensus 11 I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~ 66 (194) T COG1390 11 ILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISS 66 (194) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999899999999999999999999999998999999999999 No 83 >MTH00102 ATP8 ATP synthase F0 subunit 8; Validated Probab=92.76 E-value=0.1 Score=30.52 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=16.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 98859887688999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIF 35 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il 35 (176) |||||.++|+.-+.-.++.+.++ T Consensus 1 MPQLDTStWf~tI~smi~tLFi~ 23 (67) T MTH00102 1 MPQLDTSTWFITILSMLLTLFII 23 (67) T ss_pred CCCCCCCHHHHHHHHHHHHHHHH T ss_conf 98653303899999999999999 No 84 >KOG0718 consensus Probab=92.55 E-value=0.84 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=28.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 598876889999999999999999999554089999999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR 54 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R 54 (176) |+-.+-++-+||-+|.=++.||.+.+|++.|...-.++| T Consensus 368 l~d~~~p~avfya~v~P~~s~F~l~k~v~rP~~~~~k~~ 406 (546) T KOG0718 368 LCDELLPSAVFYALVFPITSYFGLKKFVLRPYLLKRKKR 406 (546) T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHH T ss_conf 610121365563116778899988887106998865768 No 85 >PRK09098 type III secretion system protein HrpB; Validated Probab=92.08 E-value=0.96 Score=24.50 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=52.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH---HHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999--------9999999---999999999999999 Q gi|254781086|r 72 VESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLH--------KLSNAQN---EIDDMQKKASQEVYS 140 (176) Q Consensus 72 ae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~--------~~~~a~~---~I~~~k~~a~~ei~~ 140 (176) ......+....|..|+.++..|+++|+.+++.+..+.+.+++.-.+. -+.++.. +....+.++...+++ T Consensus 34 ~~~~~~~~~~~L~~Ar~eA~~Il~~Ar~~A~~I~~~Ar~e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~~~~~m~~ 113 (229) T PRK09098 34 LAAVHAERDAVLAAARDRAERIAAEARAQAEALLEDARREADRSARLGYAAGLRQALAEWHARGADHAFAERRAARRMRE 113 (229) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999989999999999999999999999999999999999999998899999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHCCHH-HHHHHHHH Q ss_conf 99999999999998415999-99999999 Q gi|254781086|r 141 IVGEVTKDLVRKLGFSVSDA-DVQKILDR 168 (176) Q Consensus 141 ~a~~~a~~i~~kl~~~~~~~-~~~~~i~~ 168 (176) ...++....++|+....+.. .+..++.. T Consensus 114 rLa~iV~~AVekIv~~e~~~aL~~ra~~~ 142 (229) T PRK09098 114 RLAEIVAAAVEQIVHGEDPAALFARAAQT 142 (229) T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 99999999999999713988899999999 No 86 >PRK06669 fliH flagellar assembly protein H; Validated Probab=91.98 E-value=0.99 Score=24.42 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999-999999999999999999999999999---9999999999999 Q gi|254781086|r 69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN-LEFQREVFEKDLLHKLSNAQNEIDDMQ---KKASQEVYSIVGE 144 (176) Q Consensus 69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~-~e~~~~~a~~ei~~~~~~a~~~I~~~k---~~a~~ei~~~a~~ 144 (176) .++......+.+..+.++..+...++++++.++... ++.-..++..+....+.++..-+.... ............+ T Consensus 83 ~dels~~~~klq~~ie~~e~e~~~~le~a~~eG~eeG~e~G~~ea~~e~~~~i~~~~~ile~~~~~~~~~l~~~E~elv~ 162 (268) T PRK06669 83 EDELSSSRIKLEMQIEEAEEERKRLLEEAKAEGYEEGYEEGFEKAREEFQKLIDELKAILEEAIDEREEILESSEEEIVE 162 (268) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 47753508999999999999999999999999999999999999999999999999999999999999999998999999 Q ss_pred HHHHHHHHHH-H--HCCHHHHHHHHHHHHHHHHC Q ss_conf 9999999998-4--15999999999999942106 Q gi|254781086|r 145 VTKDLVRKLG-F--SVSDADVQKILDRKRDGIDA 175 (176) Q Consensus 145 ~a~~i~~kl~-~--~~~~~~~~~~i~~~~~~i~~ 175 (176) ++..+++++. . +.+...+-.+|...++.+.. T Consensus 163 lal~IAkkVI~~~~~~~~~i~~~lvk~~l~evk~ 196 (268) T PRK06669 163 LALDIAKKVIKEISENSKEVALALVKELLKEVKD 196 (268) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC T ss_conf 9999999999999705899999999999997313 No 87 >TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family; InterPro: IPR012842 This entry is related to IPR009335 from INTERPRO, but is broader. IPR009335 from INTERPRO describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This entry also includes the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This entry excludes the related protein FliH of the bacterial flagellar apparatus (see IPR000563 from INTERPRO).. Probab=91.17 E-value=1.2 Score=23.90 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=63.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999--99999999999999999999999999999999999999999999998 Q gi|254781086|r 77 SSYEESLAIARAHAKEIIDKVVAAAEQNLEF--QREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLG 154 (176) Q Consensus 77 ~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~--~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~ 154 (176) ...+..|.+|+..+..|+.++..+++..... ...+...+....-..--..-..........|.+.+..+....+++|. T Consensus 17 ~~A~~il~~A~~~A~~~~~~A~e~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~l 96 (183) T TIGR02499 17 ARAQAILAAARQRAEAILADAEEEAEASRQLLKGYEQGLEQFWQEAAAQLVEWQQEAEQLEASLEERLAELVLQALEQIL 96 (183) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 84999999999999999999999999999999999999999999999999999999999999999999999999999986 Q ss_pred HHC----CHH-HHHHHHHHHHHHH Q ss_conf 415----999-9999999999421 Q gi|254781086|r 155 FSV----SDA-DVQKILDRKRDGI 173 (176) Q Consensus 155 ~~~----~~~-~~~~~i~~~~~~i 173 (176) ++. ++. ....+|...+..+ T Consensus 97 ~~~~~qQ~~~~~~~~~lr~~~~~~ 120 (183) T TIGR02499 97 GETLGQQDESERLVRLLRQLLAAV 120 (183) T ss_pred HHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 563358998899999999999987 No 88 >COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis] Probab=91.10 E-value=1.2 Score=23.85 Aligned_cols=84 Identities=24% Similarity=0.350 Sum_probs=43.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) ++.+||+.. +.|++.+..--..++..+-.......+....+...... ..+-++....++..++......-.+++... T Consensus 101 Rv~~P~lTe--ErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~-~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187) T COG0233 101 RVPLPPLTE--ERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKD-KEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187) T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 754999887--99999999999988999999999999999999987525-876567888899999999999999999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254781086|r 121 SNAQNEI 127 (176) Q Consensus 121 ~~a~~~I 127 (176) ...+++| T Consensus 178 ~~KEkEi 184 (187) T COG0233 178 KDKEKEI 184 (187) T ss_pred HHHHHHH T ss_conf 9999887 No 89 >pfam06936 Selenoprotein_S Selenoprotein S (SelS). This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. The function of this family is unknown. Probab=91.05 E-value=1.2 Score=23.82 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7688999999999999999999955408 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) .|++..-|.+++++|++++|+--+.|.+ T Consensus 31 ~~l~~YGWyiL~~~v~ly~l~qkL~~~~ 58 (190) T pfam06936 31 ELLSKYGWYLLLGCVGIYLLIQKLRPRW 58 (190) T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999637799999999999999871999 No 90 >COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion] Probab=90.94 E-value=0.47 Score=26.39 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 688999999999999999999955408999999999999 Q gi|254781086|r 21 FLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLIS 59 (176) Q Consensus 21 f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~ 59 (176) +++.++-+++.|++|||+++| |=.+-+.+|++.+. T Consensus 8 ~~~~ll~~vl~~~ifyFli~R----PQrKr~K~~~~ml~ 42 (97) T COG1862 8 GLVLLLPLVLIFAIFYFLIIR----PQRKRMKEHQELLN 42 (97) T ss_pred CHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHH T ss_conf 077999999999999986167----88999999999997 No 91 >MTH00036 ATP8 ATP synthase F0 subunit 8; Validated Probab=89.94 E-value=0.39 Score=26.95 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.2 Q ss_pred CCCCCHHHHHHHH Q ss_conf 9885988768899 Q gi|254781086|r 13 FPPFDTSTFLSQF 25 (176) Q Consensus 13 mpqld~~~f~~q~ 25 (176) |||||+..|+-.+ T Consensus 1 MPQLdf~~W~~NF 13 (53) T MTH00036 1 MPQLDFTWWLFNF 13 (53) T ss_pred CCCCHHHHHHHHH T ss_conf 9853207999999 No 92 >TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane. Probab=89.88 E-value=0.47 Score=26.42 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7688999999999999999999955408999999999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRN 56 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~ 56 (176) ||.|+++|++|.=+++|+++|-++-|+|.+=.++.-+ T Consensus 282 ~YSp~LT~vV~~SL~~Y~~~s~~v~p~LRkRVe~kfe 318 (703) T TIGR01846 282 FYSPTLTGVVIGSLVCYALLSVFVSPILRKRVEDKFE 318 (703) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 6401688789999999999999850011023577641 No 93 >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO).. Probab=89.60 E-value=1.6 Score=23.06 Aligned_cols=95 Identities=9% Similarity=0.094 Sum_probs=60.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH--HHHHHHHHHH Q ss_conf 999999999999999999554089999999999999999--------------999999999999999--9999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQE--------------KMDSAKREVESMISS--YEESLAIARA 88 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~--------------~A~~~~~eae~~~~~--~e~~l~eak~ 88 (176) +.-.++.|++++||+|||+|..|..=|++..+-|.+=.. +-...-+-.+-.+.. ...+|..-.. T Consensus 374 ~~~g~L~L~~~~~i~WrvVYrsv~~rL~q~t~Al~rla~Gdldi~lPd~~GddEL~~m~~ai~~fR~~a~~~~~L~~~~~ 453 (1052) T TIGR02956 374 LILGLLGLVILVFIMWRVVYRSVILRLNQHTQALLRLAEGDLDISLPDAKGDDELAHMGRAIEVFRDTAAKKLKLEAEER 453 (1052) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999877766055567899999973668764578888844899999999999999999866769999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999 Q gi|254781086|r 89 HAKEIIDKVVAAAEQNLEFQREVFEKDLLHK 119 (176) Q Consensus 89 ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~ 119 (176) ...+-+.+.|+..+..+.....+++.-=++. T Consensus 454 ~~~~EL~~HKe~LE~~v~~RT~EL~~~N~rL 484 (1052) T TIGR02956 454 QVKQELQEHKESLEQLVAQRTQELKETNERL 484 (1052) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998889999999999889999974676 No 94 >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF. Probab=89.17 E-value=1.8 Score=22.87 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999995540899999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDS 67 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~ 67 (176) ++.+++.|++.|++.+++.-..+...-..-+.-+.+.-.+|+. T Consensus 5 ii~lviG~~iGy~l~k~~~~~~i~~A~~~A~~Ii~~A~~eAe~ 47 (514) T TIGR03319 5 LVALIVGLIIGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAET 47 (514) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999 No 95 >TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849 This entry describes proteins of unknown function.. Probab=88.73 E-value=0.53 Score=26.10 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=16.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6889999999999999999999 Q gi|254781086|r 21 FLSQFFWLAIIFGIFYWVTHRF 42 (176) Q Consensus 21 f~~q~fw~~I~F~il~~il~~~ 42 (176) +..+++-+++.|++|||+++|. T Consensus 2 ~l~~l~~lv~~~~~FYFl~~RP 23 (86) T TIGR00739 2 FLTTLLPLVLIFLIFYFLIIRP 23 (86) T ss_pred CCHHHHHHHHHHHHHHHHHCCH T ss_conf 5215899999999999970497 No 96 >pfam06188 HrpE HrpE protein. This family consists of several bacterial HrpE proteins. The exact function of this family is unknown but it is thought that HrpE is involved in the secretion of HrpZ (harpinPss). Probab=88.41 E-value=2 Score=22.55 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999984 Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGF 155 (176) Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~ 155 (176) .......+.+|+..+..|+..+.++++...+...++++.+.=+.-...-.....+|......+-..+..+....+.++.+ T Consensus 29 ~~~A~~il~~Ar~QA~~il~~a~~~ae~~~~~~~eqA~a~FWqqA~a~L~~w~~qRe~~~~~l~~~~~~ll~qAL~~LLd 108 (191) T pfam06188 29 SLLARTLLEDARQQAEQILDLAEEKAEALQQRAEEQAEAAFWQQANALLQEWQQQREQLEQQALSAADQLLNQALQQLLD 108 (191) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99899999999999999999999999999998999999999999999999999999999999999999999999999864 Q ss_pred HCCHH-HHHHHHHHHH Q ss_conf 15999-9999999999 Q gi|254781086|r 156 SVSDA-DVQKILDRKR 170 (176) Q Consensus 156 ~~~~~-~~~~~i~~~~ 170 (176) +.++. ....++-..+ T Consensus 109 e~~~~qR~~ALlRqLl 124 (191) T pfam06188 109 ETPLPQRLQALLRQLL 124 (191) T ss_pred CCCHHHHHHHHHHHHH T ss_conf 6984899999999999 No 97 >MTH00133 ATP8 ATP synthase F0 subunit 8; Provisional Probab=88.08 E-value=0.53 Score=26.08 Aligned_cols=10 Identities=10% Similarity=0.670 Sum_probs=8.4 Q ss_pred CCCCCHHHHH Q ss_conf 9885988768 Q gi|254781086|r 13 FPPFDTSTFL 22 (176) Q Consensus 13 mpqld~~~f~ 22 (176) ||||||+=|+ T Consensus 1 MPQLnP~PWf 10 (55) T MTH00133 1 MPQLNPAPWF 10 (55) T ss_pred CCCCCCCHHH T ss_conf 9988864099 No 98 >pfam06103 DUF948 Bacterial protein of unknown function (DUF948). This family consists of bacterial sequences several of which are thought to be general stress proteins. Probab=87.68 E-value=2.2 Score=22.27 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999955408999999999999999999999999999999999999999999999 Q gi|254781086|r 27 WLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKE 92 (176) Q Consensus 27 w~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ 92 (176) -.+|.|++|++++.+++. .+.+.|++=...|..--...+....+++.++.+.+.-+.+.+.+... T Consensus 5 i~AiAf~vLvi~l~~~L~-~~~~tl~~~~~Ti~~l~~~vd~i~~et~~lL~ktN~L~~DVn~K~~~ 69 (90) T pfam06103 5 IIAIAFLVLVIFLIKTLK-SLSKTLDEVNKTLAGLTKQVDGITTETEDLLAKTNVLLEDVNGKVET 69 (90) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999-99999999999999999878989999999999888899999989997 No 99 >MTH00171 ATP8 ATP synthase F0 subunit 8; Provisional Probab=87.54 E-value=0.55 Score=26.01 Aligned_cols=11 Identities=9% Similarity=0.437 Sum_probs=9.1 Q ss_pred CCCCCHHHHHH Q ss_conf 98859887688 Q gi|254781086|r 13 FPPFDTSTFLS 23 (176) Q Consensus 13 mpqld~~~f~~ 23 (176) ||||||+=|+. T Consensus 1 MPQLNPaPWf~ 11 (54) T MTH00171 1 MPQLNPIPWFF 11 (54) T ss_pred CCCCCCHHHHH T ss_conf 99888503999 No 100 >PRK05585 yajC preprotein translocase subunit YajC; Validated Probab=87.31 E-value=1.4 Score=23.54 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999554089999999999 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNL 57 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~ 57 (176) ++++++++.|++|||++.+ |=.+-..++++. T Consensus 20 ~~ll~~ili~~vfYfl~iR----PQ~Kr~ke~~~m 50 (107) T PRK05585 20 TSLLPLVVFFAIFYFLIIR----PQQKRQKEHKKM 50 (107) T ss_pred HHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHH T ss_conf 9999999999999987426----488999999999 No 101 >MTH00123 ATP8 ATP synthase F0 subunit 8; Provisional Probab=86.75 E-value=0.57 Score=25.90 Aligned_cols=13 Identities=8% Similarity=0.460 Sum_probs=10.3 Q ss_pred CCCCCHHHHHHHH Q ss_conf 9885988768899 Q gi|254781086|r 13 FPPFDTSTFLSQF 25 (176) Q Consensus 13 mpqld~~~f~~q~ 25 (176) ||||||..|+.-+ T Consensus 1 MPQLNp~pWf~i~ 13 (55) T MTH00123 1 MPQLNPNPWFLIL 13 (55) T ss_pred CCCCCCCCHHHHH T ss_conf 9988883589999 No 102 >MTH00122 consensus Probab=86.70 E-value=0.54 Score=26.03 Aligned_cols=10 Identities=10% Similarity=0.663 Sum_probs=8.2 Q ss_pred CCCCCHHHHH Q ss_conf 9885988768 Q gi|254781086|r 13 FPPFDTSTFL 22 (176) Q Consensus 13 mpqld~~~f~ 22 (176) ||||||+=|+ T Consensus 1 MPQLNP~PWF 10 (55) T MTH00122 1 MPQLNPNPWF 10 (55) T ss_pred CCCCCCCCHH T ss_conf 9888884589 No 103 >MTH00072 ATP8 ATP synthase F0 subunit 8; Provisional Probab=86.57 E-value=0.79 Score=25.02 Aligned_cols=10 Identities=10% Similarity=0.647 Sum_probs=8.4 Q ss_pred CCCCCHHHHH Q ss_conf 9885988768 Q gi|254781086|r 13 FPPFDTSTFL 22 (176) Q Consensus 13 mpqld~~~f~ 22 (176) ||||||+=|+ T Consensus 1 MPQLNP~PWF 10 (55) T MTH00072 1 MPQLNPGPWF 10 (55) T ss_pred CCCCCCHHHH T ss_conf 9888861899 No 104 >pfam01765 RRF Ribosome recycling factor. The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Probab=85.91 E-value=2.8 Score=21.67 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=38.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..+++++........++.+.+...+.. ..+-++-....++.+++........++... T Consensus 81 rv~iP~lT~--E~R~~lvK~~k~~~E~aKv~iR~iR~~~~~~iKk~~~~-~~iseD~~k~~~~~iq~ltd~~~~~id~~~ 157 (165) T pfam01765 81 RIPIPPLTE--ERRKELVKQAKKLAEEAKVAIRNIRRDANDKLKKLEKD-KEISEDEVKKAEKEIQKLTDKYIKKIDELL 157 (165) T ss_pred EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 985898889--99999999999999999999999999999999876504-999877888999999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 158 ~~Keke 163 (165) T pfam01765 158 KKKEKE 163 (165) T ss_pred HHHHHH T ss_conf 999986 No 105 >pfam05103 DivIVA DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils. Probab=83.85 E-value=3.4 Score=21.10 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD 129 (176) Q Consensus 56 ~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~ 129 (176) ......+...+..-.+...........|..|..-+..++..|+.+++.++. +|+.+++.++.+|..+... T Consensus 42 ~~L~~~~~~l~~~l~~~~~~e~~l~~~L~~Aq~~a~~~~~~A~~eA~~ii~----eA~~~A~~iv~eA~~~~~~ 111 (131) T pfam05103 42 EELKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKEAELIIK----EAEAKAERIVNDANEEAKK 111 (131) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999988889999999999999999999999999999999----9999999999999999999 No 106 >TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family Probab=83.62 E-value=3.5 Score=21.04 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999995540899999999999999999999999999999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAK 91 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~ 91 (176) +||+++. ++.++..-|++.|+.+- |.. +... ...+.-.+-|..+|.|.+.+.. T Consensus 1 ~FWi~~~--~l~~~a~~~i~~Pl~r~---~~~--~~~~-------~r~~~n~~iyrdqL~ELe~d~~ 53 (117) T TIGR03142 1 LFWIVAA--LLTLVALLFLLLPLLRR---KRA--AATV-------DRDELNLAVYRDRLAELERDLA 53 (117) T ss_pred CHHHHHH--HHHHHHHHHHHHHHHCC---CCC--CCCC-------CHHHHHHHHHHHHHHHHHHHHH T ss_conf 9589999--99999999999999557---445--6751-------5588889999999999999998 No 107 >pfam04100 Vps53_N Vps53-like, N-terminal. Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events. Probab=83.22 E-value=3.6 Score=20.94 Aligned_cols=89 Identities=11% Similarity=0.157 Sum_probs=50.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH Q ss_conf 988598876889999999999999999999554089999999999999999999999----9999999999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAK----REVESMISSYEESLAIARA 88 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~----~eae~~~~~~e~~l~eak~ 88 (176) ||.|||.-|++++|=---++.- +|.+...+..+...+..++..+-+.. .++...+++....+.+.-. T Consensus 1 ~pdfdpv~~iN~lFp~e~SL~~---------id~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~ 71 (375) T pfam04100 1 MPDFSALEYINQLFPTEQSLTN---------IDSLIQKIQEEIRRLDANIKTVVRGQANVGEKGKEALDEAQKAIEELFQ 71 (375) T ss_pred CCCCCHHHHHHHHCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999889999885999688861---------7999999999999987999999998860111168899999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781086|r 89 HAKEIIDKVVAAAEQNLEFQREV 111 (176) Q Consensus 89 ea~~ii~~a~~~a~~~~e~~~~~ 111 (176) +..