Query gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62] Match_columns 176 No_of_seqs 127 out of 1799 Neff 8.1 Searched_HMMs 13730 Date Wed Jun 1 11:36:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781086.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 97.9 6.1E-05 4.4E-09 47.6 9.7 59 81-139 2-60 (61) 2 d1l2pa_ f.23.21.1 (A:) F1F0 AT 96.2 0.034 2.4E-06 30.7 10.0 57 71-127 3-59 (61) 3 d1ge9a_ d.67.3.1 (A:) Ribosome 86.2 0.93 6.8E-05 21.8 8.0 80 41-126 101-180 (184) 4 d1is1a_ d.67.3.1 (A:) Ribosome 84.9 1.1 7.8E-05 21.4 8.6 83 41-126 99-181 (185) 5 d1eh1a_ d.67.3.1 (A:) Ribosome 84.9 1.1 7.8E-05 21.4 8.7 83 41-126 100-182 (185) 6 d1dd5a_ d.67.3.1 (A:) Ribosome 79.6 1.7 0.00012 20.1 9.1 83 41-126 98-180 (184) 7 d1wqga1 d.67.3.1 (A:2-184) Rib 79.2 1.7 0.00013 20.1 8.6 84 41-127 98-181 (183) 8 d1ek8a_ d.67.3.1 (A:) Ribosome 78.9 1.8 0.00013 20.0 8.9 83 41-126 99-181 (185) 9 d1gs9a_ a.24.1.1 (A:) Apolipop 59.4 4.8 0.00035 17.4 10.6 18 99-116 70-87 (144) 10 d2oara1 f.16.1.1 (A:10-118) Ga 46.6 7.7 0.00056 16.1 4.3 35 12-50 54-88 (109) 11 d1u00a1 a.8.4.1 (A:504-615) Ch 44.6 8.2 0.0006 15.9 11.3 68 56-128 4-71 (112) 12 d1u2ma_ f.48.1.1 (A:) Periplas 37.6 11 0.00077 15.2 3.7 45 108-152 68-112 (143) 13 d1v54d_ f.23.1.1 (D:) Mitochon 36.7 6.7 0.00049 16.5 1.5 30 24-53 81-110 (144) 14 d1wvec1 a.3.1.1 (C:602-675) p- 31.8 9.9 0.00072 15.4 1.7 15 4-18 16-30 (74) 15 d1dkza1 a.8.4.1 (A:507-603) Dn 23.6 18 0.0013 13.8 9.2 43 56-103 4-46 (97) 16 d2iuba2 f.17.3.1 (A:286-349) M 22.9 17 0.0013 13.9 1.7 28 12-43 32-59 (64) 17 d2fiya1 e.59.1.1 (A:19-308) Fd 22.9 19 0.0014 13.7 2.0 22 9-30 63-84 (290) 18 d1ppjd2 f.23.11.1 (D:196-241) 22.1 20 0.0014 13.6 4.0 25 24-48 12-36 (46) No 1 >d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]} Probab=97.89 E-value=6.1e-05 Score=47.62 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=56.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY 139 (176) Q Consensus 81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~ 139 (176) ..|.+|+.++..|+++|+..+..++++.+.++..+.++++..++.+|+.++..+..+|+ T Consensus 2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLR 60 (61) T d1l2pa_ 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 77799999999999999988999999999999999999999899999999999999750 No 2 >d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]} Probab=96.19 E-value=0.034 Score=30.68 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=50.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 71 EVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176) Q Consensus 71 eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176) .......+....+..|+..+..|+++++..+....+..+..++.+++..+..+...+ T Consensus 3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61) T d1l2pa_ 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 779999999999999998899999999999999999999989999999999999975 No 3 >d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} Probab=86.24 E-value=0.93 Score=21.78 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=38.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++.++........++.+.+...+ .+-++-...+++.+++.......+++... T Consensus 101 ri~iP~lT~--E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~k----~iseD~~k~~~~~iqkltd~~~~~id~~~ 174 (184) T d1ge9a_ 101 RVTLPPLTE--ERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE----GISEDEKKRALERLQKLTDKYIDEINKLM 174 (184) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 036775549--999999999999989999999997478999988743----79877888899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 175 ~~Keke 180 (184) T d1ge9a_ 175 EAKEKE 180 (184) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 4 >d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Probab=84.92 E-value=1.1 Score=21.38 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=37.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++..+........+..+.+...+... .+-++-...+++.++....+....++... T Consensus 99 ri~iP~lT~--E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~-~iseD~~k~~~~~iq~ltd~~~~~id~~~ 175 (185) T d1is1a_ 99 RVPLPPLTE--ERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDK-EISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 504887769--999999999999899999989999999999998632348-99876888999999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 176 ~~KekE 181 (185) T d1is1a_ 176 AAKEKE 181 (185) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 5 >d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Probab=84.89 E-value=1.1 Score=21.38 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++.