Query gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 127 out of 1799
Neff 8.1
Searched_HMMs 13730
Date Wed Jun 1 11:36:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781086.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 97.9 6.1E-05 4.4E-09 47.6 9.7 59 81-139 2-60 (61)
2 d1l2pa_ f.23.21.1 (A:) F1F0 AT 96.2 0.034 2.4E-06 30.7 10.0 57 71-127 3-59 (61)
3 d1ge9a_ d.67.3.1 (A:) Ribosome 86.2 0.93 6.8E-05 21.8 8.0 80 41-126 101-180 (184)
4 d1is1a_ d.67.3.1 (A:) Ribosome 84.9 1.1 7.8E-05 21.4 8.6 83 41-126 99-181 (185)
5 d1eh1a_ d.67.3.1 (A:) Ribosome 84.9 1.1 7.8E-05 21.4 8.7 83 41-126 100-182 (185)
6 d1dd5a_ d.67.3.1 (A:) Ribosome 79.6 1.7 0.00012 20.1 9.1 83 41-126 98-180 (184)
7 d1wqga1 d.67.3.1 (A:2-184) Rib 79.2 1.7 0.00013 20.1 8.6 84 41-127 98-181 (183)
8 d1ek8a_ d.67.3.1 (A:) Ribosome 78.9 1.8 0.00013 20.0 8.9 83 41-126 99-181 (185)
9 d1gs9a_ a.24.1.1 (A:) Apolipop 59.4 4.8 0.00035 17.4 10.6 18 99-116 70-87 (144)
10 d2oara1 f.16.1.1 (A:10-118) Ga 46.6 7.7 0.00056 16.1 4.3 35 12-50 54-88 (109)
11 d1u00a1 a.8.4.1 (A:504-615) Ch 44.6 8.2 0.0006 15.9 11.3 68 56-128 4-71 (112)
12 d1u2ma_ f.48.1.1 (A:) Periplas 37.6 11 0.00077 15.2 3.7 45 108-152 68-112 (143)
13 d1v54d_ f.23.1.1 (D:) Mitochon 36.7 6.7 0.00049 16.5 1.5 30 24-53 81-110 (144)
14 d1wvec1 a.3.1.1 (C:602-675) p- 31.8 9.9 0.00072 15.4 1.7 15 4-18 16-30 (74)
15 d1dkza1 a.8.4.1 (A:507-603) Dn 23.6 18 0.0013 13.8 9.2 43 56-103 4-46 (97)
16 d2iuba2 f.17.3.1 (A:286-349) M 22.9 17 0.0013 13.9 1.7 28 12-43 32-59 (64)
17 d2fiya1 e.59.1.1 (A:19-308) Fd 22.9 19 0.0014 13.7 2.0 22 9-30 63-84 (290)
18 d1ppjd2 f.23.11.1 (D:196-241) 22.1 20 0.0014 13.6 4.0 25 24-48 12-36 (46)
No 1
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=97.89 E-value=6.1e-05 Score=47.62 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY 139 (176)
Q Consensus 81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~ 139 (176)
..|.+|+.++..|+++|+..+..++++.+.++..+.++++..++.+|+.++..+..+|+
T Consensus 2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLR 60 (61)
T d1l2pa_ 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77799999999999999988999999999999999999999899999999999999750
No 2
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=96.19 E-value=0.034 Score=30.68 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 71 EVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176)
Q Consensus 71 eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176)
.......+....+..|+..+..|+++++..+....+..+..++.+++..+..+...+
T Consensus 3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 779999999999999998899999999999999999999989999999999999975
No 3
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=86.24 E-value=0.93 Score=21.78 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176)
Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176)
+..+||++. +.|++.+..--..++.++........++.+.+...+ .+-++-...+++.+++.......+++...
T Consensus 101 ri~iP~lT~--E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~k----~iseD~~k~~~~~iqkltd~~~~~id~~~ 174 (184)
T d1ge9a_ 101 RVTLPPLTE--ERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE----GISEDEKKRALERLQKLTDKYIDEINKLM 174 (184)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 036775549--999999999999989999999997478999988743----79877888899999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781086|r 121 SNAQNE 126 (176)
Q Consensus 121 ~~a~~~ 126 (176)
...+++
T Consensus 175 ~~Keke 180 (184)
T d1ge9a_ 175 EAKEKE 180 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
No 4
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=84.92 E-value=1.1 Score=21.38 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176)
Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176)
+..+||++. +.|++.+..--..++..+........+..+.+...+... .+-++-...+++.++....+....++...