+|.+.| .+.+..+.++... T Consensus 72 kI~~Ik~kA-~~sE~~V~eit~d 93 (375) T pfam04100 72 KIKEIKSKA-ESTEEMVKEITRD 93 (375) T ss_pred HHHHHHHHH-HHHHHHHHHHHHH T ss_conf 999999999-9899999999987 No 108 >KOG2302 consensus Probab=82.08 E-value=4 Score=20.67 Aligned_cols=55 Identities=20% Similarity=0.418 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999995540899-----99999999999999999999999999999999999999 Q gi|254781086|r 27 WLAIIFGIFYWVTHRFILPRLSS-----IMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIAR 87 (176) Q Consensus 27 w~~I~F~il~~il~~~~~~pi~~-----~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak 87 (176) |.++-|++||+|+..|++.-... +.+-|+. .++++++.--|+.+...++++.+|+ T Consensus 1360 wmllYfIsfllIvsffVlnmfVgvvvenfhKcrqh------qe~EeArRreEKrLrrlekkrR~Aq 1419 (1956) T KOG2302 1360 WMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQH------QEAEEARRREEKRLRRLEKKRRAAQ 1419 (1956) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 78999999999999999999999999999999887------7889998889999999999887504 No 109 >pfam02699 YajC Preprotein translocase subunit. See. Probab=81.74 E-value=2.4 Score=22.02 Aligned_cols=20 Identities=45% Similarity=0.820 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 88999999999999999999 Q gi|254781086|r 22 LSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 22 ~~q~fw~~I~F~il~~il~~ 41 (176) +++++++++.|++|||++.+ T Consensus 3 ~~~ll~~v~i~~i~yf~~iR 22 (83) T pfam02699 3 LSSLLPLVLIFAIFYFLLIR 22 (83) T ss_pred HHHHHHHHHHHHHHHHHEEC T ss_conf 57899999999999874150 No 110 >pfam01972 SDH_sah Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan. Probab=80.12 E-value=4.7 Score=20.25 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=23.6 Q ss_pred CCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88598876889999-99999999999999955408999999999999999999999 Q gi|254781086|r 14 PPFDTSTFLSQFFW-LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSA 68 (176) Q Consensus 14 pqld~~~f~~q~fw-~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~ 68 (176) |-+||-+++..+|| ++..|.++.=++.+ +.++.++..+-..++.-+.. T Consensus 2 ~~~d~~~~~~~l~~~l~fi~~~l~P~l~~-------~~l~~~R~~~i~~ie~kr~s 50 (286) T pfam01972 2 IYGDPMSSLSSLFWFLLFFYLIIAPQMKM-------RQLIMARLRCIREIERKRGS 50 (286) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCC T ss_conf 46451568999999999999999999999-------99999999999999997388 No 111 >TIGR00496 frr ribosome recycling factor; InterPro: IPR002661 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth . Thus ribosomes are 'recycled' and ready for another round of protein synthesis.; GO: 0006412 translation. Probab=80.02 E-value=1.4 Score=23.55 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) |+.+||++. +.|++.|..-=..||+.+-..-....+....+.... +-.++-++....+...+++.....-+.++... T Consensus 91 R~~~PplT~--ErRke~~K~aKk~~E~~kvavRNvRrDand~vKkle-Kd~eisED~~~~~~e~iQK~TD~yikkid~~~ 167 (177) T TIGR00496 91 RINFPPLTE--ERRKELVKVAKKIAEQAKVAVRNVRRDANDKVKKLE-KDKEISEDEERKLQEEIQKITDEYIKKIDEIL 167 (177) T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 025889874--667877888764321013355200264788999852-47888800456557787426488889999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) .+-+++ T Consensus 168 ~~KE~e 173 (177) T TIGR00496 168 KDKEKE 173 (177) T ss_pred HHHHHH T ss_conf 988998 No 112 >COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] Probab=78.46 E-value=5.3 Score=19.93 Aligned_cols=64 Identities=11% Similarity=0.262 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999999999999999999984159999999999999421069 Q gi|254781086|r 112 FEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDAF 176 (176) Q Consensus 112 a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i~~~~~~i~~~ 176 (176) ..+....++.++...++..+.....+|.+.+..++..++.+. ...+.+.+...|.+.+..+..| T Consensus 93 ~~e~~~~li~~~~~~~~~~~~~~e~qLv~lvl~ia~~Vi~~~-~~~~~~~ll~~v~e~L~~~~~~ 156 (234) T COG1317 93 VLERLAKLIAEFQAELEALKEVVEKQLVQLVLEIARKVIGKE-LELDPEALLAAVREALEEVPLF 156 (234) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHCC T ss_conf 999999999999999999999999999999999999998565-3128899999999999971166 No 113 >PRK05183 hscA chaperone protein HscA; Provisional Probab=78.21 E-value=5.4 Score=19.89 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=41.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID 128 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~ 128 (176) ++.|...+.+|+...++ ......+.+++.++..++........+..+..-.+-...++..+...++.+. T Consensus 511 ~~ei~~m~~~a~~~~~~-----D~~~r~~~e~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~i~~~~~~l~~~~~ 579 (621) T PRK05183 511 DDEIARMLKDSMSNAEE-----DMKARALAEQQVEAERVLEALQAALAADGDLLSADERAAIDAAMAALRALAQ 579 (621) T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999987998-----8986998998988999999999999955440999999999999999999872 No 114 >pfam10961 DUF2763 Protein of unknown function (DUF2763). This eukaryotic family of proteins has no known function. Probab=77.52 E-value=2.3 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=16.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 598876889999999999999999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWVT 39 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~il 39 (176) ..+ .|++.+||-+++|+.+||-- T Consensus 16 Wrl-s~i~d~fwgi~~~I~~FF~T 38 (91) T pfam10961 16 WRL-SIIVDFFWGIVNFISLFFRT 38 (91) T ss_pred CCH-HHHHHHHHHHHHHHHHHHHH T ss_conf 025-89999999999999999999 No 115 >MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional Probab=77.48 E-value=3.6 Score=20.94 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=23.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9885988768899999999999999999995540 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPR 46 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~~~~p 46 (176) |||.-|=-|....+-+.+.|+++..+ .+|-+.| T Consensus 1 MPQMaPm~W~~L~i~F~~~~iif~~m-nyF~~~p 33 (52) T MTH00158 1 MPQMAPMNWLLLFIFFSITFIIFNSM-NYFSYSP 33 (52) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCC T ss_conf 98643089999999999999999988-8876078 No 116 >pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP. Probab=77.30 E-value=5.7 Score=19.73 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999999999999999999999999999999 Q gi|254781086|r 47 LSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEI 93 (176) Q Consensus 47 i~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~i 93 (176) -..-+..|-..+...+..+....++++..+..+++.+.+++.+.... T Consensus 599 ~e~~l~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~i~~~~~~i~~~ 645 (1192) T pfam12128 599 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEAKRAVTEA 645 (1192) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999999999999999999999999999999999999999999 No 117 >COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion] Probab=76.68 E-value=5.4 Score=19.87 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=23.1 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 453346899885988768899999999999999999995540899999999 Q gi|254781086|r 5 SSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR 55 (176) Q Consensus 5 ~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~ 55 (176) ...++..|||....-+|...+.|++ +.++.|++-.+++.|+...+..|. T Consensus 425 ~~~~e~~~~~~~~~~~~~~~~~~~~--~~l~~~lv~~~~~r~~i~~~~~~~ 473 (545) T COG1766 425 QEAEEGDGKPEWETQSFLDSLIPVA--LYLVVFLVLFIIVRPVIRPRRRRG 473 (545) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 3211134314442034687999999--999999999999999999875155 No 118 >PRK00247 putative inner membrane protein translocase component YidC; Validated Probab=76.33 E-value=6.1 Score=19.56 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999 Q gi|254781086|r 84 AIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ 131 (176) Q Consensus 84 ~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k 131 (176) .+...+...+.++.+++.+.+.. +.+++..+..+++.+|..++ T Consensus 323 a~l~~q~~~~~~~~~~~~~~~~~-----~~~~~~~kr~~~~r~~~~~~ 365 (422) T PRK00247 323 AELHAQNVELTKERTEEINAEKA-----AKKEIANKRREAEREINRAK 365 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHH T ss_conf 67887657888998999877522-----63121044430465643999 No 119 >COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion] Probab=75.56 E-value=4.4 Score=20.40 Aligned_cols=40 Identities=8% Similarity=0.198 Sum_probs=26.7 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33468998859887688999999999999999999955408 Q gi|254781086|r 7 SDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 7 ~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) +.+.++| +.+..+.++.++-.+..|+++.|+++||...|. T Consensus 14 e~~~~~~-~~~~~~~~gsL~~iL~lil~~~wl~kr~~~~~~ 53 (137) T COG3190 14 ELEPASA-ALELAQMFGSLILILALILFLAWLVKRLGRAPL 53 (137) T ss_pred CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 3346530-669999999999999999999999999841436 No 120 >COG3462 Predicted membrane protein [Function unknown] Probab=74.49 E-value=5.5 Score=19.80 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=10.9 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 598876889999999999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFG 33 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~ 33 (176) |-.-+++..+||.++..+ T Consensus 46 ~yGm~lImpI~~~vvli~ 63 (117) T COG3462 46 LYGMWLIMPIFWAVVLIF 63 (117) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 223499999999999999 No 121 >TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure , and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts . This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication. Probab=73.23 E-value=7.3 Score=19.08 Aligned_cols=136 Identities=14% Similarity=0.202 Sum_probs=88.9 Q ss_pred CCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8598876889--9999999999999999995540-8----9999999999999999999999999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQ--FFWLAIIFGIFYWVTHRFILPR-L----SSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIAR 87 (176) Q Consensus 15 qld~~~f~~q--~fw~~I~F~il~~il~~~~~~p-i----~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak 87 (176) -||-++.-|. +.|.++.=---|.+-.|+.+|. | ...+-+-.+.|..-++.....+.+.++..+..++.+.+.. T Consensus 501 ~fD~Etl~PtY~ll~g~~G~S~AF~iA~r~G~P~~iie~AK~~~g~~~e~~n~~ie~L~~~~k~~~~~~~~~e~~lkE~E 580 (834) T TIGR01069 501 LFDEETLSPTYKLLFGVPGRSYAFEIAQRLGIPSEIIEQAKEKYGEFKEEINELIEKLSEKEKELEEKKEELEKLLKELE 580 (834) T ss_pred HHCHHHCCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 62334227431220037871068899998479888999986742640568999998479999999999998999999989 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999-99999999999999 Q gi|254781086|r 88 AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE-VYSIVGEVTKDLVR 151 (176) Q Consensus 88 ~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~e-i~~~a~~~a~~i~~ 151 (176) ...+++-... .+......+...++.++..+.+..+.++++..-.++... +.......+..+++ T Consensus 581 ~~~~e~~~~~-~~l~~~~~~~~~~~~~e~~e~l~~~~~E~e~~~~~~~~~k~~~~~~~~~~e~l~ 644 (834) T TIGR01069 581 KLKKELEQEI-EELKERERNLKKELEKEAQEALKALKKEVEEIIRELKEKKIEKAKEKKSIELLE 644 (834) T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999999-999999877789999999999999999999999997415767888888899987 No 122 >PRK11267 biopolymer transport protein ExbD; Provisional Probab=72.19 E-value=3.5 Score=21.00 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=26.0 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 97564533468998859887688999999999999 Q gi|254781086|r 1 MASSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIF 35 (176) Q Consensus 1 ~~~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il 35 (176) |..+...+..|.|+..|.+=++.=+|-++|+|.+- T Consensus 3 ~~~~~~~~d~~~~~eINltPlIDVvfvLLIfFmvt 37 (141) T PRK11267 3 MHLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVA 37 (141) T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 11578988777434124765899999999999950 No 123 >PRK13953 mscL large-conductance mechanosensitive channel; Provisional Probab=71.68 E-value=6.5 Score=19.35 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999995540899999999 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR 55 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~ 55 (176) +.+..-+|+|+|.-+++ +++.+++.+..+.|+ T Consensus 67 G~fl~aiInFlIia~vv-fl~Vk~~n~~~~~~~ 98 (127) T PRK13953 67 GAFIQSIVDFLIIAFAI-FIFVKLLTSFIKKKE 98 (127) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC T ss_conf 99999999999999999-999999999988402 No 124 >PRK08024 consensus Probab=70.82 E-value=8.2 Score=18.73 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=39.1 Q ss_pred CCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH Q ss_conf 8998859887688999--999999999999999--------955408999999999999999999--9999999999999 Q gi|254781086|r 11 SRFPPFDTSTFLSQFF--WLAIIFGIFYWVTHR--------FILPRLSSIMEVRRNLISSDQEKM--DSAKREVESMISS 78 (176) Q Consensus 11 ~gmpqld~~~f~~q~f--w~~I~F~il~~il~~--------~~~~pi~~~l~~R~~~I~~~l~~A--~~~~~eae~~~~~ 78 (176) ..||+|..++..+-.+ |+.|.|+-++.+|-. ++.-=+-.++..|+.-+..+|..| +....+.+++..+ T Consensus 2 ~~~~~f~~~~l~pry~~~wl~i~ll~l~~~LP~~~~~~lg~~lg~l~y~~~~~rr~ia~~NL~~aFPe~s~~e~~~i~~~ 81 (306) T PRK08024 2 TNLPKFSRALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGLGRLAMRFMKRRAKIAHRNLELCFPEMSEQERRAMVVK 81 (306) T ss_pred CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 97997723430816899999999999999887999999999999999986436989999999986899999999999999 No 125 >pfam05680 ATP-synt_E ATP synthase E chain. This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit. Probab=70.29 E-value=8.5 Score=18.66 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=25.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 988598876889999999999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRF 42 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~ 42 (176) ||+...+-++.-+=|.++..+|+|...+.. T Consensus 1 m~~~~vsp~i~~~R~saL~~Gi~yGa~h~~ 30 (81) T pfam05680 1 MPPVTVSPLINVLRYSALVAGVVYGAKHQR 30 (81) T ss_pred CCCCEECHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 997000258999999999999999899998 No 126 >PRK01433 hscA chaperone protein HscA; Provisional Probab=69.92 E-value=8.6 Score=18.61 Aligned_cols=71 Identities=15% Similarity=0.001 Sum_probs=39.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDM 130 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~ 130 (176) ++.|...+.+|++..++= .....+.+++.++..++...........+..-+.-...++..+.+.++.|... T Consensus 484 ~~ei~~m~~~a~~~~~~d-----~~~r~~~e~~~~~e~~~~~~~~~l~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ 554 (595) T PRK01433 484 KTEIDIMLENAYKNAKID-----YTTRLLQEAIIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAIKAR 554 (595) T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999989999-----99999999999999999999999997455099999999999999999998667 No 127 >pfam04612 GspM General secretion pathway, M protein. This is a family of membrane proteins involved in the secretion of a number of molecules in Gram-negative bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers. Probab=69.18 E-value=8.9 Score=18.52 Aligned_cols=52 Identities=6% Similarity=-0.032 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999554089999999999999999999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESM 75 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~ 75 (176) |..-.+..+++++++++.++|-|+....+.-+..+....+........+... T Consensus 16 q~ll~~~~~~l~~~l~y~~lw~Pl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (159) T pfam04612 16 QRLLAVLGAVLLLVLLYLGLWQPLSQRRARAQRRLQAARQLLAWLQEQAPEI 67 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999998899999999999999999999999999999 No 128 >TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component; InterPro: IPR011299 This entry represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport . Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name 'PTS system, glucose-specific IIABC component' while the Bacillus subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains . This group is most closely related to the N-acetylglucosamine-specific PTS enzymes (IPR010974 from INTERPRO).; GO: 0005355 glucose transmembrane transporter activity, 0015758 glucose transport, 0016021 integral to membrane. Probab=68.63 E-value=4 Score=20.65 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999955408999999 Q gi|254781086|r 34 IFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 34 il~~il~~~~~~pi~~~l~~ 53 (176) ++..++-.|+||||.+.|+. T Consensus 191 iv~Gi~L~F~WPPvq~~ln~ 210 (518) T TIGR02002 191 IVVGIVLSFVWPPVQDALNT 210 (518) T ss_pred HHHHHHHHHCCCCHHHHHHH T ss_conf 99989985047866468999 No 129 >PRK13952 mscL large-conductance mechanosensitive channel; Provisional Probab=68.33 E-value=9 Score=18.51 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=20.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8998859887688999999999999999999955408999 Q gi|254781086|r 11 SRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI 50 (176) Q Consensus 11 ~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~ 50 (176) .|.|-++.-.|++ -+|+|+|.-+.+ +++.+|+.+. T Consensus 77 ~g~~~i~yG~fl~----avInFlIiA~vv-F~vVk~~nkl 111 (143) T PRK13952 77 AGAPVFAYGNFIT----VLINFLILAFII-FLMVKAINRL 111 (143) T ss_pred CCCCEEEHHHHHH----HHHHHHHHHHHH-HHHHHHHHHH T ss_conf 3651020999999----999999999999-9999999998 No 130 >PRK09702 arbutin specific enzyme IIB component of PTS; Provisional Probab=67.15 E-value=9.5 Score=18.36 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=16.9 Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHH Q ss_conf 8876889----999999999999999999554 Q gi|254781086|r 18 TSTFLSQ----FFWLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 18 ~~~f~~q----~fw~~I~F~il~~il~~~~~~ 45 (176) +..|+.| ++|.+|-|++|+|++.||=++ T Consensus 6 ~~~~~~~I~vGlv~~~iYY~vF~flI~KfNlk 37 (161) T PRK09702 6 ADMMLTQIAIGLCFTLLYFVVFRTLILQFNMC 37 (161) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 88999999999999989999999999984899 No 131 >KOG4759 consensus Probab=66.86 E-value=10 Score=18.23 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 72 VESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQ 131 (176) Q Consensus 72 ae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k 131 (176) +....++|...+..++.++..-+...... ..++....++.+++.+...+.+.++..- T Consensus 197 ~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263) T KOG4759 197 LKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998999999999999988888736344---7845899999999999999999999999 No 132 >MTH00186 ATP8 ATP synthase F0 subunit 8; Provisional Probab=66.75 E-value=6 Score=19.58 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=7.9 Q ss_pred CCCCCHHHHH Q ss_conf 9885988768 Q gi|254781086|r 13 FPPFDTSTFL 22 (176) Q Consensus 13 mpqld~~~f~ 22 (176) ||||-|-.|. T Consensus 1 MPQLSPmnWa 10 (51) T MTH00186 1 MPQLSPMNWA 10 (51) T ss_pred CCCCCCCHHH T ss_conf 9856753127 No 133 >COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism] Probab=66.55 E-value=10 Score=18.19 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5408999999999999999999 Q gi|254781086|r 44 LPRLSSIMEVRRNLISSDQEKM 65 (176) Q Consensus 44 ~~pi~~~l~~R~~~I~~~l~~A 65 (176) ...+..-++.+...+...+..+ T Consensus 24 Ir~lq~~~e~k~~~l~e~l~~~ 45 (175) T COG4741 24 IRSLQGKVESKARELEETLQKA 45 (175) T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999998899999999999 No 134 >pfam12072 DUF3552 Domain of unknown function (DUF3552). