BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B'
[Candidatus Liberibacter asiaticus str. psy62]
(176 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 354 bits (909), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MASSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS 60
MASSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS
Sbjct: 1 MASSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS 60
Query: 61 DQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120
DQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL
Sbjct: 61 DQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120
Query: 121 SNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDAF 176
SNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDAF
Sbjct: 121 SNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDAF 176
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 25.4 bits (54), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 22/85 (25%)
Query: 60 SDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDK-------------VVAAA----E 102
SD+EK+ S + + S +EE++A H + I+D V+AAA +
Sbjct: 606 SDREKLFS--NSLARVQSHFEETIA---GHPQSIVDSISNSTNNLYDKIMVLAAALSESQ 660
Query: 103 QNLEFQREVFEKDLLHKLSNAQNEI 127
++L+ + D++HK++NA+N++
Sbjct: 661 KSLDNSLKAHATDVVHKITNAENQL 685
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 23.5 bits (49), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 12 RFPPFDTSTFLSQFFWLAIIFGIFY 36
RFP +S + QF + ++ G FY
Sbjct: 238 RFPALGSSNVMGQFGLIPLLIGTFY 262
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 23.5 bits (49), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 73 ESMISSY---EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD 129
ES+I + E L++ ++ KE +K +A LEF + E+ L +L N IDD
Sbjct: 1076 ESLIKKFFGEEIKLSVFDSNTKES-NKSLAVINSTLEFAHSIRERVLFDELIQGINHIDD 1134
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 23.1 bits (48), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEK 64
F P TF+ Q A+I G+F + + I L+S + R N I+ EK
Sbjct: 604 FYPNHDKTFIEQ----AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 294
Score = 22.7 bits (47), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 131 QKKASQEVYSIVGEVTKDLVRKL 153
QKK +SI+G++T+++ + L
Sbjct: 22 QKKVVLSSFSIIGDITQNIAKDL 44
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 22.3 bits (46), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 66 DSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFE-KDLLHKL 120
D + E+E ++ + +A+A+ +E++ K A +++ QR +++ +L+HK+
Sbjct: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA---KDVSVQRVLYDVSELIHKM 95
>gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 21.9 bits (45), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 89 HAKEIIDKVVAAAEQN 104
H KE I K+V EQN
Sbjct: 79 HLKEAIQKIVKTIEQN 94
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,541
Number of Sequences: 1233
Number of extensions: 3747
Number of successful extensions: 21
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 20
length of query: 176
length of database: 328,796
effective HSP length: 68
effective length of query: 108
effective length of database: 244,952
effective search space: 26454816
effective search space used: 26454816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 35 (18.1 bits)