Query gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62] Match_columns 176 No_of_seqs 127 out of 1799 Neff 8.1 Searched_HMMs 23785 Date Wed Jun 1 01:36:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781086.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2cly_A ATP synthase B chain, m 99.8 7.7E-18 3.3E-22 128.7 14.3 155 18-175 48-203 (214) 2 1l2p_A ATP synthase B chain; a 97.8 0.00014 5.7E-09 46.9 9.7 59 81-139 2-60 (61) 3 2cly_A ATP synthase B chain, m 97.7 0.0021 8.9E-08 39.6 14.5 104 12-117 49-159 (214) 4 1b9u_A Protein (ATP synthase); 97.2 0.0002 8.5E-09 45.9 3.6 33 15-52 2-34 (34) 5 3k5b_E V-type ATP synthase sub 96.9 0.019 7.8E-07 33.7 11.5 100 74-174 11-116 (188) 6 1l2p_A ATP synthase B chain; a 96.1 0.07 2.9E-06 30.2 10.0 57 71-127 3-59 (61) 7 2khk_A ATP synthase subunit B; 95.7 0.00068 2.9E-08 42.6 -1.6 50 49-98 2-51 (53) 8 2dm9_A V-type ATP synthase sub 94.7 0.03 1.3E-06 32.5 4.2 52 76-127 16-67 (198) 9 3k5b_E V-type ATP synthase sub 94.5 0.23 9.8E-06 27.0 11.2 45 84-128 10-54 (188) 10 2dm9_A V-type ATP synthase sub 91.4 0.039 1.6E-06 31.7 0.6 56 79-134 8-63 (198) 11 3ghg_A Fibrinogen alpha chain; 88.4 1.2 5.1E-05 22.5 14.3 35 51-85 62-96 (562) 12 1ge9_A Ribosome recycling fact 85.3 1.8 7.5E-05 21.5 8.0 80 41-126 101-180 (184) 13 2k88_A Vacuolar proton pump su 84.1 2 8.5E-05 21.2 7.9 46 82-127 10-55 (60) 14 2kk7_A V-type ATP synthase sub 83.5 2.1 9E-05 21.0 6.0 35 80-114 13-47 (52) 15 1is1_A Ribosome recycling fact 83.1 2.2 9.3E-05 20.9 8.6 83 41-126 99-181 (185) 16 1eh1_A Ribosome recycling fact 81.4 2.6 0.00011 20.5 8.7 82 41-125 100-181 (185) 17 1wqg_A Ribosome recycling fact 81.1 2.6 0.00011 20.5 8.6 83 41-126 99-181 (185) 18 1ise_A Ribosome recycling fact 80.2 2.8 0.00012 20.3 9.0 83 41-126 99-181 (185) 19 1dd5_A Ribosome recycling fact 78.9 3.1 0.00013 20.0 9.1 84 41-127 99-182 (185) 20 1deq_A Fibrinogen (alpha chain 76.5 3.6 0.00015 19.6 18.6 33 46-78 53-85 (390) 21 2rdd_B UPF0092 membrane protei 76.0 1.5 6.3E-05 22.0 2.7 20 23-42 4-23 (37) 22 2oar_A Large-conductance mecha 75.4 3.8 0.00016 19.5 4.6 34 12-49 86-119 (174) 23 3ghg_B Fibrinogen beta chain; 65.1 6.5 0.00028 18.0 13.2 19 49-67 84-102 (461) 24 1m1j_B Fibrinogen beta chain; 63.2 7.1 0.0003 17.8 16.7 42 47-88 87-128 (464) 25 3lhp_S 4E10_D0_1ISEA_004_N (T9 52.7 11 0.00045 16.7 7.2 77 50-127 44-120 (123) 26 3cx5_D Cytochrome C1, heme pro 52.6 11 0.00045 16.7 3.4 23 26-48 210-235 (248) 27 2qjy_B Cytochrome C1; cytochro 51.6 8.9 0.00037 17.2 2.8 32 24-55 228-259 (269) 28 1pp9_D Cytochrome C-1, cytochr 47.5 12 0.0005 16.4 2.9 31 24-54 203-233 (241) 29 1dkx_A Substrate binding domai 46.5 13 0.00056 16.1 9.5 67 56-127 122-188 (219) 30 1u2m_A Histone-like protein HL 44.1 9.9 0.00042 16.9 2.1 44 109-152 69-112 (143) 31 1v54_D Cytochrome C oxidase su 43.2 4.1 0.00017 19.3 0.0 30 24-53 84-113 (147) 32 2f95_B Sensory rhodopsin II tr 42.1 12 0.00049 16.4 2.2 24 38-61 78-101 (163) 33 2wjn_H Reaction center protein 40.0 17 0.00071 15.5 3.3 26 15-41 9-34 (258) 34 3err_A Fusion protein of micro 39.5 17 0.00072 15.4 4.9 24 117-140 59-82 (536) 35 3mk7_C Cytochrome C oxidase, C 38.7 18 0.00074 15.3 3.0 21 18-39 55-75 (311) 36 1gs9_A Apolipoprotein E, APOE4 34.3 21 0.00087 14.9 10.6 16 100-115 92-107 (165) 37 1m1j_A Fibrinogen alpha subuni 33.9 21 0.00088 14.9 15.2 43 51-93 63-105 (491) 38 2zon_G Cytochrome C551; nitrit 28.7 16 0.00066 15.7 1.1 13 4-16 22-34 (87) 39 1eys_H Photosynthetic reaction 27.2 27 0.0011 14.2 3.9 25 15-41 8-32 (259) 40 2eqb_B RAB guanine nucleotide 27.1 27 0.0012 14.2 12.3 24 62-85 35-58 (97) 41 3cu4_A Cytochrome C family pro 26.0 29 0.0012 14.0 2.1 26 9-34 56-81 (85) 42 1rzh_H Reaction center protein 24.6 31 0.0013 13.9 3.8 25 15-41 9-33 (260) 43 1wve_C 4-cresol dehydrogenase 22.6 32 0.0013 13.8 1.7 18 4-21 17-34 (80) No 1 >2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T* Probab=99.78 E-value=7.7e-18 Score=128.74 Aligned_cols=155 Identities=10% Similarity=-0.005 Sum_probs=136.7 Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88768-89999999999999999999554089999999999999999999999999999999999999999999999999 Q gi|254781086|r 18 TSTFL-SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDK 96 (176) Q Consensus 18 ~~~f~-~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~ 96 (176) .