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Probab=66.32 E-value=10 Score=18.16 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999995540899999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSD 61 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~ 61 (176) ++-++|.|++-||+.+.+.-..+...-..-..-|.+. T Consensus 7 i~~~~iG~~~G~~~~~~~~~~~~~~a~~~A~~Ii~~A 43 (201) T pfam12072 7 IIALVVGFAIGYFVRKSIAEAKISSAEEEAKQIIEEA 43 (201) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999978999999999999999 No 135 >COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane] Probab=65.94 E-value=5.5 Score=19.82 Aligned_cols=19 Identities=32% Similarity=0.786 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 8899999999999999999 Q gi|254781086|r 22 LSQFFWLAIIFGIFYWVTH 40 (176) Q Consensus 22 ~~q~fw~~I~F~il~~il~ 40 (176) .+.+||+++.|+++||-++ T Consensus 19 ~s~lfw~~vi~~l~yf~l~ 37 (372) T COG3524 19 LSPLFWVTVIIILVYFGLF 37 (372) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 4108999999999998774 No 136 >PRK11466 hybrid sensory histidine kinase TorS; Provisional Probab=64.25 E-value=11 Score=17.92 Aligned_cols=33 Identities=3% Similarity=0.090 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999554089999999999999 Q gi|254781086|r 28 LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS 60 (176) Q Consensus 28 ~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~ 60 (176) .++.|+++++++|+|+|..|..=+.+....+.. T Consensus 337 ~~l~l~~~~~v~w~vvy~~i~~rL~~~t~al~~ 369 (912) T PRK11466 337 GIVSLCALILILWRVVYRSVTRPLAEQTQALQR 369 (912) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 137 >PRK00290 dnaK molecular chaperone DnaK; Provisional Probab=63.59 E-value=12 Score=17.84 Aligned_cols=94 Identities=9% Similarity=0.066 Sum_probs=58.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999999----9 Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD----M 130 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~----~ 130 (176) ++.|+..+++|+...++=. ..+.+.++|.++..++-.++.......+..-.+-+..++..+.+++.-+.. . T Consensus 504 ~~ei~~m~~~a~~~~~~D~-----~~~~~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 578 (631) T PRK00290 504 EEEIERMVKDAEANAEEDK-----KRKEEVEARNQADSLIYQTEKQLKELGDKVPADEKEKIEAAIKELKEALKGEDKEA 578 (631) T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHH T ss_conf 9999999999998899899-----99999999999999999999999863520999999999999999999875589999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781086|r 131 QKKASQEVYSIVGEVTKDLVRKL 153 (176) Q Consensus 131 k~~a~~ei~~~a~~~a~~i~~kl 153 (176) -+....++.+.+..++..+..+- T Consensus 579 ~~~~~~~l~~~~~~~~~~~~~~~ 601 (631) T PRK00290 579 IKAKTEELQQASQKLGEAMYQQA 601 (631) T ss_pred HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999999855 No 138 >PRK04778 septation ring formation regulator EzrA; Provisional Probab=62.94 E-value=12 Score=17.77 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH Q ss_conf 999999955408999999999999-----999999999 Q gi|254781086|r 36 YWVTHRFILPRLSSIMEVRRNLIS-----SDQEKMDSA 68 (176) Q Consensus 36 ~~il~~~~~~pi~~~l~~R~~~I~-----~~l~~A~~~ 68 (176) ++++++-.++.| .-++.|+..|. ..+.....+ T Consensus 20 ~~~~rr~~~k~I-~~Le~rK~~l~~~pv~~el~kvk~L 56 (569) T PRK04778 20 GYILRKRNYKRI-DELEERKQELEDLPVNEELEKVKKL 56 (569) T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHCC T ss_conf 999999999899-9999999998769879999988808 No 139 >COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones] Probab=62.78 E-value=8 Score=18.81 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999995540899 Q gi|254781086|r 26 FWLAIIFGIFYWVTHRFILPRLSS 49 (176) Q Consensus 26 fw~~I~F~il~~il~~~~~~pi~~ 49 (176) +|.++.|.+|++.+.+++|.|=.+ T Consensus 12 a~~t~~~~l~fiavi~~ayr~~~K 35 (60) T COG4736 12 AWGTIAFTLFFIAVIYFAYRPGKK 35 (60) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 999999999999999999661210 No 140 >PRK00567 mscL large-conductance mechanosensitive channel; Reviewed Probab=62.63 E-value=11 Score=17.95 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=20.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999955408999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI 50 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~ 50 (176) -++.-.|++ -+|+|+|.-+++ +++.+|+.+. T Consensus 70 ~i~yG~fl~----aiInFlIia~vv-FliVk~~nk~ 100 (134) T PRK00567 70 TINYGVFIN----AVIDFLIIAFAI-FLVVKLINKL 100 (134) T ss_pred EECHHHHHH----HHHHHHHHHHHH-HHHHHHHHHH T ss_conf 001409999----999999999999-9999999998 No 141 >COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion] Probab=62.60 E-value=9.4 Score=18.37 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=21.1 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 346899885988768899999999999999999995540 Q gi|254781086|r 8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPR 46 (176) Q Consensus 8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~p 46 (176) |+.++-+++||..-. .+..++..++++-.+++|| T Consensus 24 Eee~~~ikidP~~vV-----~~~~av~~lvi~a~~f~p~ 57 (57) T COG4023 24 EEEIKGIKIDPRLVV-----YAGIAVAILVIAAHIFAPP 57 (57) T ss_pred CCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHCCC T ss_conf 136577442841367-----8999999999999862699 No 142 >PRK06531 yajC preprotein translocase subunit YajC; Validated Probab=62.08 E-value=12 Score=17.67 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNL 57 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~ 57 (176) +|.+.|=.+--.+|++. T Consensus 17 ffmiRpQkK~qke~q~m 33 (120) T PRK06531 17 FFMQRQQKKQAQERQNQ 33 (120) T ss_pred HHEECHHHHHHHHHHHH T ss_conf 86037488999999999 No 143 >PRK10361 DNA recombination protein RmuC; Provisional Probab=61.91 E-value=12 Score=17.65 Aligned_cols=12 Identities=25% Similarity=0.193 Sum_probs=4.7 Q ss_pred CHHHHHHHHHHH Q ss_conf 988768899999 Q gi|254781086|r 17 DTSTFLSQFFWL 28 (176) Q Consensus 17 d~~~f~~q~fw~ 28 (176) |.+.++.-++.+ T Consensus 2 ~~~~~i~~i~al 13 (475) T PRK10361 2 DFSIMVYAVIAL 13 (475) T ss_pred CHHHHHHHHHHH T ss_conf 277999999999 No 144 >PRK00888 ftsB cell division protein FtsB; Reviewed Probab=61.57 E-value=13 Score=17.61 Aligned_cols=19 Identities=5% Similarity=-0.005 Sum_probs=8.2 Q ss_pred HHHHHHHHHHHHH-HHHHHH Q ss_conf 9999999999999-999554 Q gi|254781086|r 27 WLAIIFGIFYWVT-HRFILP 45 (176) Q Consensus 27 w~~I~F~il~~il-~~~~~~ 45 (176) |+++.++++++++ +.++|. T Consensus 3 ~l~~~L~~ll~~LQY~lwfg 22 (105) T PRK00888 3 LLTLVLLALLVWLQYPLWFG 22 (105) T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 69999999999999999404 No 145 >pfam06635 NolV Nodulation protein NolV. This family consists of several nodulation protein NolV sequences from different Rhizobium species. The function of this family is unclear. Probab=61.44 E-value=13 Score=17.60 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=41.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 999999999999999999999----9999999999999999999999999999999999999999999999999841599 Q gi|254781086|r 84 AIARAHAKEIIDKVVAAAEQN----LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSD 159 (176) Q Consensus 84 ~eak~ea~~ii~~a~~~a~~~----~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~ 159 (176) .-|+.++..++..++...+.. .++-..+...+....+.+...+...... .+.+...+++..+++++++..++ T Consensus 37 eAA~~~A~~vr~~A~~ayE~~r~~Gye~G~~~g~~E~A~li~qt~ae~~~y~a----~lE~~l~~lVle~vRkiLg~fD~ 112 (207) T pfam06635 37 AAAERHLQHVRGWARAAYERELAQGHAEGAKAGAEEMAALIAQATAELAQRKA----VLEQELPQLVFEILRDLLGAFDP 112 (207) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCH T ss_conf 99999999999999999999999889999999999999999999999999999----99999999999999999860494 Q ss_pred HHH-HHHHHHHHHH Q ss_conf 999-9999999942 Q gi|254781086|r 160 ADV-QKILDRKRDG 172 (176) Q Consensus 160 ~~~-~~~i~~~~~~ 172 (176) ... -.+|-..++. T Consensus 113 ~Ell~r~vR~AL~~ 126 (207) T pfam06635 113 GELLVMAVRHAIEQ 126 (207) T ss_pred HHHHHHHHHHHHHH T ss_conf 88999999999998 No 146 >KOG1962 consensus Probab=60.69 E-value=13 Score=17.52 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999955408999999999 Q gi|254781086|r 30 IIFGIFYWVTHRFILPRLSSIMEVRRN 56 (176) Q Consensus 30 I~F~il~~il~~~~~~pi~~~l~~R~~ 56 (176) -.|++|++++-.-+..-|......|.. T Consensus 103 sGf~LFL~lvI~R~~~ll~~l~~l~~~ 129 (216) T KOG1962 103 SGFVLFLSLVIRRLHTLLRELATLRAN 129 (216) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 599999999999999999999998854 No 147 >pfam09851 DUF2078 Predicted membrane protein (DUF2078). This domain, found in various hypothetical prokaryotic proteins, has no known function. Probab=59.80 E-value=13 Score=17.42 Aligned_cols=23 Identities=35% Similarity=0.818 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76889999999999999999999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRF 42 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~ 42 (176) .++..+||+++..++++++++.+ T Consensus 9 ~~~~~i~~~lli~~vv~l~~~~~ 31 (73) T pfam09851 9 GLLMLLFWLLLIAGVVYLLVRLF 31 (73) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999997 No 148 >KOG2629 consensus Probab=58.87 E-value=14 Score=17.32 Aligned_cols=71 Identities=14% Similarity=0.353 Sum_probs=33.5 Q ss_pred CCCCCCCCCHH---HHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46899885988---768---8999999999999999----9999554089999999999999999999999999999999 Q gi|254781086|r 9 FSSRFPPFDTS---TFL---SQFFWLAIIFGIFYWV----THRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISS 78 (176) Q Consensus 9 ~~~gmpqld~~---~f~---~q~fw~~I~F~il~~i----l~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~ 78 (176) .++|||++... ++. -+.|-+++.+..+.|- +++|+.| .++..+++....+...-...-.++.+.+.. T Consensus 64 ~~~~p~~~~~~P~~~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P---~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~ 140 (300) T KOG2629 64 VSGGPPLLIIQPQQNVLRRWRDYFVMAVILAGIAYAAYRFVKSYVLP---RFLGESKDKLEADKRQLDDQFDKAAKSLNA 140 (300) T ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67886265517875310049999999999865788999999998888---760765116777788888999999999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781086|r 79 YEES 82 (176) Q Consensus 79 ~e~~ 82 (176) .+.. T Consensus 141 l~~~ 144 (300) T KOG2629 141 LMDE 144 (300) T ss_pred HHHH T ss_conf 9999 No 149 >cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform. Probab=58.68 E-value=3.6 Score=20.92 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=27.1 Q ss_pred CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 453346899885988--7688999999999999999999955408999999 Q gi|254781086|r 5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) +..++..-|+...++ .-+..+++++...++++++++.|++||.-..|++ T Consensus 59 sF~~t~~e~~~~~~ewk~v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~~~ 109 (136) T cd00922 59 SFGETGPEMNAPTGEWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTE 109 (136) T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 971553336689995168899999999999999999999727989988599 No 150 >MTH00147 ATP8 ATP synthase F0 subunit 8; Provisional Probab=56.95 E-value=10 Score=18.14 Aligned_cols=10 Identities=10% Similarity=0.557 Sum_probs=7.5 Q ss_pred CCCCCHHHHH Q ss_conf 9885988768 Q gi|254781086|r 13 FPPFDTSTFL 22 (176) Q Consensus 13 mpqld~~~f~ 22 (176) ||||-|=.|+ T Consensus 1 MPQLSPiNWi 10 (51) T MTH00147 1 MPQLSPINWI 10 (51) T ss_pred CCCCCCHHHH T ss_conf 9966715899 No 151 >PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional Probab=56.39 E-value=15 Score=17.07 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76889999999999999999999554089999999999999999999999999999999999999999999999999999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVA 99 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~ 99 (176) +|+.-+.|++|..+|-+++ .|+.-+.+ .++..++.+|+.++ ..+++|+..+.+==.+..++++.... T Consensus 2 ~W~~ali~lvvGiiIG~~~-~R~~~~~~-----~~q~~Le~eLe~~k-------~el~~Yr~ev~~HF~~tA~Ll~~l~~ 68 (134) T PRK11677 2 TWEYALIGLVVGIIIGAVA-MRFGNRKL-----RQQQALQYELEKNK-------AELEEYRQELVDHFARSAELLDTMAK 68 (134) T ss_pred CHHHHHHHHHHHHHHHHHH-HHHCCCCH-----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2899999999999999999-99817511-----67999999999999-------99999999999999999999999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254781086|r 100 AAEQNLEF 107 (176) Q Consensus 100 ~a~~~~e~ 107 (176) .-.+..+. T Consensus 69 ~Y~~lyqH 76 (134) T PRK11677 69 DYRQLYQH 76 (134) T ss_pred HHHHHHHH T ss_conf 99999999 No 152 >KOG0206 consensus Probab=55.95 E-value=16 Score=17.02 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 768899999999999999999995540899999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME 52 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~ 52 (176) ++.+..||+++.|+.+.-++.+|+|.-+...+- T Consensus 1046 ~~~~p~fWl~~ll~~v~~Llp~~~~~~l~~~~~ 1078 (1151) T KOG0206 1046 LLSSPSFWLTLLLTVVAALLPDFVYKSLQRTFF 1078 (1151) T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 726725778889999998759999999877718 No 153 >PRK13954 mscL large-conductance mechanosensitive channel; Provisional Probab=54.85 E-value=14 Score=17.27 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999554089999 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSSIM 51 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l 51 (176) +.+..-+|+|+|.-+++ +++.+++.+.. T Consensus 64 G~fl~avInFlIiA~vi-F~~Vk~~n~~~ 91 (120) T PRK13954 64 GLFIQSVIDFIIIAFAL-FIFVKIANTLM 91 (120) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH T ss_conf 99999999999999999-99999999987 No 154 >KOG2927 consensus Probab=54.70 E-value=7 Score=19.18 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH Q ss_conf 88768899999999999999999----99554089 Q gi|254781086|r 18 TSTFLSQFFWLAIIFGIFYWVTH----RFILPRLS 48 (176) Q Consensus 18 ~~~f~~q~fw~~I~F~il~~il~----~~~~~pi~ 48 (176) ..+|+...|-.+|.|+|.+++.. .++||-|. T Consensus 229 l~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~ 263 (372) T KOG2927 229 LAFILVLAIVRLILFGITWILTGGKHGFWLFPNLT 263 (372) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHH T ss_conf 99999999999999999999737877257536256 No 155 >COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane] Probab=53.44 E-value=17 Score=16.77 Aligned_cols=36 Identities=6% Similarity=0.195 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999 Q gi|254781086|r 116 LLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVR 151 (176) Q Consensus 116 i~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~ 151 (176) ......+.++.+.....+..+.+-+.+......+++ T Consensus 102 ~~~k~~~~~~~~~~~~~e~~~~~~~~i~~ai~~~a~ 137 (170) T COG2825 102 FNKKQQEYEKDLNRREAEEEQKLLEKIQRAIESVAE 137 (170) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999998789999999999999999999 No 156 >pfam11044 TMEMspv1-c74-12 Plectrovirus spv1-c74 ORF 12 transmembrane protein. This is a family of proteins expressed by Plectroviruses. The plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. Except that it is a putative transmembrane protein the function is not known. Probab=53.30 E-value=17 Score=16.76 Aligned_cols=34 Identities=26% Similarity=0.643 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76889999999999999999999554089999999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR 54 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R 54 (176) +|++-+|-.+|.+.+|.|+.--. |.+|..+--+. T Consensus 3 twlt~ifsvviil~if~~~glsi-yqki~qirgKK 36 (49) T pfam11044 3 TWLTTIFSVVIILGVFAWIGLSI-YQKIRQIRGKK 36 (49) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC T ss_conf 49999999999999999999999-99999986631 No 157 >COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only] Probab=52.94 E-value=17 Score=16.72 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=58.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999995540899999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 27 WLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLE 106 (176) Q Consensus 27 w~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e 106 (176) -.+|.|++|..++... ++++...|++-...++.--...+-...+.+.++.+.+...++.+.+...+-. .-.+-+... T Consensus 10 iiAiAf~vL~I~li~t-lkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~--vf~aV~dl~ 86 (139) T COG4768 10 IIAIAFLVLVIYLIIT-LKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDP--VFDAVKDLG 86 (139) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH T ss_conf 9999999999999999-9987789999999999999987777887899999998999998622876748--999998787 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|254781086|r 107 FQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 107 ~~~~~a~~ei~~~~~~a~~~I 127 (176) +.....++.....-..+-... T Consensus 87 ~SV~~ln~s~r~~~~~~t~~~ 107 (139) T COG4768 87 QSVSDLNQSVRHLATRATNAV 107 (139) T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 889999999999999985676 No 158 >PRK11091 aerobic respiration control sensor protein ArcB; Provisional Probab=52.80 E-value=18 Score=16.71 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=45.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55408999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 43 ILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSN 122 (176) Q Consensus 43 ~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~ 122 (176) ++.-+..-++.-+....+-++.-+..++.=..+..+.+..+...+.|..+ +..+++.+..+..+.+.|+.+. .+ T Consensus 72 f~~~~v~~le~sr~~l~~~v~~l~~~r~~d~~ln~~l~~ni~~ln~ei~~-----r~~a~~~~~~~~~~l~~e~~~r-~~ 145 (779) T PRK11091 72 FLSVVVEQLEESRQRLSRLVQKLEEMRERDLELNVQLKDNIAQLNQEIAE-----REKAEEARQEAFEDLKNEIKER-EE 145 (779) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HH T ss_conf 99999999999999999999999998887888888888778886678888-----8888999999999999999998-99 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254781086|r 123 AQNEIDD 129 (176) Q Consensus 123 a~~~I~~ 129 (176) ++.++.+ T Consensus 146 ~q~~l~~ 152 (779) T PRK11091 146 TQIELEQ 152 (779) T ss_pred HHHHHHH T ss_conf 9999999 No 159 >TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase; InterPro: IPR006539 These sequences represent the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other . These ATPases are found only in eukaryotes. ; GO: 0000287 magnesium ion binding, 0004012 phospholipid-translocating ATPase activity, 0005524 ATP binding, 0015914 phospholipid transport, 0016021 integral to membrane. Probab=52.61 E-value=18 Score=16.69 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=33.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998859887688999999999999999999955408999999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) -|-...+.++.+-.||+.+..++++=++.+|.|+-+.+.+.- T Consensus 1200 ~~~~~~~~~~~t~~FW~~l~v~~~~~Llp~F~~~~~~~~~~P 1241 (1249) T TIGR01652 1200 EFYKAAKRVMSTFGFWLVLLVIVLISLLPRFTYKALQRLFRP 1241 (1249) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 241102210002889999999999998799999999997289 No 160 >pfam05545 FixQ Cbb3-type cytochrome oxidase component FixQ. This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon. Probab=50.84 E-value=19 Score=16.52 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999995540899 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSS 49 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~ 49 (176) .+.+++++.|++|+.++.+.++|.=++ T Consensus 10 a~~~~~l~~~~~Figiv~wa~~p~~k~ 36 (49) T pfam05545 10 ARSWGTLVLFVFFIGIVFWAYSPRRKK 36 (49) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 999999999999999999872877504 No 161 >pfam06160 EzrA Septation ring formation regulator, EzrA. During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. Probab=50.59 E-value=19 Score=16.49 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999955408999999999999 Q gi|254781086|r 27 WLAIIFGIFYWVTHRFILPRLSSIMEVRRNLIS 59 (176) Q Consensus 27 w~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~ 59 (176) -++|.