RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 Length = 214 Score = 75.7 bits (186), Expect = 6e-15 Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 3/147 (2%) Query: 22 LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEE 81 ++ + AI F + + + + E++ A + E+ Sbjct: 53 ITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEK 112 Query: 82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI 141 S + D LE + ++ N + +Q Q+ Sbjct: 113 SQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEH 172 Query: 142 VGEVTKDLVRKLGFSVSDADVQKILDR 168 + + V + S+S ++ + + Sbjct: 173 MINWVEKRVVQ---SISAQQEKETIAK 196 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.8 bits (77), Expect = 0.020 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 60/113 (53%) Query: 9 FSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS-------- 60 FS R F ++RF LP ++S Sbjct: 409 FSERKLKF----------------------SNRF-LP------------VASPFHSHLLV 433 Query: 61 ---DQEKMDSAKREVESMISSYEESLAIA----------RAHAKEIIDKVVAA 100 D D K V ++ + + I R + I +++V Sbjct: 434 PASDLINKDLVKNNVS--FNA--KDIQIPVYDTFDGSDLRVLSGSISERIVDC 482 Score = 33.0 bits (75), Expect = 0.038 Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 27/124 (21%) Query: 70 REVESMISSYEESLAIARAHAKEIID---KVVAAAEQNLE-------FQREVFEKDLLHK 119 ++ ++ + + KE+I A++ + F+ L Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158 Query: 120 LSNAQNEIDD----MQKKASQEVYSIVGEVTKDLVRKLG-----FSVSDADVQKILDRKR 170 + Q DD ++ ++Y + DL++ + D +K+ + Sbjct: 159 IFGGQGNTDDYFEELR-----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-- 211 Query: 171 DGID 174 G++ Sbjct: 212 -GLN 214 >1b9u_A Protein (ATP synthase); membrane protein; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1 Length = 34 Score = 32.3 bits (74), Expect = 0.068 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Query: 18 TSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME 52 +T L Q AI F +F +++ P L + +E Sbjct: 4 NATILGQ----AIAFVLFVLFCMKYVWPPLMAAIE 34 >1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} Length = 382 Score = 31.7 bits (72), Expect = 0.11 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 25 FFWLAI-IFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEK 64 FW AI + I YW +PRL + R + + S ++ Sbjct: 161 AFWFAIGVAWIGYWSRRPIFIPRLLMVDAGRADELVSATDR 201 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.11 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 11/33 (33%) Query: 113 EKDLLHKLSNAQNEI----DD----MQKKASQE 137 EK L KL Q + DD + KA+ E Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKATME 47 >3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A {Methylosinus trichosporium} Length = 392 Score = 30.9 bits (70), Expect = 0.16 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%) Query: 25 FFWLAI-IFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEK 64 F W+ I YW + I+ I E + D ++ Sbjct: 161 FPWMIAAAAWILYWFFKKGIIASYLRISEGKDEEQIGDDDR 201 >3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Length = 311 Score = 29.9 bits (66), Expect = 0.38 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Query: 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLA 84 F ++FGI Y V + P L + + E + +++ E ++ +E Sbjct: 61 LFIGTLVFGILYLV----LYPGLGNW-----KGVLPGYEGGWTQEKQWEREVAQADEKYG 111 Query: 85 IARAHAKEIIDKVVAAAEQNLEFQREVFEK 114 A + + VA Q ++ +F Sbjct: 112 PIFAKYAAMSVEEVAQDPQAVKMGARLFAN 141 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562 Score = 28.5 bits (62), Expect = 0.80 Identities = 4/24 (16%), Positives = 12/24 (50%) Query: 113 EKDLLHKLSNAQNEIDDMQKKASQ 136 +D ++++ +N + + QK Sbjct: 59 NQDFTNRINKLKNSLFEYQKNNKD 82 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 28.6 bits (63), Expect = 0.81 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 28/98 (28%) Query: 41 RFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVA 99 ++ P L+ M+ R R L++ + + D + E+E++ EE + Sbjct: 1238 KYASPNLN--MKYRKRQLVTREAQIKDWVENELEALKLEAEE----------------IP 1279 Query: 100 AAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 + +QN EF LL + NE + + A Q+ Sbjct: 1280 SEDQN-EF--------LLERTREIHNEAESQLRAAQQQ 1308 >2x12_A FAP1, fimbriae-associated protein FAP1; biofilm, cell WALL, cell adhesion, peptidoglycan-anchor; 2.90A {Streptococcus parasanguinis} Length = 348 Score = 28.6 bits (63), Expect = 0.88 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 10/113 (8%) Query: 43 ILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAE 102 ++PR S + +EK DS + ++ MIS E+ + A+++I AE Sbjct: 12 LVPRGSGAASGNKATSKGTEEKQDSVRENLDKMIS---EAEVLNDMAARKLI---TLDAE 65 Query: 103 QNLEFQREVFEKDLLHKLSNAQNEIDDMQKKAS--QEVYSIVGEVTKDLVRKL 153 Q LE + + +L +N I D + Q Y+ +G T+ L +L Sbjct: 66 QQLELMKSLVATQ--SQLEATKNLIGDPNATVADLQIAYTTLGNNTQALGNEL 116 >3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral enzyme inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A Length = 510 Score = 28.0 bits (62), Expect = 1.3 Identities = 13/104 (12%), Positives = 21/104 (20%), Gaps = 12/104 (11%) Query: 6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL--SSIMEVRRNLISSDQE 63 + + TFL + +L SSI+ + E Sbjct: 375 TEGPLVISEDLNGLTFLRRTVTR----------DPAGWFGKLEQSSILRQMYWTRGPNHE 424 Query: 64 KMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEF 107 L A H K+ L+ Sbjct: 425 DPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKE 468 >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Length = 692 Score = 28.0 bits (62), Expect = 1.3 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 105 LEFQREVFEKDLLHKLSNAQN--EIDDMQKKASQ---EVYSIV--GEVTKDLVRKL--GF 155 LE Q+ V + + L A++ I + + A E+ S + + K + L F Sbjct: 557 LEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRF 616 Query: 156 SVSDADVQKILD 167 +S+ Q ILD Sbjct: 617 KLSEKQAQAILD 628 >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Score = 28.0 bits (61), Expect = 1.3 Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 62 QEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLS 121 ++ M+ +R + + E + R + ++ L+ Q ++ ++ + Sbjct: 514 EQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER---TLALKLQEQEQLLKEGFQKESR 570 Query: 122 NAQNEIDDMQKKASQEVYSIV 142 +NEI D+Q K + + Sbjct: 571 IMKNEIQDLQTKMRRRKACTI 591 >1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Length = 970 Score = 27.7 bits (61), Expect = 1.7 Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 16/119 (13%) Query: 52 EVRRNLISSDQEKMDSAKREVESMIS--SYEESLAIARAHAKEIIDKVVAAAEQNLEFQR 109 E + + + E+ + ++ + +++ +A + + + AE+ Sbjct: 63 ECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSIL--HMLNLANLAEEV----- 115 Query: 110 EVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDR 168 + H+ N++ + + S S + E K LV ++G S +V + L Sbjct: 116 -----QIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVG--KSPEEVFEALKN 167 >3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526 Score = 27.1 bits (59), Expect = 2.1 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 7/100 (7%) Query: 61 DQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ--NLEFQREVFEK---- 114 E K+ + ++ L + + + A++ + V K Sbjct: 251 AIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAI 310 Query: 115 -DLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL 153 + +L + +NEI KKA E I G K + K+ Sbjct: 311 QENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKV 350 >2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} Length = 53 Score = 27.3 bits (61), Expect = 2.2 Identities = 11/48 (22%), Positives = 26/48 (54%) Query: 49 SIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDK 96 + +E R+ I+ + A ++++ +S + L A+A A+ II++ Sbjct: 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQ 49 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Length = 198 Score = 26.9 bits (59), Expect = 2.3 Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 4/108 (3%) Query: 60 SDQEKM-DSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLH 118 + E + +E E I E L AR A++I ++ AE E+ + Sbjct: 2 NGAELIIQEINKEAERKI---EYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL 58 Query: 119 KLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKIL 166 + ++ + + + V++ ++S+ + + + Sbjct: 59 EKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDEYFESV 106 >1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1 Length = 166 Score = 27.0 bits (59), Expect = 2.6 Identities = 12/76 (15%), Positives = 30/76 (39%) Query: 58 ISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLL 117 + E++ A +VE +++++ L A + K+ N+E + + Sbjct: 83 VEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIK 142 Query: 118 HKLSNAQNEIDDMQKK 133 + +++QKK Sbjct: 143 QAYDDFVKHAEEVQKK 158 >1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1 Length = 390 Score = 26.8 bits (58), Expect = 2.7 Identities = 3/24 (12%), Positives = 13/24 (54%) Query: 113 EKDLLHKLSNAQNEIDDMQKKASQ 136 ++D +++ ++ + + QK + Sbjct: 62 DQDFTSRINKLRDSLFNYQKNSKD 85 >3ezq_A Tumor necrosis factor receptor superfamily member 6; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1ddf_A Length = 115 Score = 26.8 bits (59), Expect = 2.8 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Query: 132 KKASQEVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRDGID 174 S+ + +I G +T K VRK G ++A + +I + Sbjct: 5 VDLSKYITTIAGVMTLSQVKGFVRKNGV--NEAKIDEIKNDNVQDTA 49 >3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus} Length = 86 Score = 26.4 bits (58), Expect = 3.6 Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 6/40 (15%) Query: 136 QEVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRD 171 + + I ++T K R+ + + +I+ Sbjct: 1 KYIPRIAEDMTIQEAKKFARENNI--KEGKIDEIMHDSIQ 38 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3fbv_A* Length = 434 Score = 26.5 bits (58), Expect = 3.6 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 14/108 (12%) Query: 40 HRFILP---RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDK 96 H P +L +++V L +++ + + ++ S K +D Sbjct: 296 HPLFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPSGDWTVKFDKTFMD- 354 Query: 97 VVAAAEQNLEFQREVF---EKDLLHKLSNAQNEIDDMQKKASQEVYSI 141 NLE R+ DLL L N + D+ + ++ + + Sbjct: 355 -------NLERYRKYHSSKLMDLLRALRNKYHHFMDLPEDIAELMGPV 395 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Length = 61 Score = 26.5 bits (59), Expect = 3.8 Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 + L A+A A+ II++ Q L+ + E++ ++ AQ EI+ +K+A +E Sbjct: 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREE 58 >2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_E* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2w6j_D 2w6e_D 2w6g_D ... Length = 482 Score = 25.9 bits (57), Expect = 4.9 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 11/80 (13%) Query: 107 FQREVFEK------DLLHKLSNA--QNEIDDMQKKASQEVYSIVGEV--TKDLVRKLGFS 156 R + E D L S N + ++ V I+ + +D++ LG Sbjct: 339 LSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMD 398 Query: 157 VSDADVQKILDRKRDGIDAF 176 + + + R R I F Sbjct: 399 ELSEEDKLTVSRARK-IQRF 417 >3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 Score = 26.1 bits (57), Expect = 5.0 Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 142 VGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDA 175 V EV L++ LG + D ++L+R + Sbjct: 258 VDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPR 291 >1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A* Length = 345 Score = 25.9 bits (56), Expect = 5.1 Identities = 4/37 (10%), Positives = 11/37 (29%) Query: 75 MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREV 111 +A +I+K + + + +V Sbjct: 297 FALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDV 333 >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 Score = 25.9 bits (56), Expect = 5.7 Identities = 7/52 (13%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 63 EKMDS--AKREVESMIS-SYEESLAIARAHAKEIIDKVVAAAEQNLEFQREV 111 E++ S V ++ ++ L A+ + + +++A++ + ++V Sbjct: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386 >1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1 Length = 324 Score = 25.8 bits (57), Expect = 6.0 Identities = 7/17 (41%), Positives = 9/17 (52%) Query: 14 