+.|. +.=||++++|++|+++++|++||||.+++|+|.+.|.+++++|+..+.++.+...++++++.+++.++..+++. T Consensus 48 kei~v~~~ef~~~lsflif~~~~~k~~g~~i~~~Ld~r~~~I~~~l~ea~~~~~ea~~~~~e~ekkl~~~~~~~~~i~~~ 127 (214) T 2cly_A 48 KEIYVITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDV 127 (214) T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHH T ss_pred CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 86048874999999999999999999889999999998888998999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999999999999999999999999999999998415999999999999942106 Q gi|254781086|r 97 VVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDA 175 (176) Q Consensus 97 a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i~~~~~~i~~ 175 (176) +++.+....+....++..++.....++...+....+.++..+++.+++.+...+.+ .+++...++++++.++++.. T Consensus 128 ake~~~~~~e~~~~e~~~~v~~~~k~~ld~~~~~e~~~~~~~q~~~v~~~~~~V~k---~i~~~~~k~~i~~~I~~Lk~ 203 (214) T 2cly_A 128 QRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQ---SISAQQEKETIAKCIADLKL 203 (214) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999998---76989899999999999998 No 2 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Probab=97.84 E-value=0.00014 Score=46.92 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=56.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY 139 (176) Q Consensus 81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~ 139 (176) ..|.+|+.++..|+++|+..+..++++.+.++..+.++++..++.+|+.++..+..+|+ T Consensus 2 e~L~eAk~eAa~Ii~qA~kra~qIveeAk~~A~~Ea~rIi~~A~~eIe~E~~~A~e~LR 60 (61) T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 77799999999999999977999999999999999999999899999999999999750 No 3 >2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T* Probab=97.75 E-value=0.0021 Score=39.57 Aligned_cols=104 Identities=5% Similarity=-0.070 Sum_probs=53.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHH Q ss_conf 9988598876889999999999999999999554089999999999999999---9999----99999999999999999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQE---KMDS----AKREVESMISSYEESLA 84 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~---~A~~----~~~eae~~~~~~e~~l~ 84 (176) ++-=+|++||..- -++|.|++++-.++..+..-+-+-.++..+.+.+.-+ ++.+ .........++.+..+. T Consensus 49 ei~v~~~ef~~~l--sflif~~~~~k~~g~~i~~~Ld~r~~~I~~~l~ea~~~~~ea~~~~~e~ekkl~~~~~~~~~i~~ 126 (214) T 2cly_A 49 EIYVITPETFSAI--STIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFD 126 (214) T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHH T ss_pred CCEEECHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6048874999999--99999999999988999999999888899899999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999 Q gi|254781086|r 85 IARAHAKEIIDKVVAAAEQNLEFQREVFEKDLL 117 (176) Q Consensus 85 eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~ 117 (176) .++..+...++.+..++.........+...... T Consensus 127 ~ake~~~~~~e~~~~e~~~~v~~~~k~~ld~~~ 159 (214) T 2cly_A 127 VQRNNIAMALEVTYRERLHRVYREVKNRLDYHI 159 (214) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 4 >1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1 Probab=97.21 E-value=0.0002 Score=45.85 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=26.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85988768899999999999999999995540899999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME 52 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~ 52 (176) .+|. |.++|. |.|++|+++.+||+||||.+.|+ T Consensus 2 niNa-Tl~gQ~----i~F~~fvwf~mk~vWPpi~~ame 34 (34) T 1b9u_A 2 NLNA-TILGQA----IAFVLFVLFCMKYVWPPLMAAIE 34 (34) T ss_dssp CCHH-HHHHHH----HHHHHHHHHHHHHTHHHHHHHHC T ss_pred CCHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 6118-999999----99999999999986238888619 No 5 >3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar ATPase/synthase, V-type ATPase/synthase, A-type ATPase/synthase; 3.10A {Thermus thermophilus HB8} Probab=96.93 E-value=0.019 Score=33.73 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=62.