|++ .+++++-.++.| .-++.|+..|. T Consensus 8 ivii~~~~-~~~~rk~~~k~I-~~Le~rk~~l~ 38 (559) T pfam06160 8 IVIVAYLA-GYFLRKKIYKQI-DELEERKEELM 38 (559) T ss_pred HHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHH T ss_conf 99999999-999988899999-99999999987 No 162 >PRK05886 yajC preprotein translocase subunit YajC; Validated Probab=49.87 E-value=20 Score=16.42 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254781086|r 28 LAIIFGIFYWVTHR 41 (176) Q Consensus 28 ~~I~F~il~~il~~ 41 (176) +++.|++|||++.| T Consensus 10 lili~~vf~f~~iR 23 (108) T PRK05886 10 FLLIMGGFMYFASR 23 (108) T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999999316 No 163 >COG4046 Uncharacterized protein conserved in archaea [Function unknown] Probab=49.69 E-value=20 Score=16.40 Aligned_cols=27 Identities=4% Similarity=0.106 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254781086|r 57 LISSDQEKMDSAKREVESMISSYEESL 83 (176) Q Consensus 57 ~I~~~l~~A~~~~~eae~~~~~~e~~l 83 (176) .|.+.+...++...++.+...++...- T Consensus 44 ~Ieg~l~~le~~~~~a~~~~~~~~~~~ 70 (368) T COG4046 44 YIEGALAELEKMENDAMKKVVELAVPR 70 (368) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 788899999998889999999985122 No 164 >COG3224 Uncharacterized protein conserved in bacteria [Function unknown] Probab=49.59 E-value=19 Score=16.47 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999995540899999 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSSIME 52 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~ 52 (176) +..-|++|+-++.+.++-||+.|-+.+++. T Consensus 149 ~l~~~~Li~t~~~v~LltYf~iP~vs~l~~ 178 (195) T COG3224 149 PLPTRVLIGTLCSVSLLTYFVIPLVSRLYA 178 (195) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 800999999999999887888888888888 No 165 >KOG4403 consensus Probab=49.46 E-value=20 Score=16.38 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=30.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998859887688999999999999999999955408999999999999999999999999999999999999999999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAH 89 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~e 89 (176) |-|-.++..|.-. | ++.|+++..+..+|++-.=.+.-.+.-.+..++++.-.. |++.+.+.++.|.+|+.+ T Consensus 204 Gpp~~~~~n~~KD-~--iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~----aEqsl~dlQk~Lekar~e 274 (575) T KOG4403 204 GPPYKTNHNWTKD-F--ILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQR----AEQSLEDLQKRLEKAREE 274 (575) T ss_pred CCCCCCCCCHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH T ss_conf 6875788631356-8--999999998605554544316789999999988888888----998999999999999875 No 166 >TIGR01932 hflC HflC protein; InterPro: IPR010200 HflK and HflC are paralogs encoded by tandem genes in proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. ; GO: 0005515 protein binding, 0008233 peptidase activity, 0016021 integral to membrane. Probab=49.43 E-value=20 Score=16.38 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=48.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 80 EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI 141 (176) Q Consensus 80 e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~ 141 (176) +..-.-.+.|.+++-...|..+.+..++.+.+++.|..+++++|+++-...|.++-.+..++ T Consensus 237 esi~nRm~~ER~~iA~~~RS~G~~~aee~~~~~~~Ev~~iLseA~~~A~~ikgEgDA~AAK~ 298 (345) T TIGR01932 237 ESIYNRMRSEREQIARKHRSQGEEKAEELRGKADYEVLKILSEAKRTARIIKGEGDAEAAKI 298 (345) T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999899999999998443666889999852527788788998873534312576999999 No 167 >TIGR00659 TIGR00659 conserved hypothetical protein TIGR00659; InterPro: IPR005261 Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. . Probab=49.36 E-value=12 Score=17.70 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=32.0 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5645334689988598876889999999999999999999554089999999999 Q gi|254781086|r 3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNL 57 (176) Q Consensus 3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~ 57 (176) +...|+.=||||++- =.|+||..++...+-|-+.+.|.=|++. T Consensus 133 Am~vS~~iGGiPavt------------AV~Vil~gllG~vfG~~lL~~~~v~~~~ 175 (227) T TIGR00659 133 AMEVSEKIGGIPAVT------------AVLVILTGLLGAVFGPLLLKLFRVKDKV 175 (227) T ss_pred HHHHHHHCCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 997502038803699------------9999999988887999999972640377 No 168 >PRK12704 phosphodiesterase; Provisional Probab=49.31 E-value=20 Score=16.37 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999 Q gi|254781086|r 86 ARAHAKEIIDKVVAAAEQN 104 (176) Q Consensus 86 ak~ea~~ii~~a~~~a~~~ 104 (176) -+.+..+++.+...+.++. T Consensus 64 ~~~el~~~~~~~~~~LE~i 82 (455) T PRK12704 64 KESELEELIAEQLQELERI 82 (455) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999998 No 169 >PRK09731 putative general secretion pathway protein YghD; Provisional Probab=48.47 E-value=21 Score=16.29 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=37.7 Q ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8876889999-----------9999999999999995540899999999999999999999999999999 Q gi|254781086|r 18 TSTFLSQFFW-----------LAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMI 76 (176) Q Consensus 18 ~~~f~~q~fw-----------~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~ 76 (176) .++|+.|. | .....++++.+++..+|.|+..-.+.-...|+.....-.=.+++|..+. T Consensus 21 ~~~~~~q~-w~grspREqrLv~~~gavLll~i~YwgiWqP~~~R~e~aq~~iq~e~qlL~wvk~~A~~I~ 89 (178) T PRK09731 21 GEHWLAQH-LAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETMLQQLVAMNTRLKSAAPDII 89 (178) T ss_pred HHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 15699998-6689889999999879999999999998836989999999999999999999998878999 No 170 >KOG4503 consensus Probab=48.03 E-value=21 Score=16.24 Aligned_cols=47 Identities=28% Similarity=0.451 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH Q ss_conf 8876889999999999999999999554---08999999999999999999 Q gi|254781086|r 18 TSTFLSQFFWLAIIFGIFYWVTHRFILP---RLSSIMEVRRNLISSDQEKM 65 (176) Q Consensus 18 ~~~f~~q~fw~~I~F~il~~il~~~~~~---pi~~~l~~R~~~I~~~l~~A 65 (176) ..-|+ |+|.-.|.-+++++++-+|++. -+..-++.|+..++..+.++ T Consensus 82 l~gYL-QLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~c 131 (230) T KOG4503 82 LIGYL-QLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAEC 131 (230) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999-999999999999999999999988777788999999999999999 No 171 >COG5085 Predicted membrane protein [Function unknown] Probab=48.03 E-value=21 Score=16.24 Aligned_cols=47 Identities=28% Similarity=0.451 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH Q ss_conf 8876889999999999999999999554---08999999999999999999 Q gi|254781086|r 18 TSTFLSQFFWLAIIFGIFYWVTHRFILP---RLSSIMEVRRNLISSDQEKM 65 (176) Q Consensus 18 ~~~f~~q~fw~~I~F~il~~il~~~~~~---pi~~~l~~R~~~I~~~l~~A 65 (176) ..-|+ |+|.-.|.-+++++++-+|++. -+..-++.|+..++..+.++ T Consensus 82 l~gYL-QLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~c 131 (230) T COG5085 82 LIGYL-QLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAEC 131 (230) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999-999999999999999999999988777788999999999999999 No 172 >CHL00094 dnaK heat shock protein 70 Probab=47.75 E-value=21 Score=16.22 Aligned_cols=93 Identities=10% Similarity=0.082 Sum_probs=53.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999999----9 Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD----M 130 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~----~ 130 (176) .+.|...+++|++..++ .+..+.+.+++.++..++-..+.......+..-.+-+..++..+.+.+.-+.. . T Consensus 504 ~~ei~~~~~ea~~~~~~-----D~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~ek~~i~~~l~~~~~~l~~~~~~~ 578 (622) T CHL00094 504 EDEVERMVKEAEKNAAE-----DKEKRENIDLKNQAESLCYQSEKQLKEFEDKIDEEKKQKIENLIEKLREALSKDNYEE 578 (622) T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH T ss_conf 99999999999988998-----9999998998889999999999999973550999999999999999999875489999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254781086|r 131 QKKASQEVYSIVGEVTKDLVRK 152 (176) Q Consensus 131 k~~a~~ei~~~a~~~a~~i~~k 152 (176) -+....++.+....+...+... T Consensus 579 ~~~~~~~l~~~~~~~~~~~y~~ 600 (622) T CHL00094 579 IKELSEELQTALMEIGKQVYSK 600 (622) T ss_pred HHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999860 No 173 >pfam01442 Apolipoprotein Apolipoprotein A1/A4/E domain. These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I, Apolipoprotein A-IV, and Apolipoprotein E. Probab=47.26 E-value=21 Score=16.17 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 40899999999999999999999-99999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 45 PRLSSIMEVRRNLISSDQEKMDS-AKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNA 123 (176) Q Consensus 45 ~pi~~~l~~R~~~I~~~l~~A~~-~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a 123 (176) ..+.+-.+.=+..+..++++.+. +..-.+......+..+.+.+....-..++-+.......++.+..+..-++...... T Consensus 30 ~~l~~~~~~lr~~l~~dleelr~~l~p~~~el~~~~~~~~eelr~~l~p~~~el~~~~~~~~eeLr~~l~~~~eelr~~~ 109 (191) T pfam01442 30 AQLSKETEALREELQKDLEEVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRERLNRDAEELRRKLAPYAEELRDRL 109 (191) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88889999999999858999999878999999999998999999987778999999888659999999999999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254781086|r 124 QNE 126 (176) Q Consensus 124 ~~~ 126 (176) ... T Consensus 110 ~~~ 112 (191) T pfam01442 110 RQN 112 (191) T ss_pred HHH T ss_conf 977 No 174 >COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning] Probab=46.33 E-value=22 Score=16.08 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9887688999999999999999999955 Q gi|254781086|r 17 DTSTFLSQFFWLAIIFGIFYWVTHRFIL 44 (176) Q Consensus 17 d~~~f~~q~fw~~I~F~il~~il~~~~~ 44 (176) ...++..|++|.++.++++++++.++=+ T Consensus 46 ~~~~~~rq~~~~~lg~~~~~~~~~~~~~ 73 (381) T COG0772 46 PFYFLIRQLVWLLLGLILALLVILRLPL 73 (381) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 1689999999999999999999986759 No 175 >pfam07431 DUF1512 Protein of unknown function (DUF1512). This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown. Probab=45.90 E-value=22 Score=16.04 Aligned_cols=50 Identities=6% Similarity=0.082 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999995540899999999999999999999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEES 82 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~ 82 (176) +.|.++.|++ +|++ ++|.-+.- ...|.+.+..-++..+++.+...+|-+. T Consensus 7 II~~l~~~if-I~l~-----QriQl~~~--~~~Ie~~l~~Le~~~~~s~k~~~~~lkk 56 (356) T pfam07431 7 ILSMLLFFLL-IILL-----QRIQVYRL--FRDIEGALSELEKFLNDAKKKVVELLKK 56 (356) T ss_pred HHHHHHHHHH-HHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999-9999-----99999999--9999999999999988899999999851 No 176 >pfam03245 Phage_lysis Bacteriophage lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. Probab=45.05 E-value=23 Score=15.96 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=8.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254781086|r 74 SMISSYEESLAIARAHAKEIID 95 (176) Q Consensus 74 ~~~~~~e~~l~eak~ea~~ii~ 95 (176) .+-.+|.+.|.+|+.+...+.. T Consensus 61 ~LD~k~tkEL~~Ak~e~d~Lr~ 82 (151) T pfam03245 61 ALDAKHTKELADAKAENDRLRA 82 (151) T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9978999999988977999999 No 177 >pfam02472 ExbD Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins. Probab=44.55 E-value=20 Score=16.29 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=18.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 68998859887688999999999999 Q gi|254781086|r 10 SSRFPPFDTSTFLSQFFWLAIIFGIF 35 (176) Q Consensus 10 ~~gmpqld~~~f~~q~fw~~I~F~il 35 (176) ....|++|.+-+++-+|-++|+|++. T Consensus 2 ~~~~~~initPliDv~flLLiFFmvt 27 (128) T pfam02472 2 KEEEPEINLTPLIDVVFLLLIFFMVT 27 (128) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 86566646532899999999999860 No 178 >PRK10633 hypothetical protein; Provisional Probab=44.44 E-value=24 Score=15.90 Aligned_cols=38 Identities=16% Similarity=0.482 Sum_probs=21.7 Q ss_pred CCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 34689988598876-88999999999999999999955408 Q gi|254781086|r 8 DFSSRFPPFDTSTF-LSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 8 ~~~~gmpqld~~~f-~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) ....|.-+| |..| .|=+ -+-+.|+++.+++.|++++-| T Consensus 34 ~~~~~~~Gl-P~WF~~SCi-~~p~lf~~l~~~mVk~~Fkdi 72 (80) T PRK10633 34 GVAPGFTGL-PRWFEMACL-LTPLLFILLCWAMVKFIFRDI 72 (80) T ss_pred CCCCCCCCC-HHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC T ss_conf 886555677-099999999-999999999999999986079 No 179 >pfam07798 DUF1640 Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured. Probab=44.13 E-value=24 Score=15.87 Aligned_cols=60 Identities=7% Similarity=0.075 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 80 EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY 139 (176) Q Consensus 80 e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~ 139 (176) ...+..++......+..........++....+++.++.+.....+-.+..+|.....+.. T Consensus 64 r~el~~~~~~e~~~lr~e~e~L~~dve~L~~~L~~ei~k~~a~~klDlNleK~riree~~ 123 (177) T pfam07798 64 KSELQSLEKSEFSNLQAENEKLKNDLEKLKNRLRDEIDKVTAGVRLDLNLEKGRIREELA 123 (177) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998777589999999999999999999999999998615257654555207789998 No 180 >KOG3970 consensus Probab=43.80 E-value=24 Score=15.84 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=13.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4689988598876889999999999999999999 Q gi|254781086|r 9 FSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRF 42 (176) Q Consensus 9 ~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~ 42 (176) +++|-||- .-+.-|++|..++|-|+..-+ T Consensus 241 g~s~rP~~-----~~~ra~fli~lgvLafi~~i~ 269 (299) T KOG3970 241 GGSGRPQE-----AKKRALFLIFLGVLAFITIIM 269 (299) T ss_pred CCCCCCHH-----HHHHHHHHHHHHHHHHHHHHH T ss_conf 77889889-----999999999999999999999 No 181 >pfam02936 COX4 Cytochrome c oxidase subunit IV. Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The uncharacterized yeast protein YGL226W appears to be the yeast COX IV subunit. Probab=43.64 E-value=18 Score=16.60 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999955408999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) -+|+++..-+.++++++.|++||+-..|++ T Consensus 80 ~~~~~i~~s~~~~~~~r~~~~pp~P~T~~~ 109 (143) T pfam02936 80 GVLAGLGISFGLFILMRTFAYPPLPKTMNK 109 (143) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 999999999999999999647999988699 No 182 >pfam03938 OmpH Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Probab=43.47 E-value=25 Score=15.81 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999 Q gi|254781086|r 108 QREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK 152 (176) Q Consensus 108 ~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k 152 (176) .......++.......+.++...+......+...+......+++. T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~i~~~i~~ia~~ 127 (157) T pfam03938 83 ELQQKQQELQQKQQAAQQELQQKQQELLQPIYDKIDKAIKEVAKE 127 (157) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999999998 No 183 >COG3924 Predicted membrane protein [Function unknown] Probab=43.43 E-value=25 Score=15.81 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=30.0 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 64533468998859887688999999999999999999955408 Q gi|254781086|r 4 SSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 4 ~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) ++-.....||.+| |-.|.---+-+-+.|+++-+.+.||++.-| T Consensus 30 AYlp~~t~G~~gf-P~WFE~aCi~lPllFi~l~~~mvkfif~DI 72 (80) T COG3924 30 AYLPGNTPGFTGF-PLWFEMACILLPLLFIVLCWAMVKFIFRDI 72 (80) T ss_pred HCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 7078888887777-199999999999999999999999954378 No 184 >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Probab=43.36 E-value=25 Score=15.80 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=44.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5408999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 44 LPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAA 101 (176) Q Consensus 44 ~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a 101 (176) .++-....++|.+.|+.++..-++..........+.+..|.+.+.+...+..+-.... T Consensus 29 ~s~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420) T COG4942 29 AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5766786788899899999999999999999999999999999988999999999988 No 185 >pfam11027 DUF2615 Protein of unknown function (DUF2615). This small. approximately 100 residue, family is conserved from worms to humans. It is cysteine-rich with a characteristic FDxCEC sequence motif. The function is not known. Probab=43.05 E-value=25 Score=15.77 Aligned_cols=16 Identities=19% Similarity=0.621 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 8768899999999999 Q gi|254781086|r 19 STFLSQFFWLAIIFGI 34 (176) Q Consensus 19 ~~f~~q~fw~~I~F~i 34 (176) ++|.--+.|+++.+++ T Consensus 54 ~~~~i~m~w~~~a~~l 69 (103) T pfam11027 54 SGFMLMMAWMLLAMAL 69 (103) T ss_pred CHHHHHHHHHHHHHHH T ss_conf 0899999999999999 No 186 >PRK13955 mscL large-conductance mechanosensitive channel; Provisional Probab=42.90 E-value=25 Score=15.75 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999999999554089999999 Q gi|254781086|r 22 LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR 54 (176) Q Consensus 22 ~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R 54 (176) .+.+..-+|+|+|.-+++ +++.+++.+....| T Consensus 66 ~G~fl~avI~FlIiA~vv-Fl~Vk~~nk~~~~~ 97 (130) T PRK13955 66 YGNFIQTIFDFLIIAASI-FMFVKVFNKLTSKK 97 (130) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH T ss_conf 999999999999999999-99999999998865 No 187 >COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion] Probab=42.47 E-value=25 Score=15.71 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=15.2 Q ss_pred CCCCCHHHHHHHHHHHHHH Q ss_conf 9885988768899999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAII 31 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~ 31 (176) ||-+.+-|-++|.+|+.-. T Consensus 1 ~p~~~~p~~la~m~w~~ai 19 (275) T COG3031 1 MPTLRFPFHLANMYWVYAI 19 (275) T ss_pred CCCCCCHHHHHHHHHHHHH T ss_conf 9743004888878899999 No 188 >TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III; InterPro: IPR004678 This family describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase 1.9.3.1 from EC.; GO: 0004129 cytochrome-c oxidase activity, 0006118 electron transport. Probab=42.05 E-value=26 Score=15.67 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=37.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 887688999999999999999999955408999----9-999999999999999999999999999 Q gi|254781086|r 18 TSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI----M-EVRRNLISSDQEKMDSAKREVESMISS 78 (176) Q Consensus 18 ~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~----l-~~R~~~I~~~l~~A~~~~~eae~~~~~ 78 (176) |-.|+- .|-..|.|.+.|+++.|.++|=+.++ | -..+..+.+++....+......+.+.