RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B'
[Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport,
           CF(0), stator, transport, acetylation, hydrogen ION
           transport; 2.8A {Bos taurus} SCOP: f.52.1.1
          Length = 214

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 3/147 (2%)

Query: 22  LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEE 81
           ++   + AI    F     +     +    +       +  E++  A  +        E+
Sbjct: 53  ITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEK 112

Query: 82  SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI 141
           S          + D         LE         +  ++ N  +    +Q    Q+    
Sbjct: 113 SQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEH 172

Query: 142 VGEVTKDLVRKLGFSVSDADVQKILDR 168
           +    +  V +   S+S    ++ + +
Sbjct: 173 MINWVEKRVVQ---SISAQQEKETIAK 196


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.8 bits (77), Expect = 0.020
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 60/113 (53%)

Query: 9   FSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS-------- 60
           FS R   F                      ++RF LP            ++S        
Sbjct: 409 FSERKLKF----------------------SNRF-LP------------VASPFHSHLLV 433

Query: 61  ---DQEKMDSAKREVESMISSYEESLAIA----------RAHAKEIIDKVVAA 100
              D    D  K  V    ++  + + I           R  +  I +++V  
Sbjct: 434 PASDLINKDLVKNNVS--FNA--KDIQIPVYDTFDGSDLRVLSGSISERIVDC 482



 Score = 33.0 bits (75), Expect = 0.038
 Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 27/124 (21%)

Query: 70  REVESMISSYEESLAIARAHAKEIID---KVVAAAEQNLE-------FQREVFEKDLLHK 119
            ++ ++ +   +         KE+I         A++  +       F+        L  
Sbjct: 99  NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158

Query: 120 LSNAQNEIDD----MQKKASQEVYSIVGEVTKDLVRKLG-----FSVSDADVQKILDRKR 170
           +   Q   DD    ++     ++Y     +  DL++           +  D +K+  +  
Sbjct: 159 IFGGQGNTDDYFEELR-----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-- 211

Query: 171 DGID 174
            G++
Sbjct: 212 -GLN 214


>1b9u_A Protein (ATP synthase); membrane protein; HET: GMA; NMR
          {Synthetic} SCOP: j.35.1.1
          Length = 34

 Score = 32.3 bits (74), Expect = 0.068
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 18 TSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME 52
           +T L Q    AI F +F     +++ P L + +E
Sbjct: 4  NATILGQ----AIAFVLFVLFCMKYVWPPLMAAIE 34


>1yew_A Particulate methane monooxygenase, B subunit; membrane protein,
           copper, zinc, beta barrel, oxidoreductase; 2.80A
           {Methylococcus capsulatus str}
          Length = 382

 Score = 31.7 bits (72), Expect = 0.11
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 25  FFWLAI-IFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEK 64
            FW AI +  I YW      +PRL  +   R + + S  ++
Sbjct: 161 AFWFAIGVAWIGYWSRRPIFIPRLLMVDAGRADELVSATDR 201


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.11
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 11/33 (33%)

Query: 113 EKDLLHKLSNAQNEI----DD----MQKKASQE 137
           EK  L KL   Q  +    DD    +  KA+ E
Sbjct: 18  EKQALKKL---QASLKLYADDSAPALAIKATME 47


>3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A
           {Methylosinus trichosporium}
          Length = 392

 Score = 30.9 bits (70), Expect = 0.16
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 25  FFWLAI-IFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEK 64
           F W+      I YW   + I+     I E +      D ++
Sbjct: 161 FPWMIAAAAWILYWFFKKGIIASYLRISEGKDEEQIGDDDR 201


>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices,
           oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
           stutzeri}
          Length = 311

 Score = 29.9 bits (66), Expect = 0.38
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 25  FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLA 84
            F   ++FGI Y V    + P L +        +    E   + +++ E  ++  +E   
Sbjct: 61  LFIGTLVFGILYLV----LYPGLGNW-----KGVLPGYEGGWTQEKQWEREVAQADEKYG 111

