RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Score = 28.7 bits (64), Expect = 0.27 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Query: 137 EVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRD 171 +Y++V V K+ V++LG SD ++ ++ + Sbjct: 3 TLYAVVENVPPLRWKEFVKRLGL--SDHEIDRLELQNGR 39 >d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Score = 26.8 bits (59), Expect = 1.2 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 133 KASQEVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRDGID 174 S+ + +I G +T K VRK G ++A + +I + Sbjct: 12 DLSKYITTIAGVMTLSQVKGFVRKNGV--NEAKIDEIKNDNVQDTA 55 >d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]} Length = 61 Score = 26.1 bits (58), Expect = 1.6 Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 + L A+A A+ II++ Q L+ + E++ ++ AQ EI+ +K+A +E Sbjct: 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREE 58 >d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 273 Score = 25.8 bits (56), Expect = 2.4 Identities = 4/37 (10%), Positives = 11/37 (29%) Query: 75 MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREV 111 +A +I+K + + + +V Sbjct: 227 FALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDV 263 >d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Score = 24.9 bits (54), Expect = 3.6 Identities = 8/29 (27%), Positives = 19/29 (65%) Query: 113 EKDLLHKLSNAQNEIDDMQKKASQEVYSI 141 +++ + + QNEID + ++AS+E+ + Sbjct: 28 QQEAIEHIDEVQNEIDRLNEQASEEILKV 56 >d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Ascophyllum nodosum [TaxId: 52969]} Length = 555 Score = 24.8 bits (54), Expect = 4.7 Identities = 6/25 (24%), Positives = 10/25 (40%) Query: 9 FSSRFPPFDTSTFLSQFFWLAIIFG 33 F + F +T F+SQ + Sbjct: 194 FRATFVGVETGPFISQLLVNSFTID 218 >d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]} Length = 318 Score = 24.3 bits (53), Expect = 6.0 Identities = 7/18 (38%), Positives = 9/18 (50%) Query: 14 PPFDTSTFLSQFFWLAII 31 +D FL FFWL + Sbjct: 78 VHWDVFQFLKHFFWLGLE 95 >d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 99 Score = 24.3 bits (52), Expect = 6.1 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 98 VAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGE 144 +A + + R+ ++ + +I +MQ++A Y VGE Sbjct: 48 IALLQMDGRMTRDEVKQ-AIELAKKGALQIYEMQREAILRRYIEVGE 93 >d2c4ba1 d.1.1.2 (A:3-110) Barnase {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 108 Score = 24.3 bits (53), Expect = 6.6 Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 145 VTKDLVRKLGFSVSDADVQKILDRKRDGIDAF 176 +TK + LG+ S ++ + K G D F Sbjct: 23 ITKSEAQALGWVASKGNLADVAPGKSIGGDIF 54 >d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus thermophilus [TaxId: 274]} Length = 98 Score = 24.2 bits (53), Expect = 7.0 Identities = 6/32 (18%), Positives = 10/32 (31%) Query: 87 RAHAKEIIDKVVAAAEQNLEFQREVFEKDLLH 118 A +E + + FQ + E L Sbjct: 64 PAWVEETMRAAARFLAEAGGFQVALEEFRLEA 95 >d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Score = 23.8 bits (51), Expect = 8.0 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 128 DDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGID 174 ++ A + VG+ + L R+L SD + I DR + Sbjct: 6 EEDLCAAFNVICDNVGKDWRRLARQLKV--SDTKIDSIEDRYPRNLT 50 >d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Score = 23.7 bits (51), Expect = 8.7 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 16/127 (12%) Query: 35 FYWVTHRFILPRLSSIMEVRRNLISS---DQEKMDSAKREVESMISSYEESLAIARAHAK 91 F W++ + S I+ + ++ ++ + A +E + Y S A A + Sbjct: 203 FEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATG-IECCMRDYGISTKEAMAKFQ 261 Query: 92 EIIDKVVAAAEQNLEFQREVFE-----KDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVT 146 + + + + + L + N ++ + + Y+ +V Sbjct: 262 NMAE------TAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIH-NLDGYTHPEKVL 314 Query: 147 KDLVRKL 153 K + L Sbjct: 315 KPHIINL 321 >d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} Length = 388 Score = 23.8 bits (51), Expect = 9.0 Identities = 5/19 (26%), Positives = 11/19 (57%) Query: 154 GFSVSDADVQKILDRKRDG 172 G ++ D+ + L R++ G Sbjct: 24 GLPLTAEDINEDLRRRQGG 42 >d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase {Escherichia coli [TaxId: 562]} Length = 439 Score = 23.5 bits (51), Expect = 9.6 Identities = 8/17 (47%), Positives = 12/17 (70%) Query: 148 DLVRKLGFSVSDADVQK 164 ++R+LGFS SD V + Sbjct: 69 PVLRQLGFSGSDEQVLE 85 >d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Score = 23.7 bits (51), Expect = 9.7 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 61 DQEKMDSAKREVESMISSY-EESLAIARAHAKEIIDK 96 + EK+ A EV + +S+ S+A + II K Sbjct: 2 EPEKLGQALTEVYAKANSFTVSSVAAPSWLHRFIIGK 38 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.132 0.359 Gapped Lambda K H 0.267 0.0599 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 603,259 Number of extensions: 25856 Number of successful extensions: 132 Number of sequences better than 10.0: 1 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 31 Length of query: 176 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 97 Effective length of database: 1,322,926 Effective search space: 128323822 Effective search space used: 128323822 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.3 bits)