+ T Consensus 27 PrWWlW-~F~aTIvWg~~Y~F~aYPa~plv~~yT~G~L~~~~r~~v~~ei~~~~~~~~a~~~KL~~ 91 (303) T TIGR00782 27 PRWWLW-TFYATIVWGVGYLFVAYPAWPLVSGYTKGLLGWSSRSQVEEEIKKFNEKNAALEAKLAQ 91 (303) T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 557999-99999999999999871333333332455213440577999999999885479987457 No 189 >TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'; InterPro: IPR012758 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0008270 zinc ion binding, 0006350 transcription. Probab=41.87 E-value=26 Score=15.66 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999-------------9999999999999999999999999 Q gi|254781086|r 99 AAAEQNLEFQREVFEKDLLHKLSNA-------------QNEIDDMQKKASQEVYSIVGEVTKD 148 (176) Q Consensus 99 ~~a~~~~e~~~~~a~~ei~~~~~~a-------------~~~I~~~k~~a~~ei~~~a~~~a~~ 148 (176) .+|.+.+++.+.+|+++++.++++. ++.++..--+.+.++++.+.+++.+ T Consensus 683 ~eA~~~I~~~i~~A~~~V~~LIe~Y~~GeLeplPGRt~EEtlE~~I~~~L~~~Rd~~G~va~k 745 (901) T TIGR02390 683 KEAKEEIEELIEKAEKRVDKLIEEYRNGELEPLPGRTVEETLEMKILEVLGKARDEAGEVAEK 745 (901) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 789999999999999999999998527823018778644655889999987776665112010 No 190 >pfam05137 PilN Fimbrial assembly protein (PilN). Probab=41.02 E-value=27 Score=15.57 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=3.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999995 Q gi|254781086|r 32 FGIFYWVTHRFI 43 (176) Q Consensus 32 F~il~~il~~~~ 43 (176) +++++.+...++ T Consensus 28 ~~~~~~~~~~~~ 39 (162) T pfam05137 28 AGVLLAFAGWLY 39 (162) T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 191 >cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la Probab=40.53 E-value=27 Score=15.53 Aligned_cols=29 Identities=10% Similarity=-0.079 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999 Q gi|254781086|r 99 AAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 99 ~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) .+++...+..+.+++.+.++.+.+|+.+- T Consensus 197 ~~ae~~a~~~~~~A~~ea~~~~~~Aea~~ 225 (266) T cd03404 197 NEAEAYANEVVPKARGEAARIIQEAEAYK 225 (266) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998889999999999999 No 192 >pfam05992 SbmA_BacA SbmA/BacA-like family. The Rhizobium meliloti bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homolog of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family. Probab=40.36 E-value=27 Score=15.51 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=35.0 Q ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 689988--598876889999999999999999999554089999999999999999 Q gi|254781086|r 10 SSRFPP--FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQE 63 (176) Q Consensus 10 ~~gmpq--ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~ 63 (176) ||++|- +.+ ..|.-++|.++.+.++-.++..++..|+.+ ++-++++.+.+.. T Consensus 148 S~~~~~~~~~g-~ipg~Lv~~a~iya~~gt~i~~~iGr~L~~-Ln~~~q~~EAdfR 201 (315) T pfam05992 148 SKHVPVLPIFG-DIPHGLVWAALVWSLGGTVFLMVVGIKLPG-LEFNNQKVEAAYR 201 (315) T ss_pred CCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHH T ss_conf 58886463157-775079999999999999999997145666-8888888767899 No 193 >TIGR02210 rodA_shape rod shape-determining protein RodA; InterPro: IPR011923 This protein is a member of the FtsW/RodA/SpoVE family. It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologues from a number of both rod-shaped and coccoid bacteria (including four proteins in Bacillus anthracis) are not found in this family.; GO: 0008360 regulation of cell shape, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=40.27 E-value=27 Score=15.50 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8876889999999999999999 Q gi|254781086|r 18 TSTFLSQFFWLAIIFGIFYWVT 39 (176) Q Consensus 18 ~~~f~~q~fw~~I~F~il~~il 39 (176) +..+..|++|++|.|++++.+. T Consensus 32 ~~~~~kQ~~~~~~G~~~~~~~~ 53 (416) T TIGR02210 32 SSLAIKQLVWFIIGLVLMIIVS 53 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999998 No 194 >TIGR00867 deg-1 degenerin; InterPro: IPR004726 The Caenorhabditis elegans mec-4 gene encodes a subunit of a candidate mechano-sensitive ion channel that plays a critical role in touch reception . The product is a mechano-sensory protein (degenerin). At least some of the proteins in this group form part of a mechano-transducing complex for touch sensitivity. Others include the acid-sensing ion channels, ASIC1-3 that are homo- or hetero-oligomeric neuronal H+-gated channels that mediate pain sensation in response to tissue acidosis. Mammalian ENaC (IPR004724 from INTERPRO) is important for the maintenance of Na+ balance and the regulation of blood pressure. Three homologous ENaC subunits, a, b and g, have been shown to assemble to form the highly Na+-selective channel. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0016021 integral to membrane. Probab=40.26 E-value=27 Score=15.50 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=26.8 Q ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899885-9887688999999999999999999955408999999 Q gi|254781086|r 11 SRFPPF-DTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 11 ~gmpql-d~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) -|-|-. ..+.+..-+||++|+|+.|..++.-+++= |.++... T Consensus 9 HGip~~~~a~N~~~R~~W~~~fl~cl~~f~~q~~~~-i~Ky~~~ 51 (757) T TIGR00867 9 HGIPMVATASNGFSRYVWVLLFLFCLLMFLYQAYLL-ISKYNRY 51 (757) T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCC T ss_conf 003602462516889999999999999999999999-9997158 No 195 >PRK13411 molecular chaperone DnaK; Provisional Probab=39.38 E-value=28 Score=15.42 Aligned_cols=93 Identities=11% Similarity=0.166 Sum_probs=49.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999999----- Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD----- 129 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~----- 129 (176) .+.|...+.+|++..++ .+....+.++|.++..++-..+...+...+..-..-+..++..+.+.+.-+.. T Consensus 504 ~~ei~~m~~~a~~~~~~-----D~~~~e~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~~i~~~~~~~~~~l~~~~~~~ 578 (655) T PRK13411 504 SSEIERMRQEAEKYAEE-----DRRRKQLVELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLAAALTDPNISL 578 (655) T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99999999999975987-----8999999998989999999999998850340999999999999999999976899388 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -99999999999999999999999 Q gi|254781086|r 130 -MQKKASQEVYSIVGEVTKDLVRK 152 (176) Q Consensus 130 -~k~~a~~ei~~~a~~~a~~i~~k 152 (176) +-+....++.+.+..+..++... T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~y~~ 602 (655) T PRK13411 579 EELRQQLEEFRQVLLAIGAEVYQQ 602 (655) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999986 No 196 >TIGR02978 phageshock_pspC phage shock protein C; InterPro: IPR014320 All members of this protein are the phage shock protein PspC. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor; PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin over expression, ethanol, heat shock and protein export defects.. Probab=39.17 E-value=29 Score=15.40 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=18.9 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999-99999999999999999999999 Q gi|254781086|r 55 RNLISSDQEK-MDSAKREVESMISSYEESLAIAR 87 (176) Q Consensus 55 ~~~I~~~l~~-A~~~~~eae~~~~~~e~~l~eak 87 (176) +.+.=+.-.. ++.+-.+.+......|.+|.+.+ T Consensus 78 k~k~Wq~g~~~p~~~L~~~~~~~~~~e~RLr~mE 111 (128) T TIGR02978 78 KSKFWQAGQTSPKQALREVKRELRRLERRLRNME 111 (128) T ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 5410022057888999999999999888989768 No 197 >pfam01741 MscL Large-conductance mechanosensitive channel, MscL. Probab=39.05 E-value=29 Score=15.38 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999999999955408999 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSSI 50 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~~ 50 (176) +.+..-+|+|+|.-+++ +++.+|+.+. T Consensus 71 G~fl~avI~FlIia~vv-Fl~Vk~~nk~ 97 (127) T pfam01741 71 GLFIQAVINFLIIAFAI-FLVIKAINKL 97 (127) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH T ss_conf 99999999999999999-9999999998 No 198 >pfam04387 PTPLA Protein tyrosine phosphatase-like protein, PTPLA. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types. Probab=38.52 E-value=29 Score=15.33 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=24.0 Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 468998-859887688999999999999999999955408999999999999 Q gi|254781086|r 9 FSSRFP-PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLIS 59 (176) Q Consensus 9 ~~~gmp-qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~ 59 (176) .+-.|| .+|.++.. .|+++.++++|+....+.+ ..++.+|++... T Consensus 113 ~s~~~Pn~~n~~~~~---~~~l~~~l~~yipg~~~ly---~hM~~QRkK~l~ 158 (161) T pfam04387 113 YSLEMPNALNFSFSY---YYFLIFVLLLYIPGFPFLY---SHMLKQRRKVLG 158 (161) T ss_pred CCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC T ss_conf 563578632535159---9999999999997599999---999999999737 No 199 >pfam06459 RR_TM4-6 Ryanodine Receptor TM 4-6. This region covers TM regions 4-6 of the ryanodine receptor 1 family. Probab=38.07 E-value=30 Score=15.29 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 88999999999999999 Q gi|254781086|r 22 LSQFFWLAIIFGIFYWV 38 (176) Q Consensus 22 ~~q~fw~~I~F~il~~i 38 (176) +..+.-++|||++||+= T Consensus 130 lAL~lAF~INFiLLFyK 146 (217) T pfam06459 130 LALFLAFAINFILLFYK 146 (217) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999863 No 200 >TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; InterPro: IPR011920 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. This entry represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of Escherichia coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis .; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=38.06 E-value=30 Score=15.29 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=38.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH Q ss_conf 5988768899999999999999-99999554--------0899-9999999999999999--9999999999999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYW-VTHRFILP--------RLSS-IMEVRRNLISSDQEKM--DSAKREVESMISS 78 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~-il~~~~~~--------pi~~-~l~~R~~~I~~~l~~A--~~~~~eae~~~~~ 78 (176) |.|-||+ +|+-|..+.+.. +|-+.+.- =... ++..|...+..+|+-+ +...++-+.++.+ T Consensus 8 L~Pr~W~---~WLG~g~l~l~vN~LPy~vl~~LG~g~G~l~~~t~~~~R~~ia~rNL~LCFP~~~~~er~~ll~~ 79 (308) T TIGR02207 8 LHPRYWP---TWLGLGVLWLIVNQLPYPVLLALGRGLGRLAMRTLMKRRAKIARRNLELCFPHMSDAERERLLKE 79 (308) T ss_pred CCCCCHH---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 6885058---99999999999974408999997155899999988874699999837644877798999999998 No 201 >COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion] Probab=37.65 E-value=30 Score=15.25 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=22.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 988768899999999999999999995540 Q gi|254781086|r 17 DTSTFLSQFFWLAIIFGIFYWVTHRFILPR 46 (176) Q Consensus 17 d~~~f~~q~fw~~I~F~il~~il~~~~~~p 46 (176) +.++|+...+|+++.+++..++..++.+.. T Consensus 208 ~~s~~l~~~~~l~l~~~~~~~~~~~~~~~~ 237 (397) T COG1459 208 ALSDFLREWGWLLLLIIIIIAIGYLLLLRK 237 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999987999999999999999999805 No 202 >pfam03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region. The family corresponds the N-terminal cytoplasmic domain. Probab=37.63 E-value=30 Score=15.25 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=15.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~ 41 (176) .+|.....--+|| |+|.+|++.|.+ T Consensus 8 ~~DvAql~ly~Fw--iFFagLv~YL~r 32 (135) T pfam03967 8 YFDVAQLALYAFW--IFFAGLVYYLRR 32 (135) T ss_pred CCCHHHHHHHHHH--HHHHHHHHHHHH T ss_conf 3409999999999--999999998610 No 203 >KOG2180 consensus Probab=37.36 E-value=31 Score=15.22 Aligned_cols=89 Identities=8% Similarity=0.081 Sum_probs=45.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 885988768899999999999999999995540899999999999999999----9999999999999999999999999 Q gi|254781086|r 14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEK----MDSAKREVESMISSYEESLAIARAH 89 (176) Q Consensus 14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~----A~~~~~eae~~~~~~e~~l~eak~e 89 (176) |+||+..|+.++|---.+..-+= ++..-|..+...+..+|.. -+....+..+.+.+.+..+.+.-.+ T Consensus 17 ~~f~~v~~in~lfp~eqSL~~id---------~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~ 87 (793) T KOG2180 17 PEFNFVEYINELFPAEQSLTNID---------SLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQK 87 (793) T ss_pred CCHHHHHHHHHHCCCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 52238999987441153453379---------999999999999999999998732341200255478899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781086|r 90 AKEIIDKVVAAAEQNLEFQREVF 112 (176) Q Consensus 90 a~~ii~~a~~~a~~~~e~~~~~a 112 (176) ..++...| +..+.++.++...+ T Consensus 88 i~eiks~a-e~Te~~V~eiTrdI 109 (793) T KOG2180 88 IQEIKSVA-ESTEAMVQEITRDI 109 (793) T ss_pred HHHHHHHH-HHHHHHHHHHHHHH T ss_conf 89998888-74899999998787 No 204 >PRK06602 NADH dehydrogenase subunit A; Validated Probab=37.04 E-value=31 Score=15.19 Aligned_cols=31 Identities=35% Similarity=0.664 Sum_probs=20.8 Q ss_pred CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 453346899885988--7688999999999999 Q gi|254781086|r 5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF 35 (176) Q Consensus 5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il 35 (176) ..+..+.|+++.+.. -|.-+.|..++.|++| T Consensus 41 K~spyECG~~p~~~~r~~Fsi~fylvailFliF 73 (121) T PRK06602 41 KLSPYESGFEAFGDARMKFDVRFYLVAILFVIF 73 (121) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 588737797998887766566989999999999 No 205 >PRK10774 cell division protein FtsW; Provisional Probab=36.86 E-value=31 Score=15.17 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=17.4 Q ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 859887-6889999999999999999 Q gi|254781086|r 15 PFDTST-FLSQFFWLAIIFGIFYWVT 39 (176) Q Consensus 15 qld~~~-f~~q~fw~~I~F~il~~il 39 (176) .-||.+ +.-|++|.++.+++++++. T Consensus 66 ~~~p~~f~~RQli~~~iGl~~~~~~~ 91 (405) T PRK10774 66 ANDPFLFAKRDALYLILAFILALITL 91 (405) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79918999999999999999999999 No 206 >TIGR01400 fliR flagellar biosynthetic protein FliR; InterPro: IPR006303 These sequences represent the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT.; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum. Probab=35.91 E-value=32 Score=15.08 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=24.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 988598876889999999999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRF 42 (176) Q Consensus 13 mpqld~~~f~~q~fw~~I~F~il~~il~~~ 42 (176) +||+|- |+++.=+-+++.|+++++.+..+ T Consensus 201 ~PQ~N~-F~iG~Pl~~~~Gl~ll~~~~p~~ 229 (248) T TIGR01400 201 APQLNI-FSIGFPLKILLGLILLYLILPVI 229 (248) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 579999-99985599999999999999999 No 207 >pfam07850 Renin_r Renin receptor-like protein. The sequences featured in this family are similar to a region of the human renin receptor that bears a putative transmembrane spanning segment. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface. Probab=35.82 E-value=32 Score=15.07 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=21.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 598876889999999999999999999554 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~ 45 (176) .|....++-++|+.|.|++-++.+.+.+|. T Consensus 49 ~dYpviFnIiLW~~v~l~l~v~~i~~~i~~ 78 (98) T pfam07850 49 FDYPVIFNIILWLMVILVLAVIAISYNLWN 78 (98) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEE T ss_conf 873799999999999999999998761464 No 208 >pfam03606 DcuC C4-dicarboxylate anaerobic carrier. Probab=35.62 E-value=33 Score=15.05 Aligned_cols=45 Identities=9% Similarity=0.015 Sum_probs=22.9 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 346899885988768899999999999999999995540899999999999 Q gi|254781086|r 8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLI 58 (176) Q Consensus 8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I 58 (176) ..-.|+|-++. ++.-++.|.+...+...++++| ..++.++++... T Consensus 182 q~iaglp~~sg-~~~r~i~~~v~~~~~i~~~~~y-----a~kv~~~p~~s~ 226 (456) T pfam03606 182 AQIAGLPIADG-FGFRLLPWVILTIISIAYLHFY-----AQKIKDDPVYSE 226 (456) T ss_pred HHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCHHH T ss_conf 98739977768-9999999999999999999999-----999970831123 No 209 >TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; InterPro: IPR011921 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. This family consists of MsbB in Escherichia coli and closely related proteins in other species. MsbB is homologous to HtrB (IPR011920 from INTERPRO) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=35.38 E-value=16 Score=17.01 Aligned_cols=35 Identities=6% Similarity=0.157 Sum_probs=24.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 59887688999999999999999999955408999999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) |-|.||+ .|+.|.+++++.++---+-.||.+.|-. T Consensus 10 l~PkYW~---~WLGv~~l~~lA~~P~klRDk~~~~La~ 44 (307) T TIGR02208 10 LHPKYWG---VWLGVFALVLLAFMPVKLRDKIAKKLAK 44 (307) T ss_pred CCCCCCH---HHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 3887304---7899999999970798767568999888 No 210 >PRK06771 hypothetical protein; Provisional Probab=35.25 E-value=33 Score=15.01 Aligned_cols=12 Identities=42% Similarity=1.018 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254781086|r 26 FWLAIIFGIFYW 37 (176) Q Consensus 26 fw~~I~F~il~~ 37 (176) ||.+|-+++|-+ T Consensus 3 ~wiiipi~~Fg~ 14 (93) T PRK06771 3 FWMIIPIAIFGF 14 (93) T ss_pred EEEEEHHHHHHH T ss_conf 353409999899 No 211 >PRK10930 FtsH protease regulator HflK; Provisional Probab=35.24 E-value=33 Score=15.01 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999 Q gi|254781086|r 65 MDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEF 107 (176) Q Consensus 65 A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~ 107 (176) ...+-+++..+.++-+..+.+|++-+++++-+|+-+|.+++++ T Consensus 247 V~~AF~DV~~ArqD~er~ineA~aYaN~iiP~ArG~A~rii~e 289 (419) T PRK10930 247 VKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEE 289 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 9999999999998899999999999975351321389999999 No 212 >PRK06397 V-type ATP synthase subunit H; Validated Probab=35.23 E-value=33 Score=15.01 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999 Q gi|254781086|r 74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKD 115 (176) Q Consensus 74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~e 115 (176) .+..+.++.+.+++.+...-......+..........+++++ T Consensus 28 ~lk~eqe~~ikea~~k~~ekakk~eee~~n~Yn~al~e~rk~ 69 (111) T PRK06397 28 NIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKE 69 (111) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999989999999999989999866899999999999999988 No 213 >TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842 This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebsiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in Escherichia coli. Based on this latter finding, it is suggested that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme .; GO: 0006810 transport, 0018189 pyrroloquinoline quinone biosynthetic process. Probab=34.98 E-value=17 Score=16.80 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=17.