Query: 85  IARAHAKEIIDKVVAAAEQNLEFQREVFEK 114
              A    +  + VA   Q ++    +F  
Sbjct: 112 PIFAKYAAMSVEEVAQDPQAVKMGARLFAN 141


>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
           alpha helices, alternative splicing, amyloid,
           amyloidosis, blood coagulation, coiled coil; HET: NAG
           NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
           2a45_G*
          Length = 562

 Score = 28.5 bits (62), Expect = 0.80
 Identities = 4/24 (16%), Positives = 12/24 (50%)

Query: 113 EKDLLHKLSNAQNEIDDMQKKASQ 136
            +D  ++++  +N + + QK    
Sbjct: 59  NQDFTNRINKLKNSLFEYQKNNKD 82


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.6 bits (63), Expect = 0.81
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 28/98 (28%)

Query: 41   RFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVA 99
            ++  P L+  M+ R R L++ + +  D  + E+E++    EE                + 
Sbjct: 1238 KYASPNLN--MKYRKRQLVTREAQIKDWVENELEALKLEAEE----------------IP 1279

Query: 100  AAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137
            + +QN EF        LL +     NE +   + A Q+
Sbjct: 1280 SEDQN-EF--------LLERTREIHNEAESQLRAAQQQ 1308


>2x12_A FAP1, fimbriae-associated protein FAP1; biofilm, cell WALL, cell
           adhesion, peptidoglycan-anchor; 2.90A {Streptococcus
           parasanguinis}
          Length = 348

 Score = 28.6 bits (63), Expect = 0.88
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 43  ILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAE 102
           ++PR S      +      +EK DS +  ++ MIS   E+  +    A+++I      AE
Sbjct: 12  LVPRGSGAASGNKATSKGTEEKQDSVRENLDKMIS---EAEVLNDMAARKLI---TLDAE 65

Query: 103 QNLEFQREVFEKDLLHKLSNAQNEIDDMQKKAS--QEVYSIVGEVTKDLVRKL 153
           Q LE  + +       +L   +N I D     +  Q  Y+ +G  T+ L  +L
Sbjct: 66  QQLELMKSLVATQ--SQLEATKNLIGDPNATVADLQIAYTTLGNNTQALGNEL 116


>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral
           replication, antiviral enzyme inhibitor, helicase,
           hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A*
           3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
          Length = 510

 Score = 28.0 bits (62), Expect = 1.3
 Identities = 13/104 (12%), Positives = 21/104 (20%), Gaps = 12/104 (11%)

Query: 6   SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRL--SSIMEVRRNLISSDQE 63
           +          +  TFL +                     +L  SSI+         + E
Sbjct: 375 TEGPLVISEDLNGLTFLRRTVTR----------DPAGWFGKLEQSSILRQMYWTRGPNHE 424

Query: 64  KMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEF 107
                              L  A  H      K+       L+ 
Sbjct: 425 DPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKE 468


>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
           topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
           aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
          Length = 692

 Score = 28.0 bits (62), Expect = 1.3
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 105 LEFQREVFEKDLLHKLSNAQN--EIDDMQKKASQ---EVYSIV--GEVTKDLVRKL--GF 155
           LE Q+ V  +   + L  A++   I +  + A     E+ S +   +  K  +  L   F
Sbjct: 557 LEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRF 616

Query: 156 SVSDADVQKILD 167
            +S+   Q ILD
Sbjct: 617 KLSEKQAQAILD 628


>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
           hydrolysis, GDP, GMP, dynamin related, large GTPase
           family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
           SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
           2bc9_A* 2d4h_A*
          Length = 592

 Score = 28.0 bits (61), Expect = 1.3
 Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 62  QEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLS 121
           ++ M+  +R  +  +    E +   R    +  ++        L+ Q ++ ++    +  
Sbjct: 514 EQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER---TLALKLQEQEQLLKEGFQKESR 570

Query: 122 NAQNEIDDMQKKASQEVYSIV 142
             +NEI D+Q K  +     +
Sbjct: 571 IMKNEIQDLQTKMRRRKACTI 591


>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
           fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
          Length = 970