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999-99 Q gi|254781086|r 74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLV-RK 152 (176) Q Consensus 74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~-~k 152 (176) .+..+.+..+.+|+.++.++++++..++....++...+++.+.+..............+...-..+....+-...-+ .+ T Consensus 11 ea~~~~~~i~~eA~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~s~a~~~~r~~~l~~k~~li~~~~~~~~~~ 90 (188) T 3k5b_E 11 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA 90 (188) T ss_dssp HHHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHCCH-----HHHHHHHHHHHHHHH Q ss_conf 9841599-----999999999994210 Q gi|254781086|r 153 LGFSVSD-----ADVQKILDRKRDGID 174 (176) Q Consensus 153 l~~~~~~-----~~~~~~i~~~~~~i~ 174 (176) |. ++++ .....++.+.+..++ T Consensus 91 L~-~~~~~~~y~~~l~~li~ea~~~~~ 116 (188) T 3k5b_E 91 LE-ALPQKPEWPEVVRKLALEALEALP 116 (188) T ss_dssp HH-TSTTSTTHHHHHHHHHHHHHHSSS T ss_pred HH-HHCCCCHHHHHHHHHHHHHHHHCC T ss_conf 98-412340599999999999998549 No 6 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Probab=96.10 E-value=0.07 Score=30.20 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=50.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 71 EVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 71 eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) .......+....+..|+..+..|+++++..+....+..+..++.+++.....+..++ T Consensus 3 ~L~eAk~eAa~Ii~qA~kra~qIveeAk~~A~~Ea~rIi~~A~~eIe~E~~~A~e~L 59 (61) T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 779999999999999997799999999999999999999989999999999999975 No 7 >2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} Probab=95.71 E-value=0.00068 Score=42.62 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=45.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999 Q gi|254781086|r 49 SIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVV 98 (176) Q Consensus 49 ~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~ 98 (176) +.|++|+..|.++|..|++.+.+.+.+..+.+..|.+++.++..|+++|. T Consensus 2 ~AleeRqkkIAdGL~aAer~k~~Le~A~~~~~~~l~eAK~~A~~iI~qA~ 51 (53) T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN 51 (53) T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 37889998988679889977889999999999999999999999999745 No 8 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Probab=94.68 E-value=0.03 Score=32.45 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999 Q gi|254781086|r 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 76 ~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) ..+....+.+|+.++.+++++++.++.........++..+++.........+ T Consensus 16 ~~~a~~I~~eA~~~a~~i~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 67 (198) T 2dm9_A 16 ERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANA 67 (198) T ss_dssp ---------------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999999999999 No 9 >3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar ATPase/synthase, V-type ATPase/synthase, A-type ATPase/synthase; 3.10A {Thermus thermophilus HB8} Probab=94.54 E-value=0.23 Score=26.96 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999 Q gi|254781086|r 84 AIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID 128 (176) Q Consensus 84 ~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~ 128 (176) .+++.++..|+.+|..+++.+..+...++..........++.+.. T Consensus 10 ~ea~~~~~~i~~eA~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~ 54 (188) T 3k5b_E 10 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYR 54 (188) T ss_dssp HHHHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999999999 No 10 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Probab=91.35 E-value=0.039 Score=31.75 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=37.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 79 YEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKA 134 (176) Q Consensus 79 ~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a 134 (176) .