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 53346899885988768899999 Q gi|254781086|r 6 SSDFSSRFPPFDTSTFLSQFFWL 28 (176) Q Consensus 6 ~~~~~~gmpqld~~~f~~q~fw~ 28 (176) .|+.+||+||=|-..-..+..|- T Consensus 6 GSAAGGGfPQWNC~C~~C~~aR~ 28 (314) T TIGR02108 6 GSAAGGGFPQWNCNCPNCRGARA 28 (314) T ss_pred EECCCCCCCCCCCCCHHHHHHHH T ss_conf 52267887752568703468773 No 214 >KOG4812 consensus Probab=34.69 E-value=34 Score=14.96 Aligned_cols=25 Identities=8% Similarity=0.533 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999995540899 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSS 49 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~ 49 (176) +-|+++.|+.|+++...+-|-+|++ T Consensus 225 Lwwi~~vlG~ll~lr~~i~YikVrr 249 (262) T KOG4812 225 LWWIFLVLGLLLFLRGFINYIKVRR 249 (262) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999876888755 No 215 >TIGR01401 fliR_like_III type III secretion apparatus protein SpaR/YscT/HrcT; InterPro: IPR006304 These sequences represent members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (IPR006303 from INTERPRO).; GO: 0006810 transport, 0016021 integral to membrane. Probab=34.59 E-value=34 Score=14.95 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=21.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 885988768899999999999999999995540 Q gi|254781086|r 14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPR 46 (176) Q Consensus 14 pqld~~~f~~q~fw~~I~F~il~~il~~~~~~p 46 (176) ||||. |++|+-.=.++.|++++.....++-.. T Consensus 215 pQLNv-F~LslpiKS~~a~~~Llly~~~l~~~~ 246 (262) T TIGR01401 215 PQLNV-FILSLPIKSLLALLILLLYFATLLEEA 246 (262) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 25337-778678999999999999999999999 No 216 >pfam06196 DUF997 Protein of unknown function (DUF997). Family of predicted bacterial membrane protein with unknown function. Probab=34.42 E-value=34 Score=14.93 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=20.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999955408 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) +| |..|.---+.+-+.|.++.+++-|++++-| T Consensus 36 Gl-P~WF~~SCi~~p~lf~~l~~~mVk~~Fkdi 67 (75) T pfam06196 36 GF-PLWFEYSCIVGPILFIVLCWLMVKFFFKDI 67 (75) T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 88-399999999999999999999999987079 No 217 >pfam08269 Cache_2 Cache domain. Probab=33.91 E-value=35 Score=14.88 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781086|r 49 SIMEVRRNLISSDQEKMDSAKRE 71 (176) Q Consensus 49 ~~l~~R~~~I~~~l~~A~~~~~e 71 (176) .++++|+..++.-++.|...-+. T Consensus 3 ~l~~~rk~~lk~~v~~a~s~i~~ 25 (95) T pfam08269 3 NLIEERKAELKAVVESALSIIKE 25 (95) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999999999 No 218 >PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional Probab=33.68 E-value=35 Score=14.86 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=36.2 Q ss_pred CCCCCCHHHHHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH Q ss_conf 99885988768899--99999999999999--------99955408999999999999999999--9999999999999 Q gi|254781086|r 12 RFPPFDTSTFLSQF--FWLAIIFGIFYWVT--------HRFILPRLSSIMEVRRNLISSDQEKM--DSAKREVESMISS 78 (176) Q Consensus 12 gmpqld~~~f~~q~--fw~~I~F~il~~il--------~~~~~~pi~~~l~~R~~~I~~~l~~A--~~~~~eae~~~~~ 78 (176) ..|+|+.+|+.+-. -|+.+.|+-++.+| .+++..-+-.+...|+.-+..+|.-| +....+.+.+..+ T Consensus 5 ~~~~f~~~~~~pkyw~~~l~~~~l~lis~LP~~~~~~lg~~lg~lly~~~~~rr~va~~NL~~aFPe~s~~e~~~i~k~ 83 (309) T PRK06860 5 NLPKFSTALLHPKYWLTWLGFGLLWLIVQLPYPVLYKLGRGLGKLALRFMKRRAKIARRNLELCFPEMSEQEREAIVVK 83 (309) T ss_pred CCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 6984637651816899999999999999886999999999999999896413999999999983889999999999999 No 219 >COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones] Probab=33.58 E-value=35 Score=14.85 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=9.9 Q ss_pred CCCCCCHHHHHHHHHHHH Q ss_conf 998859887688999999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLA 29 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~ 29 (176) |||+||.+.|.-.-.|+- T Consensus 87 gkpPL~~~~~~r~p~w~~ 104 (308) T COG3058 87 GKPPLDISVLPREPHWRK 104 (308) T ss_pred CCCCCCHHHCCCCCHHHH T ss_conf 999755765279807999 No 220 >COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning] Probab=33.05 E-value=36 Score=14.79 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=40.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H Q ss_conf 99999999999999999999999-------------9999999999999999999999999999999999---------9 Q gi|254781086|r 48 SSIMEVRRNLISSDQEKMDSAKR-------------EVESMISSYEESLAIARAHAKEIIDKVVAAAEQN---------L 105 (176) Q Consensus 48 ~~~l~~R~~~I~~~l~~A~~~~~-------------eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~---------~ 105 (176) ..=+..|.+.+...+........ .......+....+..+...++.++..+...+... . T Consensus 46 ~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a~~~~e~ 125 (212) T COG3599 46 NEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQRVFGKAQYKADRYLEDAKIAQEL 125 (212) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999987641113688887788789999877768999999999889999876698899888888999989 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999 Q gi|254781086|r 106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYS 140 (176) Q Consensus 106 e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~ 140 (176) +....++...-.+.+...+..++..+.....++-. T Consensus 126 e~~~~q~~~~~~rl~~~~~~ql~~~~~~~~~~~~~ 160 (212) T COG3599 126 EDLKRQAQVERQRLRSDIEAQLASAKQEDWDEILR 160 (212) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH T ss_conf 99999999999999998999999871430799976 No 221 >TIGR02121 Na_Pro_sym sodium/proline symporter; InterPro: IPR011851 This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. ; GO: 0005298 proline:sodium symporter activity, 0031402 sodium ion binding, 0006814 sodium ion transport, 0015824 proline transport, 0016021 integral to membrane. Probab=32.80 E-value=35 Score=14.88 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=36.6 Q ss_pred CCCCCCC----CCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4533468----99885988768899--999999999999999995540899999999999 Q gi|254781086|r 5 SSSDFSS----RFPPFDTSTFLSQF--FWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLI 58 (176) Q Consensus 5 ~~~~~~~----gmpqld~~~f~~q~--fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I 58 (176) .+|.=|| |+|+= .|.+=+ +|.+|-.++=-|+.|+|+=|+++.+=+..+|.| T Consensus 49 GASDMSGWLLmGLPGA---~y~~G~~~~WIAiGL~iGAy~NW~~vApRLR~YTE~~~dsi 105 (517) T TIGR02121 49 GASDMSGWLLMGLPGA---LYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEIAKDSI 105 (517) T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 0464556787311799---99998999999999999999989998678776634641666 No 222 >pfam07464 ApoLp-III Apolipophorin-III precursor (apoLp-III). This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage. Probab=32.38 E-value=37 Score=14.72 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=3.7 Q ss_pred HHHHHHHHHH Q ss_conf 9999999942 Q gi|254781086|r 163 QKILDRKRDG 172 (176) Q Consensus 163 ~~~i~~~~~~ 172 (176) +.+.|++++. T Consensus 142 Kq~yDd~vk~ 151 (166) T pfam07464 142 KQAYDDFVKN 151 (166) T ss_pred HHHHHHHHHH T ss_conf 9999999988 No 223 >pfam02108 FliH Flagellar assembly protein FliH. Probab=31.71 E-value=38 Score=14.66 Aligned_cols=60 Identities=10% Similarity=0.300 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999841599999999999994210 Q gi|254781086|r 114 KDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGID 174 (176) Q Consensus 114 ~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i~~~~~~i~ 174 (176) .............+.....+...++-+.+..++..++.. --..+...+-.+|.+.+..+. T Consensus 5 ~~l~~l~~~l~~~~~~~~~~~e~~l~~La~~ia~kvi~~-el~~~p~~i~~~v~~al~~l~ 64 (128) T pfam02108 5 AQLAALLEELENPLAELDQELEQQLVDLALDIARQVIRR-ELTVDPELILALVREALAALP 64 (128) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHH T ss_conf 999999999998999999999999999999999999999-973498999999999999713 No 224 >pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown. Probab=31.05 E-value=32 Score=15.11 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=23.2 Q ss_pred CCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 468998859887688-9999999999999999999554 Q gi|254781086|r 9 FSSRFPPFDTSTFLS-QFFWLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 9 ~~~gmpqld~~~f~~-q~fw~~I~F~il~~il~~~~~~ 45 (176) ..-|+|=|-..+.-- -++-.++.|++++++++.|+|. T Consensus 73 ~r~GlpF~~~r~~kR~~~~~G~~~f~~~l~~lS~fVW~ 110 (383) T pfam06898 73 ERKGLPFLFFRLRKRRGIVLGILLFVILLYFLSNFIWS 110 (383) T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE T ss_conf 50471789999888799999999999999978406999 No 225 >pfam05814 DUF843 Baculovirus protein of unknown function (DUF843). This family consists of several Baculovirus proteins of around 85 residues long with no known function. Probab=30.76 E-value=39 Score=14.56 Aligned_cols=26 Identities=12% Similarity=0.326 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88999999999999999999955408 Q gi|254781086|r 22 LSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 22 ~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) ...++.+++.|++|+.++..++.+|= T Consensus 24 s~li~~~lllfvlF~~~l~vyyinte 49 (83) T pfam05814 24 SELILTLLVLFVLFFCLLNVYYINTE 49 (83) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 78999999999999998776403897 No 226 >pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function. Probab=30.38 E-value=40 Score=14.52 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999955408999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN 104 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~ 104 (176) ++|++|.++|-+++. |+.-|.+ .++..++.+|+.+ +..+++|+..+.+==....++++.....-.+. T Consensus 3 li~lvvG~iiG~~~~-R~~~~~~-----~~q~~Le~eLe~~-------k~el~~Y~~ev~~HF~~tA~Ll~~l~~~Y~~l 69 (128) T pfam06295 3 IIGLIVGLIIGLIIM-RLTNPTY-----KNQKKIKKELEEA-------KEELDEQRQELKDHFAQSAELLETLGKDYHKL 69 (128) T ss_pred HHHHHHHHHHHHHHH-HHCCCHH-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999999999-9727407-----6899999999999-------99999999999999999999999999999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781086|r 105 LEFQ 108 (176) Q Consensus 105 ~e~~ 108 (176) .+.. T Consensus 70 y~Hl 73 (128) T pfam06295 70 YQHM 73 (128) T ss_pred HHHH T ss_conf 9999 No 227 >KOG3054 consensus Probab=29.82 E-value=41 Score=14.46 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999554 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~ 45 (176) -+||++|.-++|+.++..|+|. T Consensus 3 ~~v~vlVaa~llV~~i~l~l~~ 24 (299) T KOG3054 3 EIVAVLVAAALLVAVILLFLWK 24 (299) T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 3799999999999999999998 No 228 >TIGR00785 dass transporter, divalent anion:Na+ symporter (DASS) family; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter . Mammalian renal sodium/dicarboxylate cotransporter , which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 . Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanococcus jannaschii hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane. Probab=29.35 E-value=41 Score=14.41 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999554089999999999999999999 Q gi|254781086|r 29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMD 66 (176) Q Consensus 29 ~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~ 66 (176) .|..+++.+++-|.+|||-.+--+++...++.++++-. T Consensus 222 ~~~llll~~~llY~~fpP~~~~~~~~~~~ak~el~~mG 259 (473) T TIGR00785 222 GIILLLLVPLLLYVLFPPELKSKDEVDLWAKEELEEMG 259 (473) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 99999999999865267510466438899988652115 No 229 >TIGR02832 spo_yunB sporulation protein YunB; InterPro: IPR014197 This entry represents the sporulation protein YunB. In Bacillus subtilis its expression is controlled by sigmaE.The gene yunB seems to code for a protein involved, at least indirectly, in the pathway leading to the activation of sigmaK. Inactivation of yunB delays sigmaK activation and results in reduced sporulation efficiency .. Probab=29.31 E-value=41 Score=14.40 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8899999999999999999995540899999999999 Q gi|254781086|r 22 LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLI 58 (176) Q Consensus 22 ~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I 58 (176) +.-+..+++.++.++|++.+.+-|.+.++=+.+-.++ T Consensus 8 l~~~il~~~~~~~~~~i~d~~i~P~~~~~ae~e~~~~ 44 (220) T TIGR02832 8 LISLILFILLLLTFLYIVDSLIKPTLLAVAEVEIKRI 44 (220) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6789999999999999986543689999989999999 No 230 >PRK10588 hypothetical protein; Provisional Probab=29.15 E-value=42 Score=14.39 Aligned_cols=31 Identities=16% Similarity=-0.018 Sum_probs=16.6 Q ss_pred CCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH Q ss_conf 99885988768899-999999999999999995 Q gi|254781086|r 12 RFPPFDTSTFLSQF-FWLAIIFGIFYWVTHRFI 43 (176) Q Consensus 12 gmpqld~~~f~~q~-fw~~I~F~il~~il~~~~ 43 (176) |+ +|+|-.+.-|. |-=++.++|+.+-+.+|+ T Consensus 65 Gv-GF~PR~~~Wq~lF~Pl~a~~il~~gL~~~f 96 (97) T PRK10588 65 GV-GFRPKKVLWQGIFCPLLADIVLIVGLIFFF 96 (97) T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 45-757026889999704879999999999972 No 231 >COG2364 Predicted membrane protein [Function unknown] Probab=28.99 E-value=41 Score=14.42 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=18.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98876889999999999999999999554 Q gi|254781086|r 17 DTSTFLSQFFWLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 17 d~~~f~~q~fw~~I~F~il~~il~~~~~~ 45 (176) +|+.|.+..+|++|..+++-+-..-|+-| T Consensus 99 ~p~~~~~k~i~~~iG~vL~g~Gt~iyv~~ 127 (210) T COG2364 99 TPTALFSKLIFFLIGLVLIGLGTAIYVTA 127 (210) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHEEEEC T ss_conf 80789999999999999997402126735 No 232 >PRK10132 hypothetical protein; Provisional Probab=28.44 E-value=43 Score=14.31 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999 Q gi|254781086|r 64 KMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFE 113 (176) Q Consensus 64 ~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~ 113 (176) .++.++.+...+....++.|...-..+.+-.++.+.+++....+.+..+. T Consensus 13 ~~edL~~dl~~LaDtLEeVL~ssgd~ak~e~~~lR~kAe~~LketR~rL~ 62 (108) T PRK10132 13 GVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 29999999999999999999974403278999999999999999999874 No 233 >pfam07406 NICE-3 NICE-3 protein. This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC) which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis. The function of NICE-3 is unknown. Probab=28.12 E-value=15 Score=17.06 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=14.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68998859887688999999999999999999 Q gi|254781086|r 10 SSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 10 ~~gmpqld~~~f~~q~fw~~I~F~il~~il~~ 41 (176) +++|+||.+.+-+--+-..+..|++++.+.++ T Consensus 2 ~~~~~~lsGV~vvlii~~Gvl~~vllfIFaKR 33 (186) T pfam07406 2 ASLMEKLSGVNVVLVIAYGVLVFVLLFIFVKR 33 (186) T ss_pred HHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH T ss_conf 26887744976986327669999999999988 No 234 >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Probab=28.03 E-value=44 Score=14.27 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=40.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH Q ss_conf 9999999999999955408999999999999-----99999999999-----------------9999999999999999 Q gi|254781086|r 29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLIS-----SDQEKMDSAKR-----------------EVESMISSYEESLAIA 86 (176) Q Consensus 29 ~I~F~il~~il~~~~~~pi~~~l~~R~~~I~-----~~l~~A~~~~~-----------------eae~~~~~~e~~l~ea 86 (176) +|.|..+-+++++-.+..| .-+++|+..|. +++....+++- -........++.|-+| T Consensus 12 lv~~~~~g~~lRkk~~~rI-~~LEe~K~el~~lPv~dEi~kVK~L~L~GQTe~~Fe~Wrq~W~di~~~~fadvEE~lfeA 90 (570) T COG4477 12 LVAAYAVGYLLRKKNYQRI-DKLEERKNELLNLPVNDEISKVKKLHLTGQTETKFEEWRQKWDDIVTNSFADVEEHLFEA 90 (570) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999997389899-999998999981994457999752701374199999998788998875053399998778 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999 Q gi|254781086|r 87 RAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID 128 (176) Q Consensus 87 k~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~ 128 (176) ..-+..-.=..-...-..++..+.-++.++++++.....-+. T Consensus 91 E~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~ 132 (570) T COG4477 91 EALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVE 132 (570) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 872335626876635746999999999999999999999999 No 235 >TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.. Probab=27.97 E-value=44 Score=14.26 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=28.4 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5645334689988598876889999999999999999999554 Q gi|254781086|r 3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~ 45 (176) +||+++-=|=.-|+=.+--.+|++-.++.|+|+++++-+..++ T Consensus 109 asCgaDnigiyvPyF~TLs~~~l~~t~ivFlImv~~l~f~~yr 151 (196) T TIGR00779 109 ASCGADNIGIYVPYFVTLSMTELLVTLIVFLIMVAVLCFVAYR 151 (196) T ss_pred HCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 1367564304516301545999999999999999999999888 No 236 >COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=27.49 E-value=34 Score=14.95 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=18.5 Q ss_pred CCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHH Q ss_conf 53346899885-----988768899999999999999 Q gi|254781086|r 6 SSDFSSRFPPF-----DTSTFLSQFFWLAIIFGIFYW 37 (176) Q Consensus 6 ~~~~~~gmpql-----d~~~f~~q~fw~~I~F~il~~ 37 (176) ..|.=+|||-| =.++|.++++|++...++|-| T Consensus 179 fIEvws~mP~lyllii~as~~~p~f~~ll~i~llf~W 215 (341) T COG4239 179 FIEVWSGMPTLYLLIILASIFQPNFWWLLGIMLLFGW 215 (341) T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999844729999999999968547999999999999 No 237 >PRK11029 FtsH protease regulator HflC; Provisional Probab=27.48 E-value=45 Score=14.21 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999 Q gi|254781086|r 84 AIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKAS 135 (176) Q Consensus 84 ~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~ 135 (176) .-.++|...+-...+.++++.....+.+++.+...++++|.++-...|.+.- T Consensus 225 ~rM~aER~~~A~~~raeG~~~a~~Ira~ad~e~~~i~AeA~r~a~~irgegd 276 (334) T PRK11029 225 NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD 276 (334) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999998789999998988888889998889989999983788 No 238 >pfam05568 ASFV_J13L African swine fever virus J13L protein. This family consists of several African swine fever virus J13L proteins. Probab=27.42 E-value=45 Score=14.20 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=21.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 598876889999999999999999999554089999999999999999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQE 63 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~ 63 (176) --|+||..-.+-.+|..++|+.++.-++| .+..|+.+-...++ T Consensus 22 ~tpsffsthmytiliaivvliiiiivliy-----lfssrkkkaaaaie 64 (189) T pfam05568 22 PAPSFFSTHMYTILIAIVVLIIIIIVLIY-----LFSSRKKKAAAAIE 64 (189) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCHHHHHHHHH T ss_conf 88206778899999999999999999999-----97220367653200 No 239 >PRK10573 type IV pilin biogenesis protein; Provisional Probab=27.21 E-value=45 Score=14.18 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=17.