PPFDTSTFLSQFFWLAI 30 +D FL FFWL + Sbjct: 78 VHWDVFQFLKHFFWLGL 94 >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Score = 25.7 bits (55), Expect = 6.7 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 7/91 (7%) Query: 46 RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAK--EIIDKVVAAAEQ 103 L + + +K + + ++ + + E++ + A + Sbjct: 609 ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDN 668 Query: 104 NLEFQREV-----FEKDLLHKLSNAQNEIDD 129 +E + F +L L QN+ D Sbjct: 669 FVELVANLKEGTKFYNELTEILVRFQNKCSD 699 >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408 Score = 25.4 bits (54), Expect = 7.0 Identities = 13/82 (15%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 90 AKEIIDKVVAAAEQNLEFQREVFE--KDLLHKLSNAQNEIDDMQKKASQEVYSIVGE-VT 146 A +++DKV A + + +V + + + A+ ++ D Q + ++ + + Sbjct: 1 APQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQII 60 Query: 147 KDLVRKLGFSVSDADVQKILDR 168 + +K+G +SD + + + Sbjct: 61 LQMGQKMGVKISDEQLDQAIAN 82 >3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Score = 25.3 bits (55), Expect = 7.2 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Query: 72 VESMISSYEESLAI---ARAHAKEIIDKVVAAAEQNLEFQREVFEK 114 V+ ++ S +E+ + R A +++D +V E++ + VFE+ Sbjct: 11 VDRLLPS-QEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQ 55 >2r05_A Programmed cell death 6-interacting protein; peptide, coiled-coil, apoptosis, cytoplasm, HOST-virus interaction, polymorphism, protein transport, transport, AIDS, capsid protein; 2.55A {Homo sapiens} PDB: 2r02_A 2r03_A 2oev_A 2oex_A 2ojq_A Length = 697 Score = 25.4 bits (54), Expect = 7.7 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 7/91 (7%) Query: 46 RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAK--EIIDKVVAAAEQ 103 L + + +K + + ++ + + E++ + A + Sbjct: 602 ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDN 661 Query: 104 NLEFQREV-----FEKDLLHKLSNAQNEIDD 129 +E + F +L L QN+ D Sbjct: 662 FVELVANLKEGTKFYNELTEILVRFQNKCSD 692 >2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225 Score = 25.3 bits (55), Expect = 8.0 Identities = 8/29 (27%), Positives = 19/29 (65%) Query: 113 EKDLLHKLSNAQNEIDDMQKKASQEVYSI 141 +++ + + QNEID + ++AS+E+ + Sbjct: 28 QQEAIEHIDEVQNEIDRLNEQASEEILKV 56 >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A* Length = 295 Score = 25.4 bits (55), Expect = 8.1 Identities = 15/98 (15%), Positives = 35/98 (35%) Query: 46 RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNL 105 RL + R +E + + RE+ + + +L +AR + + ++ + Sbjct: 8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLES 67 Query: 106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVG 143 EV + L A + + ++ +VG Sbjct: 68 LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVG 105 >2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A Length = 134 Score = 25.1 bits (55), Expect = 8.8 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 19/86 (22%) Query: 8 DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDS 67 +FS R P ++ +L + ++ ++ R I+ VR NL E + Sbjct: 43 EFSKRHPIQESDLYLEAMM-----------LENKELVLR---ILTVRENLAEGVLEFL-- 86 Query: 68 AKREVESMISSYEESLAIARAHAKEI 93 V S I + + R+ + + Sbjct: 87 -PEMVLSQIK--QSNGNHRRSLLERL 109 >2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Score = 25.2 bits (55), Expect = 9.5 Identities = 4/29 (13%), Positives = 12/29 (41%) Query: 54 RRNLISSDQEKMDSAKREVESMISSYEES 82 + E + +AK+ E+++ + Sbjct: 75 YIYISHPKPEGLAAAKKLCENLLQTVHAE 103 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.132 0.359 Gapped Lambda K H 0.267 0.0588 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,398,616 Number of extensions: 59461 Number of successful extensions: 369 Number of sequences better than 10.0: 1 Number of HSP's gapped: 363 Number of HSP's successfully gapped: 83 Length of query: 176 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 90 Effective length of database: 3,608,246 Effective search space: 324742140 Effective search space used: 324742140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.5 bits)