+....+|+.++..|+++|+.+++++..+...++..+......++..++...+... T Consensus 8 ~~~I~~ea~~~a~~I~~eA~~~a~~i~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (198) T 2dm9_A 8 IQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRI 63 (198) T ss_dssp -------------------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999 No 11 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=88.38 E-value=1.2 Score=22.54 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999 Q gi|254781086|r 51 MEVRRNLISSDQEKMDSAKREVESMISSYEESLAI 85 (176) Q Consensus 51 l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~e 85 (176) +..|.+.|.++|++-.+...++........+.|.+ T Consensus 62 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (562) T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRG 96 (562) T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999999999999998888899999999999999 No 12 >1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 Probab=85.27 E-value=1.8 Score=21.49 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=37.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++.++........++.+.+...+ .+-++-...+.+.++....+...+++... T Consensus 101 rv~iP~lT~--E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~lKk~~----~iseD~~k~~~~~iq~ltd~~~~~id~~~ 174 (184) T 1ge9_A 101 RVTLPPLTE--ERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE----GISEDEKKRALERLQKLTDKYIDEINKLM 174 (184) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 046886449--999999999888699999999998799999888753----79878888899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 175 ~~KekE 180 (184) T 1ge9_A 175 EAKEKE 180 (184) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 13 >2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} Probab=84.14 E-value=2 Score=21.17 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999 Q gi|254781086|r 82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) .|..|..++.+++.+|+..-...+..++.++..+|+.-..+-+.+. T Consensus 10 qLL~AEk~A~eiV~eARk~k~~rLKqAK~EA~~EIe~yr~qkE~ef 55 (60) T 2k88_A 10 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKEL 55 (60) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999889999999999999998888999999999999999999998 No 14 >2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} Probab=83.54 E-value=2.1 Score=21.02 Aligned_cols=35 Identities=34% Similarity=0.320 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999 Q gi|254781086|r 80 EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEK 114 (176) Q Consensus 80 e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ 114 (176) .+.|.+|+.+++.|+.+|..+...+++.+..++++ T Consensus 13 sKIleDA~~~A~kI~~EAqkEk~~il~KAkeEAEk 47 (52) T 2kk7_A 13 SKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999888689999989998899999998999998 No 15 >1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 Probab=83.15 E-value=2.2 Score=20.92 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=37.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++..+........++.+.+...+... .+-++-...++..++........+++... T Consensus 99 rv~iP~lT~--E~R~~lvK~ak~~~E~~K~~iR~iR~~~~~~ikk~~k~~-~iseD~~~~~~~~iq~ltd~~~~~id~~~ 175 (185) T 1is1_A 99 RVPLPPLTE--ERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDK-EISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 215898889--999999999999989998899999999999998653138-99877888999999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 176 ~~KekE 181 (185) T 1is1_A 176 AAKEKE 181 (185) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 16 >1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* Probab=81.43 E-value=2.6 Score=20.52 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++.++........++.+.+.....+. .+-++-....+..++....+.-.+++... T Consensus 100 rv~iP~lT~--E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~ltd~~~~~id~~~ 176 (185) T 1eh1_A 100 YINIPPLTE--ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185) T ss_dssp EEECCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 616988889--999999999999999999999999999999986320448-99878898999999999999999999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781086|r 121 SNAQN 125 (176) Q Consensus 121 ~~a~~ 125 (176) ..