Query gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs 104 out of 279
Neff 3.8
Searched_HMMs 39220
Date Mon May 30 04:24:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781087.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07159 F0F1 ATP synthase sub 100.0 6.1E-34 1.6E-38 190.9 9.4 89 2-90 12-100 (101)
2 PRK07558 F0F1 ATP synthase sub 100.0 2.9E-29 7.5E-34 167.3 10.2 72 19-90 3-74 (74)
3 KOG3025 consensus 100.0 1.1E-29 2.8E-34 169.4 6.8 86 6-91 52-137 (137)
4 PRK08910 consensus 100.0 8E-29 2E-33 165.1 9.8 71 20-90 2-72 (73)
5 PRK13469 F0F1 ATP synthase sub 100.0 7.7E-28 2E-32 160.1 10.3 77 14-90 2-78 (79)
6 PRK13471 F0F1 ATP synthase sub 99.9 2E-27 5.1E-32 158.0 9.2 79 13-91 6-85 (85)
7 TIGR03322 alt_F1F0_F0_C altern 99.9 5.7E-25 1.5E-29 145.6 9.3 76 15-90 2-78 (86)
8 PRK13468 F0F1 ATP synthase sub 99.9 1.2E-24 2.9E-29 144.1 9.5 74 17-90 3-77 (82)
9 PRK13470 consensus 99.9 1.3E-24 3.2E-29 143.9 9.2 76 15-90 3-79 (88)
10 PRK07354 F0F1 ATP synthase sub 99.9 4.2E-24 1.1E-28 141.2 9.1 75 16-90 2-77 (81)
11 CHL00061 atpH ATP synthase CF0 99.9 6.7E-24 1.7E-28 140.2 9.3 74 17-90 3-77 (81)
12 PRK08482 F0F1 ATP synthase sub 99.9 2.4E-21 6.2E-26 127.3 10.2 85 6-90 11-100 (105)
13 PRK07874 F0F1 ATP synthase sub 99.8 5.9E-21 1.5E-25 125.4 8.1 64 20-86 16-79 (80)
14 COG0636 AtpE F0F1-type ATP syn 99.8 1.6E-18 4E-23 113.1 10.4 72 20-91 6-78 (79)
15 PRK06876 F0F1 ATP synthase sub 99.8 4.2E-18 1.1E-22 110.9 10.6 75 17-91 2-77 (78)
16 PRK05880 F0F1 ATP synthase sub 99.7 1.2E-17 3.1E-22 108.6 9.7 74 17-90 3-77 (81)
17 TIGR01260 ATP_synt_c ATP synth 99.7 7.4E-17 1.9E-21 104.7 4.8 57 34-90 2-58 (58)
18 pfam00137 ATP-synt_C ATP synth 99.7 5.5E-16 1.4E-20 100.2 8.9 64 23-90 2-66 (66)
19 PRK13466 F0F1 ATP synthase sub 99.4 1.8E-12 4.6E-17 82.5 8.2 62 23-87 4-65 (66)
20 PRK13464 F0F1 ATP synthase sub 99.4 7.9E-12 2E-16 79.3 10.3 72 19-90 11-83 (101)
21 PRK06251 V-type ATP synthase s 98.9 8.2E-10 2.1E-14 69.1 3.1 77 11-91 23-100 (101)
22 PRK13467 F0F1 ATP synthase sub 98.8 1.2E-08 3.2E-13 63.1 7.4 62 23-87 4-65 (66)
23 PRK08344 V-type ATP synthase s 98.7 1.8E-07 4.7E-12 57.2 10.4 74 13-91 85-159 (159)
24 PRK06558 V-type ATP synthase s 98.6 4.4E-07 1.1E-11 55.3 10.3 72 14-89 80-152 (155)
25 PRK06271 V-type ATP synthase s 98.4 4.8E-07 1.2E-11 55.1 5.3 65 22-91 146-211 (213)
26 PRK06271 V-type ATP synthase s 98.3 2.7E-07 7E-12 56.4 2.8 64 22-90 72-136 (213)
27 PRK08344 V-type ATP synthase s 98.1 4.3E-06 1.1E-10 50.3 5.4 64 22-89 6-70 (159)
28 PRK06558 V-type ATP synthase s 98.0 4.9E-05 1.2E-09 45.0 8.9 67 20-90 10-77 (155)
29 PRK09621 V-type ATP synthase s 98.0 6.6E-05 1.7E-09 44.3 9.1 68 17-88 73-141 (141)
30 KOG0232 consensus 97.0 0.00046 1.2E-08 40.1 2.6 68 19-90 85-153 (156)
31 PRK09621 V-type ATP synthase s 96.8 0.00066 1.7E-08 39.3 2.2 65 22-90 4-69 (141)
32 PRK06649 V-type ATP synthase s 96.6 0.038 9.7E-07 30.4 9.8 65 22-90 79-144 (144)
33 KOG0233 consensus 71.9 6.2 0.00016 19.2 3.9 66 18-87 122-188 (196)
34 pfam06716 DUF1201 Protein of u 48.5 22 0.00055 16.5 4.7 29 61-89 4-32 (54)
35 PRK09400 secE preprotein trans 42.7 27 0.00068 16.0 3.2 28 12-39 23-50 (59)
36 COG2443 Sss1 Preprotein transl 42.6 27 0.00069 16.0 3.2 30 12-41 27-56 (65)
37 KOG2887 consensus 42.3 27 0.00069 16.0 4.0 37 55-91 34-70 (175)
38 TIGR00327 secE_euk_arch protei 34.2 37 0.00095 15.3 3.3 30 12-41 22-51 (61)
39 pfam09472 MtrF Tetrahydrometha 24.9 56 0.0014 14.4 3.7 29 50-78 25-53 (64)
40 cd07050 BMC_EutL_repeat2 ethan 22.2 51 0.0013 14.6 1.6 16 42-57 71-86 (87)