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9887688999999999999999999955 Q gi|254781086|r 17 DTSTFLSQFFWLAIIFGIFYWVTHRFIL 44 (176) Q Consensus 17 d~~~f~~q~fw~~I~F~il~~il~~~~~ 44 (176) +.+.|+...+|+++.++++.+++.++++ T Consensus 208 ~~s~~l~~~~~~~l~~~~~~~~~~~~~~ 235 (397) T PRK10573 208 ALATFLSQWGWLLLLLGFLLAIANRLLR 235 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999998 No 240 >KOG4610 consensus Probab=26.94 E-value=46 Score=14.15 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=25.1 Q ss_pred CCCCCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4689988-------------5988768899999999999999999995540 Q gi|254781086|r 9 FSSRFPP-------------FDTSTFLSQFFWLAIIFGIFYWVTHRFILPR 46 (176) Q Consensus 9 ~~~gmpq-------------ld~~~f~~q~fw~~I~F~il~~il~~~~~~p 46 (176) -++|+|+ -||.++.. ++=.|+.+.+++.++++|+ T Consensus 137 nseg~~~vatll~q~~valk~n~d~~~q----lieqflll~livgrwllpk 183 (328) T KOG4610 137 NSEGFEPVATLLGQAGVALKDNPDLRLQ----LIEQFLLLILIVGRWLLPK 183 (328) T ss_pred CCCCCCCHHHHHCCCCEEECCCHHHHHH----HHHHHHHHHHHHHHHCCCC T ss_conf 7778983455632587342158148999----9999999999986321677 No 241 >MTH00170 ATP8 ATP synthase F0 subunit 8; Provisional Probab=26.89 E-value=46 Score=14.14 Aligned_cols=16 Identities=25% Similarity=0.879 Sum_probs=10.4 Q ss_pred CCCCCHHHHHH--HHHHH Q ss_conf 98859887688--99999 Q gi|254781086|r 13 FPPFDTSTFLS--QFFWL 28 (176) Q Consensus 13 mpqld~~~f~~--q~fw~ 28 (176) ||-|-|=.|+. -+||+ T Consensus 1 MPHLsPmsWl~a~~~fwf 18 (53) T MTH00170 1 MPHLSPMSWLTAMIIFWF 18 (53) T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 997554789999999999 No 242 >COG3541 Predicted nucleotidyltransferase [General function prediction only] Probab=26.81 E-value=34 Score=14.92 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=10.3 Q ss_pred CCCCCCCCCHHHHHHH Q ss_conf 4689988598876889 Q gi|254781086|r 9 FSSRFPPFDTSTFLSQ 24 (176) Q Consensus 9 ~~~gmpqld~~~f~~q 24 (176) .++|+|++|++.+..| T Consensus 156 ~~~~~pp~df~~lld~ 171 (248) T COG3541 156 EKLGIPPMDFEELLDQ 171 (248) T ss_pred HHCCCCCCCHHHHHHH T ss_conf 6089998429999875 No 243 >MTH00012 ND3 NADH dehydrogenase subunit 3; Validated Probab=26.66 E-value=46 Score=14.11 Aligned_cols=31 Identities=42% Similarity=0.716 Sum_probs=19.9 Q ss_pred CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 453346899885988--7688999999999999 Q gi|254781086|r 5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF 35 (176) Q Consensus 5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il 35 (176) ..|..+.|+++.+.+ -|..+.|-.++.|++| T Consensus 35 K~spyECGf~p~~~~r~~Fsv~FfliailFliF 67 (117) T MTH00012 35 KLSPFECGFDPKNSARIPFSMRFFLLAIIFIVF 67 (117) T ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 077816696999987775520089999999999 No 244 >pfam10523 BEN BEN domain. The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription. Probab=26.62 E-value=46 Score=14.11 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=19.3 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 346899885988768899999999999999999995540899999 Q gi|254781086|r 8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME 52 (176) Q Consensus 8 ~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~ 52 (176) .+++|-|+|||.-. -.+..++.-++-...-.|+.+...|+ T Consensus 29 ~~~~~~~~Ld~~~l-----~~Ir~~v~~~~~~~~~~~~~~~~~I~ 68 (78) T pfam10523 29 DGSDGKPGLDPNKL-----NAIRNYVEERFPLEKKVWRECLQSIN 68 (78) T ss_pred CCCCCCCCCCHHHH-----HHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 56666625998999-----99999999988964368999999999 No 245 >pfam06305 DUF1049 Protein of unknown function (DUF1049). This family consists of several hypothetical bacterial proteins of unknown function. Probab=26.42 E-value=47 Score=14.09 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7688999999999999999999955408 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) +..|...|++++|++-+++.+-+.+|.. T Consensus 28 ~~~pl~l~ll~~f~~G~~lg~L~~~~~~ 55 (80) T pfam06305 28 GEFPLSLLLLIAFALGFLLGWLISLPFY 55 (80) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7603999999999999999999999999 No 246 >TIGR00819 ydaH AbgT transporter family; InterPro: IPR011540 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs . p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae . Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity .. Probab=26.39 E-value=47 Score=14.08 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85988768899999999999999999995540899999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDS 67 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~ 67 (176) |-|....+|.+.=.+|.|++|+|.+.-.+|..+++.+...++-..-..|.-++ T Consensus 305 P~~~~V~~SPF~K~IV~lI~LlF~~~~~~YG~~TR~~R~~~~~~~~M~E~M~~ 357 (527) T TIGR00819 305 PITGLVAGSPFLKSIVVLIILLFALVSLVYGIITRSLRREADLVNLMIESMKE 357 (527) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 87772348831678999999999998898865654320000147888754887 No 247 >smart00030 CLb CLUSTERIN Beta chain. Probab=26.32 E-value=47 Score=14.08 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 540899999999---999999999999999999999999999999999999999999 Q gi|254781086|r 44 LPRLSSIMEVRR---NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKV 97 (176) Q Consensus 44 ~~pi~~~l~~R~---~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a 97 (176) .+.++.+|+.+. ..+-..|+.+.+-+++|-++..+.+++|.+...-+++-+... T Consensus 31 vKqMK~~mer~~eeh~~lm~tLek~kkeKeeAl~~~~e~e~kL~Eee~vCnetm~~l 87 (206) T smart00030 31 VKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMAL 87 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999998712899999999999999899999999999999988898888989999 No 248 >PRK11560 phosphoethanolamine transferase; Provisional Probab=25.99 E-value=47 Score=14.04 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999554089999 Q gi|254781086|r 38 VTHRFILPRLSSIM 51 (176) Q Consensus 38 il~~~~~~pi~~~l 51 (176) +..+++++|+.-++ T Consensus 68 l~~r~~~K~~~~ll 81 (556) T PRK11560 68 LFGRRFWRVLASLV 81 (556) T ss_pred HHHHHHHHHHHHHH T ss_conf 87689999999999 No 249 >MTH00161 ND3 NADH dehydrogenase subunit 3; Provisional Probab=25.93 E-value=48 Score=14.03 Aligned_cols=31 Identities=42% Similarity=0.720 Sum_probs=19.8 Q ss_pred CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 453346899885988--7688999999999999 Q gi|254781086|r 5 SSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF 35 (176) Q Consensus 5 ~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il 35 (176) ..|+.+.|+.|.+.+ -|..+.|-.++.|++| T Consensus 33 K~spyECGf~p~~~~r~~Fsi~FylvailFliF 65 (113) T MTH00161 33 KNSPFECGFDPKSSARLPFSLRFFLIAIIFLIF 65 (113) T ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 088857697999987777760699999999999 No 250 >TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane. Probab=25.60 E-value=48 Score=13.99 Aligned_cols=25 Identities=8% Similarity=-0.101 Sum_probs=15.9 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 334689988598876889999999999999 Q gi|254781086|r 7 SDFSSRFPPFDTSTFLSQFFWLAIIFGIFY 36 (176) Q Consensus 7 ~~~~~gmpqld~~~f~~q~fw~~I~F~il~ 36 (176) ....+||||-|| ++|..+|+-++|+ T Consensus 51 ~p~~fg~~g~N~-----~lfn~i~tgiLfi 75 (675) T TIGR01497 51 APALFGTKGKNL-----RLFNAIVTGILFI 75 (675) T ss_pred HHHCCCCCCCCH-----HHHHHHHHHHHHH T ss_conf 341378998668-----9999999999999 No 251 >pfam05337 CSF-1 Macrophage colony stimulating factor-1 (CSF-1). Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption. Probab=25.34 E-value=49 Score=13.97 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=17.1 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 564533468998859887688999999999999999 Q gi|254781086|r 3 SSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWV 38 (176) Q Consensus 3 ~~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~i 38 (176) +....+++++ ||+-. -+||+++-=+||+++ T Consensus 211 he~Q~egssd-PQlp~-----fvf~lLvPsIILVLL 240 (285) T pfam05337 211 HERQHEGSSD-PQLPE-----FVFHLLVPSIILVLL 240 (285) T ss_pred CCCCCCCCCC-CCCCC-----HHHHHHHHHHHHHHH T ss_conf 2012478998-66631-----123201103678886 No 252 >pfam03279 Lip_A_acyltrans Bacterial lipid A biosynthesis acyltransferase. Probab=25.22 E-value=49 Score=13.95 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=31.4 Q ss_pred CCCCCHHHHHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH Q ss_conf 9885988768899--99999999999999--------99955408999999999999999999--9999999999999 Q gi|254781086|r 13 FPPFDTSTFLSQF--FWLAIIFGIFYWVT--------HRFILPRLSSIMEVRRNLISSDQEKM--DSAKREVESMISS 78 (176) Q Consensus 13 mpqld~~~f~~q~--fw~~I~F~il~~il--------~~~~~~pi~~~l~~R~~~I~~~l~~A--~~~~~eae~~~~~ 78 (176) ||+|..++.-+.. .|+++.|+-++-+| ..++..-+-.+...|+..+..+|.-| +....+.+++..+ T Consensus 1 ~~~f~~~~l~pky~~~wl~~~ll~l~~~LP~~~~~~lg~~lg~l~~~~~~~rr~va~~NL~~~fPe~s~~e~~~l~~~ 78 (295) T pfam03279 1 DPKFKKELLHPRYWLTWLGIGVLRLLAALPYSALRRLGKGLGRLAGRFGKRRRKIARKNLALCFPEMSEAEREKIIDQ 78 (295) T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 996741012846799999999999999888999999999999999896440889999999996799999999999999 No 253 >COG3952 Predicted membrane protein [Function unknown] Probab=25.07 E-value=49 Score=13.93 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=21.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 59887688999999999999999999955408 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176) |+.+....++.|.+|.|...+++-.+|+..=+ T Consensus 15 lh~~~~~~~l~W~LiG~~g~~lFt~Rf~VQw~ 46 (113) T COG3952 15 LHLNLPKAFLSWKLIGFSGQLLFTGRFVVQWL 46 (113) T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 30447387789999988999999899999999 No 254 >PTZ00234 variable surface protein Vir12; Provisional Probab=24.83 E-value=34 Score=14.94 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=24.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999955408999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRN 56 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~ 56 (176) .||.+||=. ++--+-+.++++||..|+--.||..-+.+|+. T Consensus 358 ~LdSNffRN-IIMaaAILGtIfFLFYYN~SS~lkS~~~KrKr 398 (433) T PTZ00234 358 ILKSEYFRH-SIVGASIIGVLVFLFFFFKSTPIRSQTNKGEK 398 (433) T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC T ss_conf 000189999-99999999999998630036664345787666 No 255 >pfam06212 GRIM-19 GRIM-19 protein. This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-# and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity. Probab=24.71 E-value=50 Score=13.89 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=16.5 Q ss_pred CCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 346899885988-----7688999999999999999999 Q gi|254781086|r 8 DFSSRFPPFDTS-----TFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 8 ~~~~gmpqld~~-----~f~~q~fw~~I~F~il~~il~~ 41 (176) .-.||.|+++.. .+++-...+++.++++.+-.++ T Consensus 10 PP~GGY~pv~ykR~~p~~g~sg~~~~~~~~~~~~~G~y~ 48 (130) T pfam06212 10 PPPGGYGPIPFKRNLPKTGFSGYAMFATGAGATAFGYYR 48 (130) T ss_pred CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999998866022038866788589999999999999999 No 256 >COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion] Probab=24.70 E-value=50 Score=13.89 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=22.3 Q ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5988768--899999999999999999995540899999999999999999999999999999999999999 Q gi|254781086|r 16 FDTSTFL--SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAI 85 (176) Q Consensus 16 ld~~~f~--~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~e 85 (176) +|..-|+ +++|.-+..-+..+.+.|.|+|. ..++++.. .+.+=+.+...|..+... T Consensus 14 ~Ni~eWpl~~rlv~~lL~~~~V~~lGy~f~~s---~k~eel~~-----------~~~eEe~LKs~~q~K~~~ 71 (211) T COG3167 14 LNIGEWPLAPRLVFCLLAVAAVLGLGYAFYLS---GKLEELEE-----------LEAEEEELKSTYQQKAIQ 71 (211) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHH-----------HHHHHHHHHHHHHHHHHH T ss_conf 56543200379999999999999999999854---07888999-----------987799999999999998 No 257 >TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding. Probab=24.66 E-value=50 Score=13.89 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=40.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD 129 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~ 129 (176) +..|.+...+|+...+ .-+..+..-++|.++..++-.+.......-+......+.+++..+.+.++.+.. T Consensus 502 ~~Ei~rm~~eAe~~~~-----~D~~~~E~~e~rN~ad~~~y~~e~~l~e~gd~~~~~~k~~~~~~~~~~~~~~~~ 571 (598) T TIGR02350 502 EEEIERMVKEAEANAE-----EDKKRKEEVEARNEADSLIYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKG 571 (598) T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 8999999999999898-----638888888753368999999999987421014778899999999999999850 No 258 >MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional Probab=24.63 E-value=49 Score=13.93 Aligned_cols=32 Identities=31% Similarity=0.666 Sum_probs=19.6 Q ss_pred CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 6453346899885988--7688999999999999 Q gi|254781086|r 4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF 35 (176) Q Consensus 4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il 35 (176) +..|..+.|++|++.+ -|..+.|-.+|.|++| T Consensus 32 eK~spyECGf~p~~~ar~~Fsi~FylvailFliF 65 (115) T MTH00106 32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLF 65 (115) T ss_pred CCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH T ss_conf 2388847798999876666731259999999999 No 259 >PTZ00186 heat shock 70 kDa precursor protein; Provisional Probab=24.56 E-value=50 Score=13.87 Aligned_cols=93 Identities=9% Similarity=0.106 Sum_probs=47.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999------ Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID------ 128 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~------ 128 (176) ++.|+..+++|++..++= +..+.+.++|.++..++-..+...... +..-..-+..++..+.+.++.++ T Consensus 529 ~~ei~~mi~ea~~~~~~D-----~~~re~~e~kn~~e~~i~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 602 (657) T PTZ00186 529 KEQIEQMIRDSEQHAEAD-----RVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMENPNVAK 602 (657) T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 999999999999889988-----999999998888999999999764020-35998899999999999999974898478 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999 Q gi|254781086|r 129 DMQKKASQEVYSIVGEVTKDLVRKL 153 (176) Q Consensus 129 ~~k~~a~~ei~~~a~~~a~~i~~kl 153 (176) ..-+.+..++.+.+..++..+..+- T Consensus 603 ~~~~~~~~~l~~~~~~~~~~~y~~~ 627 (657) T PTZ00186 603 DDLAAATDKLQKAVMECGRTEYQQA 627 (657) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999999861 No 260 >pfam11696 DUF3292 Protein of unknown function (DUF3292). This eukaryotic family of proteins has no known function. Probab=24.12 E-value=51 Score=13.82 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=15.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 59887688999999999999999999955408999 Q gi|254781086|r 16 FDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI 50 (176) Q Consensus 16 ld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~ 50 (176) |+..||..=+|-+++ ..++.+++--+++||...+ T Consensus 129 Fc~vYf~AWllD~l~-P~~~~~Li~LI~~P~~R~~ 162 (641) T pfam11696 129 FCAVYFVAWLLDLLV-PTIFGFLITLVLWPPSRKY 162 (641) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHEECCCHHHH T ss_conf 788999999998899-9999999997027421300 No 261 >TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation. Probab=24.12 E-value=51 Score=13.82 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999995540 Q gi|254781086|r 26 FWLAIIFGIFYWVTHRFILPR 46 (176) Q Consensus 26 fw~~I~F~il~~il~~~~~~p 46 (176) +|.++.|+||+.|+-++..++ T Consensus 24 ~~~~~~~~iL~gL~~~~~~s~ 44 (613) T TIGR02759 24 YAALILFVILTGLILWLVASA 44 (613) T ss_pred HHHHHHHHHHHHHHHHHHCCH T ss_conf 999999999999999985560 No 262 >TIGR02282 MltB lytic murein transglycosylase B; InterPro: IPR011757 This family consists of lytic murein transglycosylases (murein hydrolases) related to MltB (P41052 from SWISSPROT), which is a 38 kDa membrane-bound lipoprotein in Escherichia coli. The N-terminal region of this protein contains a lipoprotein-processing site which is conserved in about half the members of this family. Proteolytic cleavage of MltB produces a fully-active, soluble form of this enzyme known as Slt35 (for soluble lytic transglycosylase). This enzyme catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. Its physiological role is unknown as deletion of the gene shows no obvious phenotype , though it has been suggested to play a role in recycling of muropeptides during cell elongation and/or cell division. The Slt35 enzyme is a monomer with an ellipsoid shape and is composed of three distinct domains known as the alpha, beta and core domains , . The alpha domain contains mainly alpha-helices, while the beta domain consists of a five-stranded antiparallel beta-sheet flanked by a short alpha-helix. The core domain is sandwiched between the alpha and beta domains and its fold is similar to that of lysozyme, but contains a single metal ion binding site in a helix-loop-helix module that is similar to the eukaryotic EF-hand calcium-binding fold, though in this case the loop is slightly longer than usual. Binding of Ca(2+) to this EF hand motif has been shown to be important for thermal stability of the protein . The substrate binding sites are found in the cleft formed by the core domain of the enzyme . Members of this family do not contain the putative peptidoglycan binding domain described by IPR002477 from INTERPRO, which is associated with several other classes of bacterial cell wall lytic enzymes.. Probab=24.05 E-value=31 Score=15.14 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=7.5 Q ss_pred CCCCCCHHHH Q ss_conf 9988598876 Q gi|254781086|r 12 RFPPFDTSTF 21 (176) Q Consensus 12 gmpqld~~~f 21 (176) |||||=||+| T Consensus 176 G~pQFMPSSY 185 (323) T TIGR02282 176 GIPQFMPSSY 185 (323) T ss_pred CCCCCCHHHH T ss_conf 6666650356 No 263 >pfam01098 FTSW_RODA_SPOVE Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE Probab=23.95 E-value=52 Score=13.80 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 876889999999999999999 Q gi|254781086|r 19 STFLSQFFWLAIIFGIFYWVT 39 (176) Q Consensus 19 ~~f~~q~fw~~I~F~il~~il 39 (176) .+|..|++|.++.+++++++. T Consensus 36 ~~~~kQ~~~~~iG~~~~~~~~ 56 (356) T pfam01098 36 FFFKRQLVYLLLGFIIFVVLL 56 (356) T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999 No 264 >cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related Probab=23.77 E-value=52 Score=13.78 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=18.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899885988768899999999999999999 Q gi|254781086|r 11 SRFPPFDTSTFLSQFFWLAIIFGIFYWVTH 40 (176) Q Consensus 11 ~gmpqld~~~f~~q~fw~~I~F~il~~il~ 40 (176) -|.|.-||.+|..+.+|....++.++.+.. T Consensus 86 Tn~p~~DPD~~~~~~~~~~~~~~~~~~~~~ 115 (207) T cd03514 86 TNDPEKDPDHFLLEWLVARSLFITLLVIAI 115 (207) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 485988802888999999999999999999 No 265 >KOG3807 consensus Probab=23.76 E-value=52 Score=13.78 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=4.9 Q ss_pred CCCCCCCCCHH Q ss_conf 46899885988 Q gi|254781086|r 9 FSSRFPPFDTS 19 (176) Q Consensus 9 ~~~gmpqld~~ 19 (176) ..|..|||||. T Consensus 5 ~~~~~~~l~~~ 15 (556) T KOG3807 5 SPASVPGLNPT 15 (556) T ss_pred CCCCCCCCCCC T ss_conf 65640025751 No 266 >COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Probab=23.75 E-value=52 Score=13.78 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999955408999999 Q gi|254781086|r 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 25 ~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) +.