-++ T Consensus 177 ~~Kek 181 (185) T 1eh1_A 177 EKKEQ 181 (185) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 17 >1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A Probab=81.14 E-value=2.6 Score=20.46 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=40.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++..+........++.+.+...+... .+-++-...++..+++........++... T Consensus 99 ri~iP~lT~--E~R~~l~K~~k~~~E~akv~iR~iR~~~~~~ik~~~k~~-~iseD~~k~~~~~iq~ltd~~i~~id~~~ 175 (185) T 1wqg_A 99 RVAVPQLTE--ERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEG-EAGEDEVGRAEKDLDKTTHQYVTQIDELV 175 (185) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 522898999--999999999999999999999999999999998740258-99877888899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 176 ~~Keke 181 (185) T 1wqg_A 176 KHKEGE 181 (185) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 18 >1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 Probab=80.23 E-value=2.8 Score=20.27 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++.++........++.+.+...+... .+-++-...++..++....+....++... T Consensus 99 rv~iP~~T~--E~R~~l~K~~k~~~E~aK~~iR~iR~~~~~~ik~~~k~~-~iseD~~k~~~~~iq~ltd~~~~~id~~~ 175 (185) T 1ise_A 99 RVPLPPLTE--ERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDK-EISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 625996679--999999999999999999999999999999998753248-98865888899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 176 ~~KekE 181 (185) T 1ise_A 176 ADKEAE 181 (185) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 19 >1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C Probab=78.94 E-value=3.1 Score=20.02 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=38.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..+++.+........++.+.+...+.. ..+-++-...+++.++....+....++... T Consensus 99 ~v~iP~~T~--E~R~elvK~~k~~~E~aK~~iR~iR~~~~~~ik~~~k~-~~iseD~~~~~~~~iq~ltd~~~~~id~~~ 175 (185) T 1dd5_A 99 RLVFPSPTT--EQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKE-GLIPEDDAKRLENEIQKLTDEFIEKLDEVF 175 (185) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 620897669--99999999999999999999999999999999987643-899865888999999999999999999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254781086|r 121 SNAQNEI 127 (176) Q Consensus 121 ~~a~~~I 127 (176) ...+++| T Consensus 176 ~~KekEi 182 (185) T 1dd5_A 176 EIKKEEI 182 (185) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999997 No 20 >1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1 Probab=76.50 E-value=3.6 Score=19.59 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 089999999999999999999999999999999 Q gi|254781086|r 46 RLSSIMEVRRNLISSDQEKMDSAKREVESMISS 78 (176) Q Consensus 46 pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~ 78 (176) +|...|++-+..+...+++.++...+.++...+ T Consensus 53 r~q~~ie~~~~~~~~~i~~l~~~l~~~q~~~~~ 85 (390) T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKD 85 (390) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999999999999999999999999999 No 21 >2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} Probab=75.98 E-value=1.5 Score=21.98 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999 Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRF 42 (176) Q Consensus 23 ~q~fw~~I~F~il~~il~~~ 42 (176) ++++.+++.|++|||++.+. T Consensus 4 ~~l~~~v~~f~ifYFliIRP 23 (37) T 2rdd_B 4 SLILMLVVFGLIFYFMILRP 23 (37) T ss_dssp HHHHHHHHHHHHHHHHTHHH T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 89999999999999999570 No 22 >2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1 Probab=75.43 E-value=3.8 Score=19.50 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=19.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99885988768899999999999999999995540899 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSS 49 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~ 49 (176) |-+.