++........++...+.....+. .+-++-...++..+++...+...+++... T Consensus 100 rv~iP~lT~--E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~ltd~~~~~id~~~ 176 (185) T d1eh1a_ 100 YINIPPLTE--ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185) T ss_dssp EEECCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 206787769--999999999999999999999999999999987310358-98877898899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 177 ~~KekE 182 (185) T d1eh1a_ 177 EKKEQE 182 (185) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 6 >d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Probab=79.59 E-value=1.7 Score=20.15 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=39.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++.++........++.+.+...+.. ..+-++-...+++.+++...+....++... T Consensus 98 ri~iP~lT~--E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~-~~iseD~~k~~~~~iq~ltd~~~~~id~~~ 174 (184) T d1dd5a_ 98 RLVFPSPTT--EQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKE-GLIPEDDAKRLENEIQKLTDEFIEKLDEVF 174 (184) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 112464139--99999999999999999999999999999998875304-898865888899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ...+++ T Consensus 175 ~~Keke 180 (184) T d1dd5a_ 175 EIKKEE 180 (184) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 7 >d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Probab=79.24 E-value=1.7 Score=20.08 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=41.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||++. +.|++.+..--..++..+........++...+...+... .+-++-...+++.++....+...+++... T Consensus 98 rv~iP~lT~--E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~-~iseD~~~~~~~~iq~ltd~~~~~id~~~ 174 (183) T d1wqga1 98 RVAVPQLTE--ERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEG-EAGEDEVGRAEKDLDKTTHQYVTQIDELV 174 (183) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 544366889--999999999999999999999999999999998742368-99866888899999999999999999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254781086|r 121 SNAQNEI 127 (176) Q Consensus 121 ~~a~~~I 127 (176) ..-+++| T Consensus 175 ~~KekEi 181 (183) T d1wqga1 175 KHKEGEL 181 (183) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999986 No 8 >d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} Probab=78.87 E-value=1.8 Score=20.01 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=37.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176) Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176) +..+||+.. +.|++.+..--..++..+........++.+.+...+.. ..+-++-...+++.++....+...+++... T Consensus 99 ri~iP~lT~--E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~-~~iseD~~k~~~~~iq~ltd~~~~~id~~~ 175 (185) T d1ek8a_ 99 RVPLPPLTE--ERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKD-KEISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185) T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 005688878--99999999999999999999999999999998864055-899865888899999999999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781086|r 121 SNAQNE 126 (176) Q Consensus 121 ~~a~~~ 126 (176) ..-+++ T Consensus 176 ~~Keke 181 (185) T d1ek8a_ 176 ADKEAE 181 (185) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 9 >d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]} Probab=59.42 E-value=4.8 Score=17.38 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=5.6 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999 Q gi|254781086|r 99 AAAEQNLEFQREVFEKDL 116 (176) Q Consensus 99 ~~a~~~~e~~~~~a~~ei 116 (176) .......+..+..+..++ T Consensus 70 ~~l~~~~e~lr~~l~~~l 87 (144) T d1gs9a_ 70 ARLSKELQAAQARLGADM 87 (144) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 888865999999998789 No 10 >d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]} Probab=46.62 E-value=7.7 Score=16.11 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=19.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998859887688999999999999999999955408999 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI 50 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~ 50 (176) |.+.++.-.|++.+ |+|++..+++...+.+|+.+. T Consensus 54 ~~~~i~~G~fi~a~----InFlIiA~vv~F~vvk~~n~~ 88 (109) T d2oara1 54 GGQTIDLNVLLSAA----INFFLIAFAVYFLVVLPYNTL 88 (109) T ss_dssp SCEEECHHHHHHHH----HHHHHHHHHHHHHTHHHHHHH T ss_pred CCCEEEHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH T ss_conf 87234388999999----999999999999999999987 No 11 >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Probab=44.60 E-value=8.2 Score=15.92 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781086|r 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID 128 (176) Q Consensus 56 ~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~ 128 (176) +.