 Score = 27.7 bits (61), Expect = 1.7
 Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 52  EVRRNLISSDQEKMDSAKREVESMIS--SYEESLAIARAHAKEIIDKVVAAAEQNLEFQR 109
           E        + +   +   E+ + ++  +  +++ +A +     +  +   AE+      
Sbjct: 63  ECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSIL--HMLNLANLAEEV----- 115

Query: 110 EVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDR 168
                 + H+  N++ +      + S    S + E  K LV ++G   S  +V + L  
Sbjct: 116 -----QIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVG--KSPEEVFEALKN 167


>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
          Length = 526

 Score = 27.1 bits (59), Expect = 2.1
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 61  DQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ--NLEFQREVFEK---- 114
             E     K+ + ++       L   +     +   +   A++  +      V  K    
Sbjct: 251 AIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAI 310

Query: 115 -DLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL 153
            +   +L + +NEI    KKA  E   I G   K +  K+
Sbjct: 311 QENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKV 350


>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP
          synthesis, cell inner membrane, cell membrane, CF(0),
          hydrogen ION transport; NMR {Escherichia coli k-12}
          Length = 53

 Score = 27.3 bits (61), Expect = 2.2
 Identities = 11/48 (22%), Positives = 26/48 (54%)

Query: 49 SIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDK 96
          + +E R+  I+      + A ++++   +S  + L  A+A A+ II++
Sbjct: 2  AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQ 49


>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 1.85A {Pyrococcus horikoshii OT3}
           SCOP: d.81.4.1 PDB: 2dma_A
          Length = 198

 Score = 26.9 bits (59), Expect = 2.3
 Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 60  SDQEKM-DSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLH 118
           +  E +     +E E  I   E  L  AR  A++I ++    AE   E+     +     
Sbjct: 2   NGAELIIQEINKEAERKI---EYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL 58

Query: 119 KLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKIL 166
           +            ++    +   +     + V++   ++S+ +  + +
Sbjct: 59  EKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDEYFESV 106


>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short
           helix-helix" recognition motif, lipid binding protein;
           NMR {Manduca sexta} SCOP: a.63.1.1
          Length = 166

 Score = 27.0 bits (59), Expect = 2.6
 Identities = 12/76 (15%), Positives = 30/76 (39%)

Query: 58  ISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLL 117
           +    E++  A  +VE   +++++ L  A     +   K+      N+E   +     + 
Sbjct: 83  VEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIK 142

Query: 118 HKLSNAQNEIDDMQKK 133
               +     +++QKK
Sbjct: 143 QAYDDFVKHAEEVQKK 158


>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
           taurus} SCOP: i.9.1.1
          Length = 390

 Score = 26.8 bits (58), Expect = 2.7
 Identities = 3/24 (12%), Positives = 13/24 (54%)

Query: 113 EKDLLHKLSNAQNEIDDMQKKASQ 136
           ++D   +++  ++ + + QK +  
Sbjct: 62  DQDFTSRINKLRDSLFNYQKNSKD 85


>3ezq_A Tumor necrosis factor receptor superfamily member 6; apoptosis,
           DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo
           sapiens} PDB: 1ddf_A
          Length = 115

 Score = 26.8 bits (59), Expect = 2.8
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 132 KKASQEVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRDGID 174
              S+ + +I G +T    K  VRK G   ++A + +I +       
Sbjct: 5   VDLSKYITTIAGVMTLSQVKGFVRKNGV--NEAKIDEIKNDNVQDTA 49


>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC,
           FAS; 6.80A {Mus musculus}
          Length = 86

 Score = 26.4 bits (58), Expect = 3.6
 Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 6/40 (15%)

Query: 136 QEVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRD 171
           + +  I  ++T    K   R+      +  + +I+     
Sbjct: 1   KYIPRIAEDMTIQEAKKFARENNI--KEGKIDEIMHDSIQ 38


