RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B'
[Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 28.7 bits (64), Expect = 0.27
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 137 EVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRD 171
            +Y++V  V     K+ V++LG   SD ++ ++  +   
Sbjct: 3   TLYAVVENVPPLRWKEFVKRLGL--SDHEIDRLELQNGR 39


>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 133 KASQEVYSIVGEVT----KDLVRKLGFSVSDADVQKILDRKRDGID 174
             S+ + +I G +T    K  VRK G   ++A + +I +       
Sbjct: 12  DLSKYITTIAGVMTLSQVKGFVRKNGV--NEAKIDEIKNDNVQDTA 55


>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
           {Escherichia coli [TaxId: 562]}
          Length = 61

 Score = 26.1 bits (58), Expect = 1.6
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 81  ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137
           + L  A+A A+ II++      Q L+  +   E++    ++ AQ EI+  +K+A +E
Sbjct: 2   DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREE 58


>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase
           (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 273

 Score = 25.8 bits (56), Expect = 2.4
 Identities = 4/37 (10%), Positives = 11/37 (29%)

Query: 75  MISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREV 111
                         +A  +I+K +    + +    +V
Sbjct: 227 FALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDV 263


>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 222

 Score = 24.9 bits (54), Expect = 3.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 113 EKDLLHKLSNAQNEIDDMQKKASQEVYSI 141
           +++ +  +   QNEID + ++AS+E+  +
Sbjct: 28  QQEAIEHIDEVQNEIDRLNEQASEEILKV 56


>d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase)
           {Ascophyllum nodosum [TaxId: 52969]}
          Length = 555

 Score = 24.8 bits (54), Expect = 4.7
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 9   FSSRFPPFDTSTFLSQFFWLAIIFG 33
           F + F   +T  F+SQ    +    
Sbjct: 194 FRATFVGVETGPFISQLLVNSFTID 218


>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium
          tepidum [TaxId: 1050]}
          Length = 318

 Score = 24.3 bits (53), Expect = 6.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 14 PPFDTSTFLSQFFWLAII 31
            +D   FL  FFWL + 
Sbjct: 78 VHWDVFQFLKHFFWLGLE 95


>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 99

 Score = 24.3 bits (52), Expect = 6.1
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 98  VAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGE 144
           +A  + +    R+  ++  +        +I +MQ++A    Y  VGE
Sbjct: 48  IALLQMDGRMTRDEVKQ-AIELAKKGALQIYEMQREAILRRYIEVGE 93


>d2c4ba1 d.1.1.2 (A:3-110) Barnase {Bacillus amyloliquefaciens
           [TaxId: 1390]}
          Length = 108

 Score = 24.3 bits (53), Expect = 6.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 145 VTKDLVRKLGFSVSDADVQKILDRKRDGIDAF 176
           +TK   + LG+  S  ++  +   K  G D F
Sbjct: 23  ITKSEAQALGWVASKGNLADVAPGKSIGGDIF 54


>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus
           thermophilus [TaxId: 274]}
          Length = 98

 Score = 24.2 bits (53), Expect = 7.0
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 87  RAHAKEIIDKVVAAAEQNLEFQREVFEKDLLH 118
            A  +E +        +   FQ  + E  L  
Sbjct: 64  PAWVEETMRAAARFLAEAGGFQVALEEFRLEA 95


>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 103

 Score = 23.8 bits (51), Expect = 8.0
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 128 DDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGID 174
           ++    A   +   VG+  + L R+L    SD  +  I DR    + 
Sbjct: 6   EEDLCAAFNVICDNVGKDWRRLARQLKV--SDTKIDSIEDRYPRNLT 50


>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco
           (Nicotiana tabacum) [TaxId: 4097]}
          Length = 328

 Score = 23.7 bits (51), Expect = 8.7
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 35  FYWVTHRFILPRLSSIMEVRRNLISS---DQEKMDSAKREVESMISSYEESLAIARAHAK 91
           F W++    +   S I+    +  ++   ++ +   A   +E  +  Y  S   A A  +
Sbjct: 203 FEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATG-IECCMRDYGISTKEAMAKFQ 261

Query: 92  EIIDKVVAAAEQNLEFQREVFE-----KDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVT 146
            + +          +    +        + L  + N    ++      + + Y+   +V 
Sbjct: 262 NMAE------TAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIH-NLDGYTHPEKVL 314

Query: 147 KDLVRKL 153
           K  +  L
Sbjct: 315 KPHIINL 321


>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 388

 Score = 23.8 bits (51), Expect = 9.0
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 154 GFSVSDADVQKILDRKRDG 172
           G  ++  D+ + L R++ G
Sbjct: 24  GLPLTAEDINEDLRRRQGG 42


>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
           {Escherichia coli [TaxId: 562]}
          Length = 439

 Score = 23.5 bits (51), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 148 DLVRKLGFSVSDADVQK 164
            ++R+LGFS SD  V +
Sbjct: 69  PVLRQLGFSGSDEQVLE 85


>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 90

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 61 DQEKMDSAKREVESMISSY-EESLAIARAHAKEIIDK 96
          + EK+  A  EV +  +S+   S+A      + II K
Sbjct: 2  EPEKLGQALTEVYAKANSFTVSSVAAPSWLHRFIIGK 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 603,259
Number of extensions: 25856
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 31
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)