|...+.+|.....+ -.....+-+++.++..++..............-..-...+...+...+.-|. T Consensus 4 eEIerMi~eA~~~a~e-----D~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~ 71 (112) T d1u00a1 4 SEIASMIKDSMSYAEQ-----DVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ 71 (112) T ss_dssp HHHHHHHHHHHHTHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999998988-----8999999999999999999999999984715889999999999999999887 No 12 >d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]} Probab=37.61 E-value=11 Score=15.25 Aligned_cols=45 Identities=4% Similarity=0.065 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999 Q gi|254781086|r 108 QREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK 152 (176) Q Consensus 108 ~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k 152 (176) .......++......++.++...+..+...+...+..+...++++ T Consensus 68 ~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~~i~~ia~~ 112 (143) T d1u2ma_ 68 DVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143) T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999999998 No 13 >d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]} Probab=36.65 E-value=6.7 Score=16.49 Aligned_cols=30 Identities=3% Similarity=0.131 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999955408999999 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176) -+|+++..-++++++++.|++||+-..|++ T Consensus 81 ~~~~~i~~s~~i~~~~r~~v~p~~P~T~~~ 110 (144) T d1v54d_ 81 AAMFFIGFTALLLIWEKHYVYGPIPHTFEE 110 (144) T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCGGGSH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 999999999999999999707999988899 No 14 >d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]} Probab=31.83 E-value=9.9 Score=15.43 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=6.0 Q ss_pred CCCCCCCCCCCCCCH Q ss_conf 645334689988598 Q gi|254781086|r 4 SSSSDFSSRFPPFDT 18 (176) Q Consensus 4 ~~~~~~~~gmpqld~ 18 (176) +|+....+|.|.|.. T Consensus 16 ~CHg~~g~~~p~l~~ 30 (74) T d1wvec1 16 HCHKPEVGVGPVLEG 30 (74) T ss_dssp HHHSTTTCSSCCCTT T ss_pred HHHCCCCCCHHHCCC T ss_conf 871155730242134 No 15 >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Probab=23.56 E-value=18 Score=13.76 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999999999 Q gi|254781086|r 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ 103 (176) Q Consensus 56 ~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~ 103 (176) +.|...+.+|+....+= .-...+-+++.++..++-........ T Consensus 4 ~EIerMi~eAe~~a~eD-----~~~r~~ie~rn~ae~~i~~~e~~l~e 46 (97) T d1dkza1 4 DEIQKMVRDAEANAEAD-----RKFEELVQTRNQGDHLLHSTRKQVEE 46 (97) T ss_dssp HHHHHHHHHHHHTHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999849989-----99999999898999999999999997 No 16 >d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Probab=22.95 E-value=17 Score=13.91 Aligned_cols=28 Identities=7% Similarity=-0.148 Sum_probs=11.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99885988768899999999999999999995 Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFI 43 (176) Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~ 43 (176) +||+.+..+ -||.++...++..++..++ T Consensus 32 ~~P~~~~~~----~~~~~~~~~~~~~~~~~~~ 59 (64) T d2iuba2 32 YMPELRWKW----GYPVVLAVMGVIAVIMVVY 59 (64) T ss_dssp --------------CHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCH----HHHHHHHHHHHHHHHHHHH T ss_conf 898878627----9999999999999999999 No 17 >d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Probab=22.89 E-value=19 Score=13.67 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHH Q ss_conf 4689988598876889999999 Q gi|254781086|r 9 FSSRFPPFDTSTFLSQFFWLAI 30 (176) Q Consensus 9 ~~~gmpqld~~~f~~q~fw~~I 30 (176) ...|||+|+.+.|...-.|..+ T Consensus 63 ~~~g~PpL~~~~~~~d~~w~~~ 84 (290) T d2fiya1 63 REHGMPPLAYDLLVREGAWLPW 84 (290) T ss_dssp HHTTCCTTCHHHHHHHCTTHHH T ss_pred HHCCCCCCCCCCCCCCHHHHHH T ss_conf 7558997773324568899999 No 18 >d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]} Probab=22.12 E-value=20 Score=13.58 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999554089 Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLS 48 (176) Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~ 48 (176) .++-+++.|.++.+...++.|-+|. T Consensus 12 Kv~~~l~~l~~l~yy~KR~~Ws~lK 36 (46) T d1ppjd2 12 KMLLMMGLLLPLVYAMKRHKWSVLK 36 (46) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999998623013 Done!