>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
           protein-nucleotide complex, ATP-binding, endoplasmic
           reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
           cerevisiae} PDB: 3fbv_A*
          Length = 434

 Score = 26.5 bits (58), Expect = 3.6
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 40  HRFILP---RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDK 96
           H    P   +L  +++V   L   +++   +   + ++       S        K  +D 
Sbjct: 296 HPLFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPSGDWTVKFDKTFMD- 354

Query: 97  VVAAAEQNLEFQREVF---EKDLLHKLSNAQNEIDDMQKKASQEVYSI 141
                  NLE  R+       DLL  L N  +   D+ +  ++ +  +
Sbjct: 355 -------NLERYRKYHSSKLMDLLRALRNKYHHFMDLPEDIAELMGPV 395


>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia
           coli} SCOP: f.23.21.1
          Length = 61

 Score = 26.5 bits (59), Expect = 3.8
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 81  ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137
           + L  A+A A+ II++      Q L+  +   E++    ++ AQ EI+  +K+A +E
Sbjct: 2   DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREE 58


>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+
           transporting), F1FO ATP synthase, F1-ATPase, hydrolase,
           ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP:
           a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D*
           1e1r_D* 1efr_D* 1e79_E* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D*
           1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D*
           2w6j_D 2w6e_D 2w6g_D ...
          Length = 482

 Score = 25.9 bits (57), Expect = 4.9
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 107 FQREVFEK------DLLHKLSNA--QNEIDDMQKKASQEVYSIVGEV--TKDLVRKLGFS 156
             R + E       D L   S     N +       ++ V  I+ +    +D++  LG  
Sbjct: 339 LSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMD 398

Query: 157 VSDADVQKILDRKRDGIDAF 176
               + +  + R R  I  F
Sbjct: 399 ELSEEDKLTVSRARK-IQRF 417


>3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding
           domain, structural genomics, structural genomics
           consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo
           sapiens}
          Length = 318

 Score = 26.1 bits (57), Expect = 5.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 142 VGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDA 175
           V EV   L++ LG  +   D  ++L+R    +  
Sbjct: 258 VDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPR 291


>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD;
           nucleoside-phosphorylases; 2.05A {Sulfolobus
           solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A
           1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
          Length = 345

 Score = 25.9 bits (56), Expect = 5.1
 Identities = 4/37 (10%), Positives = 11/37 (29%)

Query: 75  MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREV 111
                         +A  +I+K +    + +    +V
Sbjct: 297 FALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDV 333


>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
           ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3
           d.122.1.2
          Length = 390

 Score = 25.9 bits (56), Expect = 5.7
 Identities = 7/52 (13%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 63  EKMDS--AKREVESMIS-SYEESLAIARAHAKEIIDKVVAAAEQNLEFQREV 111
           E++ S      V  ++  ++   L      A+ + +  +++A++ +   ++V
Sbjct: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386


>1eys_M Photosynthetic reaction center; membrane protein complex,
          electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA
          PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
          Length = 324

 Score = 25.8 bits (57), Expect = 6.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 14 PPFDTSTFLSQFFWLAI 30
            +D   FL  FFWL +
Sbjct: 78 VHWDVFQFLKHFFWLGL 94


>2xs1_A Programmed cell death 6-interacting protein; protein
           transport-viral protein complex, cell cycle; 2.30A {Homo
           sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
           2ojq_A
          Length = 704

 Score = 25.7 bits (55), Expect = 6.7
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 46  RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAK--EIIDKVVAAAEQ 103
            L  +       +    +K +   + ++     + +            E++  +  A + 
Sbjct: 609 ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDN 668

Query: 104 NLEFQREV-----FEKDLLHKLSNAQNEIDD 129
            +E    +     F  +L   L   QN+  D
Sbjct: 669 FVELVANLKEGTKFYNELTEILVRFQNKCSD 699


>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
           periplasmic molecular chaperone, membrane protein
           folding, GRAM negative bacteria; 3.00A {Escherichia
           coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
          Length = 408