-.+|+|+|.-|.+ .++.+++.+..+. T Consensus 73 Fi~~vinFlIiAf~i-Fl~Vk~inkl~~~ 100 (130) T COG1970 73 FIQAVINFLIIAFAI-FLVVKAINKLRRK 100 (130) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH T ss_conf 999999999999999-9999999998887 No 267 >PRK10697 DNA-binding transcriptional activator PspC; Provisional Probab=23.64 E-value=53 Score=13.76 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=5.1 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9887688999999 Q gi|254781086|r 17 DTSTFLSQFFWLA 29 (176) Q Consensus 17 d~~~f~~q~fw~~ 29 (176) |...|.--++|++ T Consensus 31 ~v~~~~vR~~~vl 43 (119) T PRK10697 31 DVPVKLVRIIVVL 43 (119) T ss_pred CCCHHHHHHHHHH T ss_conf 9935999999999 No 268 >cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria. Probab=23.29 E-value=53 Score=13.72 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=12.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~ 41 (176) .||.....--+|| |+|..|++.|.+ T Consensus 9 ~~DvAql~ly~FW--iFFagLv~YL~r 33 (246) T cd00226 9 YFDLAQLVIYAFW--IFFAGLIYYLRR 33 (246) T ss_pred EEEHHHHHHHHHH--HHHHHHHHHHHC T ss_conf 3259999999999--999999998612 No 269 >PRK11465 hypothetical protein; Provisional Probab=23.22 E-value=54 Score=13.71 Aligned_cols=37 Identities=35% Similarity=0.678 Sum_probs=18.1 Q ss_pred CCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46899885988768---89999999999999999999554 Q gi|254781086|r 9 FSSRFPPFDTSTFL---SQFFWLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 9 ~~~gmpqld~~~f~---~q~fw~~I~F~il~~il~~~~~~ 45 (176) .++|+.++|...|. .++-|+++.-+.+|+++++...| T Consensus 122 ~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~llR~l~~~ 161 (741) T PRK11465 122 TGSPHKPFNPQTFSNALTHFLMLAVLVFGFYWLIRLCALP 161 (741) T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4488777654689999999999999999999999999999 No 270 >PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional Probab=23.17 E-value=54 Score=13.71 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=5.9 Q ss_pred CCCCCHHHHH Q ss_conf 9885988768 Q gi|254781086|r 13 FPPFDTSTFL 22 (176) Q Consensus 13 mpqld~~~f~ 22 (176) .|+++..+|+ T Consensus 94 ~Pp~~~~t~l 103 (126) T PRK10144 94 NPPLTGQTLV 103 (126) T ss_pred ECCCCCCHHH T ss_conf 1899956189 No 271 >COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion] Probab=23.15 E-value=54 Score=13.71 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=21.9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998859887688999999999999999999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~ 41 (176) -+||+|. ++++.-+-+++.++++|+++.- T Consensus 206 ~~PQinv-f~ig~Pl~i~~Gl~lL~~~lp~ 234 (258) T COG1684 206 LAPQLNV-FFIGFPLKIAVGLLLLYLILPL 234 (258) T ss_pred CCCCCCH-HHHHHHHHHHHHHHHHHHHHHH T ss_conf 2542006-8755319999999999999999 No 272 >TIGR02214 spoVD_pbp stage V sporulation protein D; InterPro: IPR011927 This entry describes the SpoVD family of homologs of the cell division protein FtsI, a penicillin binding protein. This family is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of SpoVD.. Probab=23.13 E-value=44 Score=14.21 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHH Q ss_conf 999999999999999-9955408--99999999 Q gi|254781086|r 26 FWLAIIFGIFYWVTH-RFILPRL--SSIMEVRR 55 (176) Q Consensus 26 fw~~I~F~il~~il~-~~~~~pi--~~~l~~R~ 55 (176) ..+||+|+++|++|. |++|=.+ .+.+.+|- T Consensus 3 ~~~Li~~~~lf~~~~~rL~yv~v~~g~~y~~~A 35 (660) T TIGR02214 3 IVILISIVVLFLILSLRLFYVQVFRGSRYKEMA 35 (660) T ss_pred EHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHH T ss_conf 134789999999987421037897144478887 No 273 >MTH00101 ATP6 ATP synthase F0 subunit 6; Validated Probab=23.12 E-value=54 Score=13.70 Aligned_cols=50 Identities=26% Similarity=0.281 Sum_probs=25.2 Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH Q ss_conf 885988768-89999999999999999999554-089999999999999999 Q gi|254781086|r 14 PPFDTSTFL-SQFFWLAIIFGIFYWVTHRFILP-RLSSIMEVRRNLISSDQE 63 (176) Q Consensus 14 pqld~~~f~-~q~fw~~I~F~il~~il~~~~~~-pi~~~l~~R~~~I~~~l~ 63 (176) -||||++.. -++.|+++.|..+++.-.+++.| +.....+-=.+.+.+++. T Consensus 7 s~Fdp~s~~~~~l~~~~~~~~~~~~~~~~~~vp~r~~~~~e~~~~~~~~~i~ 58 (226) T MTH00101 7 ASFITPTMMGLPIVILIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMM 58 (226) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 2266848887999999999999999644531476999999999999999998 No 274 >COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones] Probab=23.09 E-value=54 Score=13.70 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=9.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 8859887688999999999999 Q gi|254781086|r 14 PPFDTSTFLSQFFWLAIIFGIF 35 (176) Q Consensus 14 pqld~~~f~~q~fw~~I~F~il 35 (176) |+|+..|+ +.|+.=.++++ T Consensus 99 Pp~~~~T~---lLW~~Pv~lll 117 (153) T COG3088 99 PPLTGQTL---LLWGLPVVLLL 117 (153) T ss_pred CCCCHHHH---HHHHHHHHHHH T ss_conf 99743589---99995999999 No 275 >pfam11119 DUF2633 Protein of unknown function (DUF2633). This family is conserved largely in the Bacillaceae family. Several members are named as YfgG. The function is not known. Probab=23.03 E-value=54 Score=13.69 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999554 Q gi|254781086|r 27 WLAIIFGIFYWVTHRFILP 45 (176) Q Consensus 27 w~~I~F~il~~il~~~~~~ 45 (176) -++|+|+|||.=+-|.... T Consensus 13 VLLISFiilFgRl~Y~aI~ 31 (59) T pfam11119 13 VLLISFIIFFGRLIYSAIN 31 (59) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999998774 No 276 >PRK11089 glucose-specific PTS system IIBC components; Provisional Probab=22.93 E-value=44 Score=14.24 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=6.3 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999955 Q gi|254781086|r 27 WLAIIFGIFYWVTHRFIL 44 (176) Q Consensus 27 w~~I~F~il~~il~~~~~ 44 (176) |.++..++.++++++|++ T Consensus 355 ~~~i~vGi~~~~iYy~vF 372 (477) T PRK11089 355 WLFPIVGIGYAIVYYTIF 372 (477) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 789999999999999999 No 277 >COG4327 Predicted membrane protein [Function unknown] Probab=22.90 E-value=54 Score=13.67 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254781086|r 24 QFFWLAIIFGIFYW 37 (176) Q Consensus 24 q~fw~~I~F~il~~ 37 (176) ..+|++|+|++.+| T Consensus 25 L~vwflVSfvvi~f 38 (101) T COG4327 25 LGVWFLVSFVVILF 38 (101) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 278 >MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional Probab=22.85 E-value=54 Score=13.67 Aligned_cols=32 Identities=41% Similarity=0.722 Sum_probs=21.1 Q ss_pred CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 6453346899885988--7688999999999999 Q gi|254781086|r 4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF 35 (176) Q Consensus 4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il 35 (176) +..|+.+.|+.|++.+ -|.-+.|-.+|.|++| T Consensus 32 eK~spyECGfdp~~~aR~~FsirFfLvailFlIF 65 (114) T MTH00202 32 EKSSPFECGFDPKESSRIPFSFRFFLMAVIFLVF 65 (114) T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 2078846687999877776620299999999999 No 279 >KOG2264 consensus Probab=22.48 E-value=55 Score=13.62 Aligned_cols=27 Identities=37% Similarity=0.798 Sum_probs=15.9 Q ss_pred CCCCCCCCHHHHHHHHHHHH-HHHHHHHH Q ss_conf 68998859887688999999-99999999 Q gi|254781086|r 10 SSRFPPFDTSTFLSQFFWLA-IIFGIFYW 37 (176) Q Consensus 10 ~~gmpqld~~~f~~q~fw~~-I~F~il~~ 37 (176) .|-.|+|.-+-|+- +.|+. |.|+|+|+ T Consensus 15 ~s~~~~lR~S~~~r-~~w~~~~l~iil~~ 42 (907) T KOG2264 15 GSFVPSLRVSAFLR-FIWFVFILYIILYN 42 (907) T ss_pred CCCCEEEEEHHHHH-HHHHHHHHHHHHHH T ss_conf 87470345121378-89999999999863 No 280 >pfam00507 Oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3. Probab=22.31 E-value=56 Score=13.60 Aligned_cols=32 Identities=34% Similarity=0.673 Sum_probs=19.8 Q ss_pred CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 6453346899885988--7688999999999999 Q gi|254781086|r 4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF 35 (176) Q Consensus 4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il 35 (176) +..+..+.|+++.+.+ .|..+.|-.++.|++| T Consensus 22 eK~s~yECGf~p~~~~r~~Fsi~fyliailFliF 55 (102) T pfam00507 22 EKLSPYECGFDPLGKARLPFSLRFFLIAILFLIF 55 (102) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 1078817795998877775358999999999999 No 281 >pfam05957 DUF883 Bacterial protein of unknown function (DUF883). This family consists of several hypothetical bacterial proteins of unknown function. Probab=22.29 E-value=56 Score=13.60 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=20.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999 Q gi|254781086|r 69 KREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEK 114 (176) Q Consensus 69 ~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ 114 (176) ..+...+..+.+.-+..+......-..+++..+....+..+..+.. T Consensus 4 ~~dl~~L~~d~e~Ll~~~~~~~~~~~~~~R~r~~~~l~~ar~~~~~ 49 (94) T pfam05957 4 EDDLRSLLDDLEELLRSAADLAGEEAEELRERAEAALDDARERLGD 49 (94) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999999999999887640346999999999999999999999 No 282 >TIGR01933 hflK HflK protein; InterPro: IPR010201 The accumulation of abnormal membrane proteins is something which must be avoided in order to maintain cell viability. In Escherichia coli, the membrane-bound, ATP-dependent protease FtsH plays a central role in the degradation of these abnormal proteins . Known substrates of this protease include several lambda bacteriophage proteins, the heat-shock transcription factor sigma-32, and the unassembled form of the membrane protein SecY. While FtsH is active as a protease on its own, in vivo it forms a complex with a membrane-bound HflKC heterodimer. HflKC has a generally inhibitory effect on the protease activity of FtsH, though the mechanism of this inhibition is not known. The HflK and HflC polypeptides are paralogous, and often encoded by tandem genes within bacterial genomes. This entry represents the HflK subunit of the HflKC heterodimer.; GO: 0005515 protein binding, 0016021 integral to membrane. Probab=22.25 E-value=56 Score=13.60 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999 Q gi|254781086|r 65 MDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEF 107 (176) Q Consensus 65 A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~ 107 (176) ...+=+++..+.++-+.-+.+|+..+++++=+|+-+|.+.+++ T Consensus 174 Vk~AFdDvi~A~ed~~r~I~EA~~y~n~~~P~A~G~A~r~~~e 216 (285) T TIGR01933 174 VKEAFDDVIAAREDEERYINEAEAYANEVVPKARGRAQRIIEE 216 (285) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 1678999998778899999999987603687422765778999 No 283 >pfam10112 Halogen_Hydrol 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds. Probab=22.13 E-value=56 Score=13.58 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781086|r 55 RNLISSDQEKMDSAKREVESMIS 77 (176) Q Consensus 55 ~~~I~~~l~~A~~~~~eae~~~~ 77 (176) ...|++.+++|+..-....+... T Consensus 70 ~~~ir~~L~eA~~ki~~l~k~~~ 92 (199) T pfam10112 70 YKYIRSNLSEAKKKIRRLQKALF 92 (199) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999998 No 284 >PRK13895 conjugal transfer protein TraM; Provisional Probab=21.68 E-value=57 Score=13.52 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254781086|r 93 IIDKVVAAAEQNLEFQREVFEKDLLHK 119 (176) Q Consensus 93 ii~~a~~~a~~~~e~~~~~a~~ei~~~ 119 (176) +++.-+++.+.....+...++..+++. T Consensus 47 ~L~~FKeelE~i~~rW~~dak~KAE~i 73 (144) T PRK13895 47 ILDAFKEELESIAHRWGDDAKGKAERT 73 (144) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999988867789999999 No 285 >MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional Probab=21.63 E-value=58 Score=13.52 Aligned_cols=32 Identities=31% Similarity=0.668 Sum_probs=19.3 Q ss_pred CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 6453346899885988--7688999999999999 Q gi|254781086|r 4 SSSSDFSSRFPPFDTS--TFLSQFFWLAIIFGIF 35 (176) Q Consensus 4 ~~~~~~~~gmpqld~~--~f~~q~fw~~I~F~il 35 (176) ...|..+.|+++++.+ -|..+.|-.++.|++| T Consensus 32 eK~spyECGf~p~~~~r~~Fsi~FyliailFlIF 65 (115) T MTH00113 32 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLF 65 (115) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 1388707686976777876662999999999999 No 286 >PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Probab=21.48 E-value=48 Score=13.98 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=26.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 533468998859887688999999999999999999955408999999999 Q gi|254781086|r 6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRN 56 (176) Q Consensus 6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~ 56 (176) .++...|||..| ||...-.|..|.-++..-+.++|+- +++|+|+. T Consensus 180 ~aA~~~g~~v~~--y~~~~ql~~~i~~~i~~ai~h~f~q----~y~Dkk~~ 224 (452) T PRK10654 180 LAAQASEMPLID--FAFKTTLPISIAAIIGMAIAHFFWQ----RYLDKKEN 224 (452) T ss_pred HHHHHCCCCHHH--EEEECCHHHHHHHHHHHHHHHHHHH----HHHCCCCC T ss_conf 248772998778--0211118999999999999999999----98202136 No 287 >PRK05305 phosphatidylserine decarboxylase; Provisional Probab=21.29 E-value=59 Score=13.47 Aligned_cols=20 Identities=20% Similarity=-0.006 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999955408 Q gi|254781086|r 28 LAIIFGIFYWVTHRFILPRL 47 (176) Q Consensus 28 ~~I~F~il~~il~~~~~~pi 47 (176) +.+.|+++.+++-+|+-.|- T Consensus 33 l~~~~~~~~~~~~~FFRdP~ 52 (214) T PRK05305 33 LAIAGLLLTLFCLYFFRDPE 52 (214) T ss_pred HHHHHHHHHHHHHHHEECCC T ss_conf 99999999999998722888 No 288 >pfam11755 DUF3311 Protein of unknown function (DUF3311). This is a family of short bacterial proteins of unknwon function. Probab=21.21 E-value=59 Score=13.46 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=19.7 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 53346899885988768899999999999999999 Q gi|254781086|r 6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTH 40 (176) Q Consensus 6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~ 40 (176) ....-.|||= +|.=|+.|++++.++++.+-+ T Consensus 21 ~~P~v~G~Pf----f~~w~~~wv~lts~~~~~~y~ 51 (64) T pfam11755 21 VEPLVLGLPF----FYWWQLLWVVLTSVLTAIVYR 51 (64) T ss_pred CCCEECCCCH----HHHHHHHHHHHHHHHHHHHHH T ss_conf 5872327609----999999999999999999998 No 289 >pfam10104 Brr6_like_C_C Di-sulfide bridge nucleocytoplasmic transport domain. Brr6_like_C_C is the highly conserved C-terminal region of a group of proteins found in fungi. It carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulfide bridges to form a complex which is involved in nucleocytoplasmic transport. Probab=21.20 E-value=59 Score=13.46 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 87688999999999999999999955 Q gi|254781086|r 19 STFLSQFFWLAIIFGIFYWVTHRFIL 44 (176) Q Consensus 19 ~~f~~q~fw~~I~F~il~~il~~~~~ 44 (176) +.|+ |+++-++..+++++++..|+. T Consensus 2 ~~yl-Ql~~N~~~~~~~ly~~~~~~~ 26 (135) T pfam10104 2 SSYL-QLIFNIILVSIILYLVYAFFK 26 (135) T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHH T ss_conf 4699-999999999999999999999 No 290 >TIGR01495 ETRAMP early transcribed membrane protein (ETRAMP) family; InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii . A homolog from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane . Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.. Probab=21.12 E-value=59 Score=13.45 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--------HHHHHHHHHHH Q ss_conf 999999999999955408999----99999999--------99999999999 Q gi|254781086|r 30 IIFGIFYWVTHRFILPRLSSI----MEVRRNLI--------SSDQEKMDSAK 69 (176) Q Consensus 30 I~F~il~~il~~~~~~pi~~~----l~~R~~~I--------~~~l~~A~~~~ 69 (176) |.|++.+++.-.|+.|-+... ...|.+.+ -..++.+++-+ T Consensus 6 ilyf~~~l~~~n~i~P~~~~~nv~G~~~~~~~~aeekkrkn~kkl~~~~~~K 57 (99) T TIGR01495 6 ILYFFAALLAINFIAPGYCNNNVAGKVEKKGKIAEEKKRKNLKKLTKAEKKK 57 (99) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCHHCCCCCCHHHHHHHHHCCCCHHHHHH T ss_conf 9999999999998703001211012001478602455541002421899987 No 291 >PRK07928 NADH dehydrogenase subunit A; Validated Probab=20.89 E-value=46 Score=14.12 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=18.0 Q ss_pred CCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHH Q ss_conf 453346899885988----7688999999999999 Q gi|254781086|r 5 SSSDFSSRFPPFDTS----TFLSQFFWLAIIFGIF 35 (176) Q Consensus 5 ~~~~~~~gmpqld~~----~f~~q~fw~~I~F~il 35 (176) ..+.-+.||+|.... -|.-+.+-.++.|++| T Consensus 37 K~spYEcG~~p~~~~~~~~rF~vrfYlvAilFliF 71 (119) T PRK07928 37 KLEAYECGIEPTPQPAGGQRFPVKYYLTAMLFIVF 71 (119) T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH T ss_conf 58867899897777776662225507799999999 No 292 >TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=20.80 E-value=60 Score=13.41 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=18.6 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH Q ss_conf 9999999999-999995540899999999 Q gi|254781086|r 28 LAIIFGIFYW-VTHRFILPRLSSIMEVRR 55 (176) Q Consensus 28 ~~I~F~il~~-il~~~~~~pi~~~l~~R~ 55 (176) ++++|.+|.. ++++++=||.+-+|..|+ T Consensus 12 l~~~l~~~~~~~~wR~~pp~~s~~M~~~~ 40 (228) T TIGR02070 12 LLLNLAVFALVALWRFVPPPVSAFMVERK 40 (228) T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 99999999998887413889886579999 No 293 >PRK03564 formate dehydrogenase accessory protein FdhE; Provisional Probab=20.70 E-value=60 Score=13.40 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=7.4 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 99885988768899999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWL 28 (176) Q Consensus 12 gmpqld~~~f~~q~fw~ 28 (176) |||+||..+|..---|. T Consensus 88 ~~PPL~~~~~~rd~~W~ 104 (307) T PRK03564 88 GKPPLDIHVFPRDKHWQ 104 (307) T ss_pred CCCCCCHHHCCCCHHHH T ss_conf 79988834365675899 No 294 >PRK13386 fliH flagellar assembly protein H; Provisional Probab=20.46 E-value=61 Score=13.37 Aligned_cols=44 Identities=5% Similarity=0.166 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH--HCCHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999-84--15999999999999942106 Q gi|254781086|r 132 KKASQEVYSIVGEVTKDLVRKL-GF--SVSDADVQKILDRKRDGIDA 175 (176) Q Consensus 132 ~~a~~ei~~~a~~~a~~i~~kl-~~--~~~~~~~~~~i~~~~~~i~~ 175 (176) .....++.+...+++..+++++ .. ..+.+.+-.+|.+.+..++. T Consensus 114 ~~~~~~~~~~Ll~La~~vArqVir~El~~~P~~IL~~vreaL~~LP~ 160 (236) T PRK13386 114 AEYEQQQRDELLDLVEKVARQVIRCELTLQPQQILALVEETLAALPD 160 (236) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 99999999999999999999997465025989999999999984767 No 295 >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Probab=20.42 E-value=61 Score=13.36 Aligned_cols=35 Identities=6% Similarity=-0.051 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76889999999999999999999554089999999 Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR 54 (176) Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R 54 (176) +|-.+++|.++.++.++.++..+++|++.+..++- T Consensus 290 ~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~ 324 (709) T COG2274 290 LYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKL 324 (709) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99889999999999999999999799999999999 No 296 >PRK12488 acetate permease; Provisional Probab=20.17 E-value=62 Score=13.33 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=4.4 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254781086|r 142 VGEVTKDLVRK 152 (176) Q Consensus 142 a~~~a~~i~~k 152 (176) +..++.++..+ T Consensus 379 ssaishDlY~~ 389 (549) T PRK12488 379 ASAVSHDLYAC 389 (549) T ss_pred HHHHHHHHHHH T ss_conf 99999999998 Done!