++.-.|++- +|+|+|+.+++..++..|+.+ T Consensus 86 ~~~~i~yG~Fl~a----iInFlIiA~vvyFlivk~~nk 119 (174) T 2oar_A 86 GGQTIDLNVLLSA----AINFFLIAFAVYFLVVLPYNT 119 (174) T ss_dssp SCEEECHHHHHHH----HHHHHHHHHHHHHHTHHHHHH T ss_pred CCEEEEHHHHHHH----HHHHHHHHHHHHHHHHHHHHH T ss_conf 8704539899999----999999999999999999998 No 23 >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Probab=65.07 E-value=6.5 Score=18.01 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999 Q gi|254781086|r 49 SIMEVRRNLISSDQEKMDS 67 (176) Q Consensus 49 ~~l~~R~~~I~~~l~~A~~ 67 (176) ..|.+-...+++.+++-+. T Consensus 84 d~L~kqe~~lkkqIeeLeq 102 (461) T 3ghg_B 84 EALLQQERPIRNSVDELNN 102 (461) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999878999999999 No 24 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Probab=63.22 E-value=7.1 Score=17.80 Aligned_cols=42 Identities=2% Similarity=0.064 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999999999999999999999999999 Q gi|254781086|r 47 LSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARA 88 (176) Q Consensus 47 i~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ 88 (176) |...|.+-...|++.+++-+...++.++...+.+..+...+. T Consensus 87 Lqd~L~kQe~~lkeqi~eLeq~ieqLqq~~~~lqq~i~~L~e 128 (464) T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDN 128 (464) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999999 No 25 >3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Probab=52.71 E-value=11 Score=16.70 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 50 IMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 50 ~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) .-+.|++.+..--..++.++........++...+...... ..+-++-...++..+++.......+++.....-+++| T Consensus 44 T~E~R~elvK~ak~~~E~aKvsIRniRrd~~~~iKk~~k~-k~iseDd~k~~e~eiQklTdk~i~~id~l~~~KEkEI 120 (123) T 3lhp_S 44 TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKD-KEINWFDISQSLWDVQKLTDAAIKKIEAALADMEAWL 120 (123) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9899999999999999999999999999999999986523-8999899988999999999999999999999999998 No 26 >3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D* Probab=52.65 E-value=11 Score=16.69 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=9.6 Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHH Q ss_conf 999999999---99999999554089 Q gi|254781086|r 26 FWLAIIFGI---FYWVTHRFILPRLS 48 (176) Q Consensus 26 fw~~I~F~i---l~~il~~~~~~pi~ 48 (176) +|+++.|+| |.++++|-+|+.|+ T Consensus 210 ~~Vl~FL~i~~vl~yllkk~~WkdvK 235 (248) T 3cx5_D 210 LKTVIILSSLYLLSIWVKKFKWAGIK 235 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999999856523 No 27 >2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B* Probab=51.62 E-value=8.9 Score=17.18 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999995540899999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVRR 55 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~ 55 (176) .+.|-++.|+++++++.+++...+=+-++.|+ T Consensus 228 ~lG~~VllfL~vl~~l~y~lkr~~WkdIK~~~ 259 (269) T 2qjy_B 228 QAGFTAVMFLTVLSVLLYLTNKRLWAGVKGKK 259 (269) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 98999999999999999999999857602240 No 28 >1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 1bcc_D* 2bcc_D* 3bcc_D* 3l70_D* ... Probab=47.47 E-value=12 Score=16.40 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=20.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999554089999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEVR 54 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~R 54 (176) .+-|.+|.|+++++++.+++.+.+=+-++.| T Consensus 203 ~lG~~Vl~FL~i~~vl~Yllkke~WkdvK~~ 233 (241) T 1pp9_D 203 RMGLKMLLMMGLLLPLVYAMKRHKWSVLKSR 233 (241) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9799999999999999999999986875265 No 29 >1dkx_A Substrate binding domain of DNAK; DNAK, heat shock protein 70 kDa (HSP70), complex (molecular chaperone/peptide); 2.00A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 PDB: 3dpo_A* 3dpp_A* 3dpq_A* 1dkz_A 1dky_A 1bpr_A 2bpr_A 1dg4_A Probab=46.53 E-value=13 Score=16.10 Aligned_cols=67 Identities=7% Similarity=0.050 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 56 ~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) +.