 Score = 25.4 bits (54), Expect = 7.0
 Identities = 13/82 (15%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 90  AKEIIDKVVAAAEQNLEFQREVFE--KDLLHKLSNAQNEIDDMQKKASQEVYSIVGE-VT 146
           A +++DKV A     +  + +V    + +    + A+ ++ D      Q +  ++ + + 
Sbjct: 1   APQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQII 60

Query: 147 KDLVRKLGFSVSDADVQKILDR 168
             + +K+G  +SD  + + +  
Sbjct: 61  LQMGQKMGVKISDEQLDQAIAN 82


>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
           infectious disease, S FAD, FADH, tuberculosis,
           oxidoredu; HET: FAD; 2.35A {Mycobacterium
           thermoresistibile}
          Length = 387

 Score = 25.3 bits (55), Expect = 7.2
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 72  VESMISSYEESLAI---ARAHAKEIIDKVVAAAEQNLEFQREVFEK 114
           V+ ++ S +E+  +    R  A +++D +V   E++  +   VFE+
Sbjct: 11  VDRLLPS-QEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQ 55


>2r05_A Programmed cell death 6-interacting protein; peptide, coiled-coil,
           apoptosis, cytoplasm, HOST-virus interaction,
           polymorphism, protein transport, transport, AIDS, capsid
           protein; 2.55A {Homo sapiens} PDB: 2r02_A 2r03_A 2oev_A
           2oex_A 2ojq_A
          Length = 697

 Score = 25.4 bits (54), Expect = 7.7
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 46  RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAK--EIIDKVVAAAEQ 103
            L  +       +    +K +   + ++     + +            E++  +  A + 
Sbjct: 602 ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDN 661

Query: 104 NLEFQREV-----FEKDLLHKLSNAQNEIDD 129
            +E    +     F  +L   L   QN+  D
Sbjct: 662 FVELVANLKEGTKFYNELTEILVRFQNKCSD 692


>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET:
           TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
          Length = 225

 Score = 25.3 bits (55), Expect = 8.0
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 113 EKDLLHKLSNAQNEIDDMQKKASQEVYSI 141
           +++ +  +   QNEID + ++AS+E+  +
Sbjct: 28  QQEAIEHIDEVQNEIDRLNEQASEEILKV 56


>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
           ultrahigh resolution, protein transport; 1.10A {Thermus
           aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
           1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
           2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A
           2ng1_A*
          Length = 295

 Score = 25.4 bits (55), Expect = 8.1
 Identities = 15/98 (15%), Positives = 35/98 (35%)

Query: 46  RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNL 105
           RL   +   R      +E + +  RE+   +   + +L +AR   + + ++ +       
Sbjct: 8   RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLES 67

Query: 106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVG 143
               EV    +   L  A      +     + ++ +VG
Sbjct: 68  LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVG 105


>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A
           {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A
           2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
          Length = 134

 Score = 25.1 bits (55), Expect = 8.8
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 19/86 (22%)

Query: 8   DFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDS 67
           +FS R P  ++  +L               + ++ ++ R   I+ VR NL     E +  
Sbjct: 43  EFSKRHPIQESDLYLEAMM-----------LENKELVLR---ILTVRENLAEGVLEFL-- 86

Query: 68  AKREVESMISSYEESLAIARAHAKEI 93
               V S I   + +    R+  + +
Sbjct: 87  -PEMVLSQIK--QSNGNHRRSLLERL 109


>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; NMR {Homo sapiens}
          Length = 119

 Score = 25.2 bits (55), Expect = 9.5
 Identities = 4/29 (13%), Positives = 12/29 (41%)

Query: 54  RRNLISSDQEKMDSAKREVESMISSYEES 82
              +     E + +AK+  E+++ +    
Sbjct: 75  YIYISHPKPEGLAAAKKLCENLLQTVHAE 103


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,398,616
Number of extensions: 59461
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 83
Length of query: 176
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 90
Effective length of database: 3,608,246
Effective search space: 324742140
Effective search space used: 324742140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)