No 1
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=100.00 E-value=6.1e-34 Score=190.90 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58998899875302359999999999999999874789999999999999823787898799999999999999999999
Q gi|254781087|r 2 DKQMMEAATFAAANGYYSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLL 81 (91)
Q Consensus 2 ~~~~~~~~~~~a~~~~~a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfal 81 (91)
-|++++.+|+..++.+-.+++||||||+|++|.+|+|+|||++|++++++++||||+++++|++||||+|++|+++||||
T Consensus 12 ~~~~~~~~~t~~~~~~~~~aakyIGAGlA~ig~iG~GiG~G~a~gkaveavaRNPea~~~i~~~miLG~AlaEatgIyaL 91 (101)
T PRK07159 12 IQNFQEVSQTTVADSSNLKAFAYLGAGLAMIGVIGVGAGQGYAAGKACDAIARNPEAQKQVFRVLVIGTAISETSSIYAL 91 (101)
T ss_pred HHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999706066515436289998837899995544541288999999999966867888599999999999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999970
Q gi|254781087|r 82 LVVMLLLFV 90 (91)
Q Consensus 82 viA~lllFa 90 (91)
||||||+|+
T Consensus 92 vIA~lLlFV 100 (101)
T PRK07159 92 LVALILIFV 100 (101)
T ss_pred HHHHHHHHC
T ss_conf 999999956
No 2
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.96 E-value=2.9e-29 Score=167.26 Aligned_cols=72 Identities=50% Similarity=0.815 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 19 SLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 19 a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
.+++|+||+|++++|+.|+|+|+|++|++++++++||||+++++|+|.++|||++|+++|||||++|+++|+
T Consensus 3 ~~aaK~IGaGlA~ig~~Gag~GiG~vFg~ll~g~aRNPs~~~~lf~~~ilGfAl~EA~gLF~l~vA~LllFa 74 (74)
T PRK07558 3 AEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADKQFGYLLIGAALAEALGIFSFLIALLLLFA 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 789999857799998153784399999999999866924888789999999999999999999999999759
No 3
>KOG3025 consensus
Probab=99.96 E-value=1.1e-29 Score=169.44 Aligned_cols=86 Identities=23% Similarity=0.404 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998753023599999999999999998747899999999999998237878987999999999999999999999999
Q gi|254781087|r 6 MEAATFAAANGYYSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVM 85 (91)
Q Consensus 6 ~~~~~~~a~~~~~a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~ 85 (91)
.+.+|++...++++.++||||||.+++|+.|+|+|+|.+|++++.+++|||+.++++|+|++||||++|++|+||||++|
T Consensus 52 ~RsFQTS~is~~i~~aak~igag~atvgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~af 131 (137)
T KOG3025 52 PRSFQTSVISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAF 131 (137)
T ss_pred CCCEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00101016688799999885355244200455620999999888600479608888899999999999988089999999
Q ss_pred HHHHHC
Q ss_conf 999709
Q gi|254781087|r 86 LLLFVI 91 (91)
Q Consensus 86 lllFav 91 (91)
+++|++
T Consensus 132 lilfa~ 137 (137)
T KOG3025 132 LILFAM 137 (137)
T ss_pred HHHHCC
T ss_conf 999529
No 4
>PRK08910 consensus
Probab=99.96 E-value=8e-29 Score=165.06 Aligned_cols=71 Identities=44% Similarity=0.680 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 20 LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 20 ~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
.++||||+|++++|+.|+|+|+|++|++++++++||||+++++|+|.++|+|++|++||||||+||+++|+
T Consensus 2 ~a~K~igaGla~iGm~Gag~Gig~IF~sll~g~aRNPs~~~~lf~ya~lG~Al~EA~GLF~l~vA~lllF~ 72 (73)