|+..+.+|+....+- +......+++.++...+.......+...+.....-...+...+...+..+ T Consensus 122 eEIekmi~dae~~~~eD-----~~~re~ie~rn~~e~~i~~~~~~lee~~~k~~~~~k~~I~~~i~~l~~~L 188 (219) T 1dkx_A 122 DEIQKMVRDAEANAEAD-----RKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETAL 188 (219) T ss_dssp HHHHHHHHHHHHTHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999899766406-----88999999999999999999975776442210568999999999999998 No 30 >1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A Probab=44.08 E-value=9.9 Score=16.90 Aligned_cols=44 Identities=5% Similarity=0.059 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999 Q gi|254781086|r 109 REVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK 152 (176) Q Consensus 109 ~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k 152 (176) ......++.......+.++...+......+...+......+++. T Consensus 69 ~~~~~~e~q~~~~~~~~~l~~~~~~~~~~i~~~i~~~i~~iA~~ 112 (143) T 1u2m_A 69 VMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143) T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999998 No 31 >1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* 3ag3_D* ... Probab=43.18 E-value=4.1 Score=19.27 Aligned_cols=30 Identities=3% Similarity=0.131 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999955408999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) -+|+++..-++++++++.|++||+-..|++ T Consensus 84 ~~~~~i~~s~~i~~~~r~~v~pp~P~T~~~ 113 (147) T 1v54_D 84 AAMFFIGFTALLLIWEKHYVYGPIPHTFEE 113 (147) T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCGGGSH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 999999999999999999726999988899 No 32 >2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle state; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1 Probab=42.10 E-value=12 Score=16.45 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=10.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999995540899999999999999 Q gi|254781086|r 38 VTHRFILPRLSSIMEVRRNLISSD 61 (176) Q Consensus 38 il~~~~~~pi~~~l~~R~~~I~~~ 61 (176) ++.+.+..||.+..+.=+.-=.++ T Consensus 78 ~i~r~i~~Pl~~l~~~~~~i~~Gd 101 (163) T 2f95_B 78 TLGGDTAASLSTLAAKASRMGDGD 101 (163) T ss_dssp ------------------------ T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999999999999872698 No 33 >2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H* Probab=39.96 E-value=17 Score=15.47 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=14.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~ 41 (176) .+|.....--+||+ |+|.+|++.|.+ T Consensus 9 ~~D~Aql~l~~FW~-~FFa~Li~YL~r 34 (258) T 2wjn_H 9 HLDIAQLVWYAQWL-VIWTVVLLYLRR 34 (258) T ss_dssp TCBHHHHHHHHHHH-HHHHHHHHTHHH T ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHC T ss_conf 02199999999999-999999998621 No 34 >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Probab=39.45 E-value=17 Score=15.42 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|254781086|r 117 LHKLSNAQNEIDDMQKKASQEVYS 140 (176) Q Consensus 117 ~~~~~~a~~~I~~~k~~a~~ei~~ 140 (176) .-.+..|+..+......-+.+|+. T Consensus 59 ~P~l~~A~~al~~l~k~di~Elks 82 (536) T 3err_A 59 EPAVIEAQNAVKSIKKQHLVEVRS 82 (536) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCHHHHHHHHC T ss_conf 599999999996499978999972 No 35 >3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Probab=38.66 E-value=18 Score=15.35 Aligned_cols=21 Identities=29% Similarity=0.611 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8876889999999999999999 Q gi|254781086|r 18 TSTFLSQFFWLAIIFGIFYWVT 39 (176) Q Consensus 18 ~~~f~~q~fw~~I~F~il~~il 39 (176) |..|. -+||..|.|.++|+++ T Consensus 55 P~ww~-~~f~~tiv~~~~Y~~~ 75 (311) T 3mk7_C 55 PRWWF-LLFIGTLVFGILYLVL 75 (311) T ss_dssp CHHHH-HHHHHHHHHHHHHHHH T ss_pred CHHHH-HHHHHHHHHHHHHHHH T ss_conf 78999-9999999999999999 No 36 >1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A Probab=34.33 E-value=21 Score=14.92 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=5.