T Consensus 99 ri~iP~lT~--E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~-~iseD~~k~~~~~iq~ltd~~~~~id~~~ 175 (185)
T d1is1a_ 99 RVPLPPLTE--ERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDK-EISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 504887769--999999999999899999989999999999998632348-99876888999999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781086|r 121 SNAQNE 126 (176)
Q Consensus 121 ~~a~~~ 126 (176)
...+++
T Consensus 176 ~~KekE 181 (185)
T d1is1a_ 176 AAKEKE 181 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
No 5
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=84.89 E-value=1.1 Score=21.38 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176)
Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176)
+..+||++. +.|++.+..--..++.++........++...+.....+. .+-++-...++..+++...+...+++...
T Consensus 100 rv~iP~lT~--E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~ltd~~~~~id~~~ 176 (185)
T d1eh1a_ 100 YINIPPLTE--ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp EEECCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 206787769--999999999999999999999999999999987310358-98877898899999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781086|r 121 SNAQNE 126 (176)
Q Consensus 121 ~~a~~~ 126 (176)
...+++
T Consensus 177 ~~KekE 182 (185)
T d1eh1a_ 177 EKKEQE 182 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
No 6
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=79.59 E-value=1.7 Score=20.15 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176)
Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176)
+..+||++. +.|++.+..--..++.++........++.+.+...+.. ..+-++-...+++.+++...+....++...
T Consensus 98 ri~iP~lT~--E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~-~~iseD~~k~~~~~iq~ltd~~~~~id~~~ 174 (184)
T d1dd5a_ 98 RLVFPSPTT--EQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKE-GLIPEDDAKRLENEIQKLTDEFIEKLDEVF 174 (184)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 112464139--99999999999999999999999999999998875304-898865888899999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781086|r 121 SNAQNE 126 (176)
Q Consensus 121 ~~a~~~ 126 (176)
...+++
T Consensus 175 ~~Keke 180 (184)
T d1dd5a_ 175 EIKKEE 180 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 7
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=79.24 E-value=1.7 Score=20.08 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176)
Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176)
+..+||++. +.|++.+..--..++..+........++...+...+... .+-++-...+++.++....+...+++...
T Consensus 98 rv~iP~lT~--E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~-~iseD~~~~~~~~iq~ltd~~~~~id~~~ 174 (183)
T d1wqga1 98 RVAVPQLTE--ERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEG-EAGEDEVGRAEKDLDKTTHQYVTQIDELV 174 (183)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 544366889--999999999999999999999999999999998742368-99866888899999999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781086|r 121 SNAQNEI 127 (176)
Q Consensus 121 ~~a~~~I 127 (176)
..-+++|
T Consensus 175 ~~KekEi 181 (183)
T d1wqga1 175 KHKEGEL 181 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999986
No 8
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=78.87 E-value=1.8 Score=20.01 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176)
Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176)
+..+||+.. +.|++.+..--..++..+........++.+.+...+.. ..+-++-...+++.++....+...+++...
T Consensus 99 ri~iP~lT~--E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~-~~iseD~~k~~~~~iq~ltd~~~~~id~~~ 175 (185)
T d1ek8a_ 99 RVPLPPLTE--ERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKD-KEISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 005688878--99999999999999999999999999999998864055-899865888899999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781086|r 121 SNAQNE 126 (176)
Q Consensus 121 ~~a~~~ 126 (176)
..-+++
T Consensus 176 ~~Keke 181 (185)
T d1ek8a_ 176 ADKEAE 181 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 9
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=59.42 E-value=4.8 Score=17.38 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|254781086|r 99 AAAEQNLEFQREVFEKDL 116 (176)
Q Consensus 99 ~~a~~~~e~~~~~a~~ei 116 (176)
.......+..+..+..++
T Consensus 70 ~~l~~~~e~lr~~l~~~l 87 (144)
T d1gs9a_ 70 ARLSKELQAAQARLGADM 87 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 888865999999998789
No 10
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=46.62 E-value=7.7 Score=16.11 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998859887688999999999999999999955408999
Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSI 50 (176)
Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~ 50 (176)
|.+.++.-.|++.+ |+|++..+++...+.+|+.+.
T Consensus 54 ~~~~i~~G~fi~a~----InFlIiA~vv~F~vvk~~n~~ 88 (109)
T d2oara1 54 GGQTIDLNVLLSAA----INFFLIAFAVYFLVVLPYNTL 88 (109)
T ss_dssp SCEEECHHHHHHHH----HHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCEEEHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 87234388999999----999999999999999999987
No 11
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=44.60 E-value=8.2 Score=15.92 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEID 128 (176)
Q Consensus 56 ~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~ 128 (176)
+.|...+.+|.....+ -.....+-+++.++..++..............-..-...+...+...+.-|.