T PRK08910 2 VSLKFIAIGLMVIGMYGAALGVANIFSSMLNGIARNPEAEEKLKKYVYIGAGLAEAMGLFSFVLAMLLIFV 72 (73)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 06999997799997343664199999999999865932889899999999999999999999999999971
No 5
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.95 E-value=7.7e-28 Score=160.09 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02359999999999999999874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 14 ANGYYSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 14 ~~~~~a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
++..+..+.++||||+++++.+|||+|||+++++++|+++||||+++++++++++|+|++|+++||||||+|+|+|+
T Consensus 2 d~~~~v~~~~~igAGla~i~~iG~giG~G~a~gkA~eavaRqPea~~~I~~~milG~A~aEstaIY~LviAliLlFa 78 (79)
T PRK13469 2 DSKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMILGAALAEATAIYGLVIAIILLFK 78 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77899999999999999997123257498999999999966914654089999999999999989999999999956
No 6
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.95 E-value=2e-27 Score=158.01 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3023599999999999999-998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r 13 AANGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91)
Q Consensus 13 a~~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91)
.-.+....++|+||||+++ +|.+|||+|+|+++++++++++||||.+++++++|++|+|++|+++||||||+++|+|++
T Consensus 6 ~~~~~li~a~s~igAGlamgigaIGPgiGeG~aa~~A~eaiarqPe~~g~I~~tm~lg~A~~Est~IY~lVVAliLlFV~ 85 (85)
T PRK13471 6 SLADALILMGKAIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLVL 85 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999999999830266400879999999998759055221899999999999997799999999999869
No 7
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.92 E-value=5.7e-25 Score=145.61 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 15 NGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 15 ~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
+-.|..+++.++||+++ +|.+|||+|+|++.++++|+++||||++++++++|++|.|++|+++||||||+++|+|+
T Consensus 2 ~~~~i~~~Sii~AGla~gigaiGpgiGeG~aa~~A~e~iaRqPea~~~I~~Tm~ig~A~~Es~aIY~lVValILlFa 78 (86)
T TIGR03322 2 SLTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08899999999999999998305324587999999999874942002049999999999999999999999999985
No 8
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.92 E-value=1.2e-24 Score=144.07 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 17 YYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 17 ~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
.|..+++.++||+++ +|.+|||+|+|++.++++|+++||||++++++++|++|.|+.|+++||||||+++|+|+
T Consensus 3 ~~i~~~Sii~Agla~gigaiGp~iG~G~a~~~A~e~iaRqPea~g~i~~tm~iglA~iEs~~IYalVialILlFa 77 (82)
T PRK13468 3 TLIAVVSIATAGLTVSIGAIGPALAEGRAVAAALDAIAQQPDASGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 599999999999999998304235587999999999865930102139999999999999999999999999970
No 9
>PRK13470 consensus
Probab=99.91 E-value=1.3e-24 Score=143.86 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 15 NGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 15 ~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
+-.|..+++.+|||+++ +|.+|||+|+|++.++++|+++||||++++++++|++|.|++|+++||||||+++|+|+
T Consensus 3 ~~~~i~~aSii~Agla~gigaiGp~iG~G~aa~~A~e~iaRqPea~g~i~~tm~iglA~iEs~~IY~lVvalILlFa 79 (88)
T PRK13470 3 SLTLIAVASIITAGLTIAIGSIGPALGEGRAVATALSALAQQPDASATITRTLFVGLAMIESTAIYCFVVSMILIFA 79 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15699999999999999998414402276999999999873942003029999999999999999999999999986