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q gi|254781086|r 100 AAEQNLEFQREVFEKD 115 (176) Q Consensus 100 ~a~~~~e~~~~~a~~e 115 (176) ......+..+.++... T Consensus 92 ~l~~~~e~lr~~l~~~ 107 (165) T 1gs9_A 92 RLSKELQAAQARLGAD 107 (165) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9889999999999878 No 37 >1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A Probab=33.94 E-value=21 Score=14.88 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999 Q gi|254781086|r 51 MEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEI 93 (176) Q Consensus 51 l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~i 93 (176) +..|.+.++..|.+.++...+......+....+.....+.... T Consensus 63 l~~ri~~Lq~~L~e~q~~~k~~~~~i~~l~~~lk~~~~~~~~~ 105 (491) T 1m1j_A 63 YSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQL 105 (491) T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999 No 38 >2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans} Probab=28.66 E-value=16 Score=15.65 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=6.2 Q ss_pred CCCCCCCCCCCCC Q ss_conf 6453346899885 Q gi|254781086|r 4 SSSSDFSSRFPPF 16 (176) Q Consensus 4 ~~~~~~~~gmpql 16 (176) +|+.....|.|.+ T Consensus 22 ~CHg~~~~G~p~~ 34 (87) T 2zon_G 22 VCHASGVANAPKL 34 (87) T ss_dssp HHHTTTGGGCCCT T ss_pred HHCCCCCCCCCCC T ss_conf 8715777899888 No 39 >1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1 Probab=27.21 E-value=27 Score=14.18 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=13.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~ 41 (176) -||.....--+|| |+|..|++.|.+ T Consensus 8 y~DvAql~ly~Fw--~FFa~Lv~YL~r 32 (259) T 1eys_H 8 YIDAAQITIWAFW--LFFFGLIIYLRR 32 (259) T ss_dssp CCCHHHHHHHHHH--HHHHHHHHHHHH T ss_pred EEEHHHHHHHHHH--HHHHHHHHHHHC T ss_conf 1309999999999--999999998612 No 40 >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Probab=27.12 E-value=27 Score=14.17 Aligned_cols=24 Identities=8% Similarity=0.089 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|254781086|r 62 QEKMDSAKREVESMISSYEESLAI 85 (176) Q Consensus 62 l~~A~~~~~eae~~~~~~e~~l~e 85 (176) +..-...+..++....+.+..+.+ T Consensus 35 L~~e~~~r~~aE~~~~~l~~ElEe 58 (97) T 2eqb_B 35 IAKENELRTKAEEEADKLNKEVED 58 (97) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999998889989999 No 41 >3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens} Probab=25.96 E-value=29 Score=14.04 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=14.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 46899885988768899999999999 Q gi|254781086|r 9 FSSRFPPFDTSTFLSQFFWLAIIFGI 34 (176) Q Consensus 9 ~~~gmpqld~~~f~~q~fw~~I~F~i 34 (176) ..++||.+.......+=.|-++.|++ T Consensus 56 g~~~MP~~~~~~Lsd~ei~~v~aYv~ 81 (85) T 3cu4_A 56 PGPGMPAFGEAMIPPADALKIGEYVV 81 (85) T ss_dssp CCTTSCCCCTTTSCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 54789865678989999999999998 No 42 >1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ... Probab=24.58 E-value=31 Score=13.88 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=11.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 859887688999999999999999999 Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHR 41 (176) Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~ 41 (176) .||.....--+|| |+|..|++.|.+ T Consensus 9 ~~D~Aq~~l~~Fw--~FFa~Li~YL~r 33 (260) T 1rzh_H 9 NFDLASLAIYSFW--IFLAGLIYYLQT 33 (260) T ss_dssp --CHHHHHHHHHH--HHHHHHHHHHHH T ss_pred EEEHHHHHHHHHH--HHHHHHHHHHHC T ss_conf 4249999999999--999999998712 No 43 >1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C* Probab=22.58 E-value=32 Score=13.78 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=9.1 Q ss_pred CCCCCCCCCCCCCCHHHH Q ss_conf 645334689988598876 Q gi|254781086|r 4 SSSSDFSSRFPPFDTSTF 21 (176) Q Consensus 4 ~~~~~~~~gmpqld~~~f 21 (176) +|+....+|.|.|....+ T Consensus 17 ~CHg~~g~g~p~l~~~~~ 34 (80) T 1wve_C 17 HCHKPEVGVGPVLEGRGL 34 (80) T ss_dssp HHHSTTTCSSCCCTTSCC T ss_pred HHCCCCCCCCCCCCCCCC T ss_conf 866666666644457788 Done!