T Consensus 4 eEIerMi~eA~~~a~e-----D~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~ 71 (112)
T d1u00a1 4 SEIASMIKDSMSYAEQ-----DVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ 71 (112)
T ss_dssp HHHHHHHHHHHHTHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998988-----8999999999999999999999999984715889999999999999999887
No 12
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]}
Probab=37.61 E-value=11 Score=15.25 Aligned_cols=45 Identities=4% Similarity=0.065 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999
Q gi|254781086|r 108 QREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRK 152 (176)
Q Consensus 108 ~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~k 152 (176)
.......++......++.++...+..+...+...+..+...++++
T Consensus 68 ~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~~i~~ia~~ 112 (143)
T d1u2ma_ 68 DVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999998
No 13
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=36.65 E-value=6.7 Score=16.49 Aligned_cols=30 Identities=3% Similarity=0.131 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999955408999999
Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLSSIMEV 53 (176)
Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~~~l~~ 53 (176)
-+|+++..-++++++++.|++||+-..|++
T Consensus 81 ~~~~~i~~s~~i~~~~r~~v~p~~P~T~~~ 110 (144)
T d1v54d_ 81 AAMFFIGFTALLLIWEKHYVYGPIPHTFEE 110 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 999999999999999999707999988899
No 14
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=31.83 E-value=9.9 Score=15.43 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCCCH
Q ss_conf 645334689988598
Q gi|254781086|r 4 SSSSDFSSRFPPFDT 18 (176)
Q Consensus 4 ~~~~~~~~gmpqld~ 18 (176)
+|+....+|.|.|..
T Consensus 16 ~CHg~~g~~~p~l~~ 30 (74)
T d1wvec1 16 HCHKPEVGVGPVLEG 30 (74)
T ss_dssp HHHSTTTCSSCCCTT
T ss_pred HHHCCCCCCHHHCCC
T ss_conf 871155730242134
No 15
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=23.56 E-value=18 Score=13.76 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999
Q gi|254781086|r 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ 103 (176)
Q Consensus 56 ~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~ 103 (176)
+.|...+.+|+....+= .-...+-+++.++..++-........
T Consensus 4 ~EIerMi~eAe~~a~eD-----~~~r~~ie~rn~ae~~i~~~e~~l~e 46 (97)
T d1dkza1 4 DEIQKMVRDAEANAEAD-----RKFEELVQTRNQGDHLLHSTRKQVEE 46 (97)
T ss_dssp HHHHHHHHHHHHTHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999849989-----99999999898999999999999997
No 16
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=22.95 E-value=17 Score=13.91 Aligned_cols=28 Identities=7% Similarity=-0.148 Sum_probs=11.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99885988768899999999999999999995
Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFI 43 (176)
Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~ 43 (176)
+||+.+..+ -||.++...++..++..++
T Consensus 32 ~~P~~~~~~----~~~~~~~~~~~~~~~~~~~ 59 (64)
T d2iuba2 32 YMPELRWKW----GYPVVLAVMGVIAVIMVVY 59 (64)
T ss_dssp --------------CHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCH----HHHHHHHHHHHHHHHHHHH
T ss_conf 898878627----9999999999999999999
No 17
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.89 E-value=19 Score=13.67 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4689988598876889999999
Q gi|254781086|r 9 FSSRFPPFDTSTFLSQFFWLAI 30 (176)
Q Consensus 9 ~~~gmpqld~~~f~~q~fw~~I 30 (176)
...|||+|+.+.|...-.|..+
T Consensus 63 ~~~g~PpL~~~~~~~d~~w~~~ 84 (290)
T d2fiya1 63 REHGMPPLAYDLLVREGAWLPW 84 (290)
T ss_dssp HHTTCCTTCHHHHHHHCTTHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHH
T ss_conf 7558997773324568899999
No 18
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.12 E-value=20 Score=13.58 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999554089
Q gi|254781086|r 24 QFFWLAIIFGIFYWVTHRFILPRLS 48 (176)
Q Consensus 24 q~fw~~I~F~il~~il~~~~~~pi~ 48 (176)
.++-+++.|.++.+...++.|-+|.
T Consensus 12 Kv~~~l~~l~~l~yy~KR~~Ws~lK 36 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAMKRHKWSVLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999998623013
Done!