No 10
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.91 E-value=4.2e-24 Score=141.24 Aligned_cols=75 Identities=27% Similarity=0.303 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 16 GYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 16 ~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
..+..+++.+++|+++ ++.+|||+|+|++.++++|+++||||++++++++|++|.|++|+++||+||++++|+|+
T Consensus 2 ~~ii~a~s~i~Agl~~glaaiG~giG~G~a~~~a~E~iaRqPea~g~i~~tm~lg~A~~Es~~Iy~lVialillFa 77 (81)
T PRK07354 2 DSITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 2799999999999999998504313386999999999972942002159999999999999999999999999945
No 11
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.90 E-value=6.7e-24 Score=140.21 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 17 YYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 17 ~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
-...+++.+++|+++ ++.+|+|+|+|++.++++|+++||||++++++++|++|.|++|+++||+||++++|+|+
T Consensus 3 ~iv~~~s~l~Agl~~glaaiG~giG~G~a~~~a~e~iaRqPea~g~i~~tm~ig~A~iEs~~Iy~lvialillFA 77 (81)
T CHL00061 3 PLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 399999999999999998313246587999999999874920102169999999999999999999999999953
No 12
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.86 E-value=2.4e-21 Score=127.30 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=78.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998753023----599999999999999-9987478999999999999982378789879999999999999999999
Q gi|254781087|r 6 MEAATFAAANG----YYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFL 80 (91)
Q Consensus 6 ~~~~~~~a~~~----~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfa 80 (91)
+....|++++. +|-.+.+.+++|+.+ ++.+|+++|+|+..++++++++|||+..++++++|+++.|+.|+..|||
T Consensus 11 ~a~~Afa~e~~~~~~~~I~a~SilaaGl~~gl~AiG~aiG~G~aa~~ai~g~ARnP~~~~kl~tTmfi~LAmIEa~~IY~ 90 (105)
T PRK08482 11 LAGVAFAADGGMGGMDMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYA 90 (105)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998760478633789999999999999999973325556588999999874298510117999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999970
Q gi|254781087|r 81 LLVVMLLLFV 90 (91)
Q Consensus 81 lviA~lllFa 90 (91)
|||+++++|+
T Consensus 91 lVialillfA 100 (105)
T PRK08482 91 LVIALIALYA 100 (105)
T ss_pred HHHHHHHHHC
T ss_conf 9999999972
No 13
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.84 E-value=5.9e-21 Score=125.36 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999987478999999999999982378789879999999999999999999999999
Q gi|254781087|r 20 LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVML 86 (91)
Q Consensus 20 ~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~l 86 (91)
..-..||.|+++| |||+|+|+++++.+|+++||||++++++++|+||+|++|+++||++|++|+
T Consensus 16 ~~i~~igyGLaaI---GpGIGiG~i~gk~ieg~ARQPE~~g~lrt~mflG~A~~EALaLiGlV~~fl 79 (80)
T PRK07874 16 TGLGAVGYGLAAI---GPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred CCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6658877778860---641358999999999996485677659999999999999999999999983
No 14
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.78 E-value=1.6e-18 Score=113.12 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999-998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r 20 LAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91)
Q Consensus 20 ~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91)
....++++|+++ ++.+|+++|+|++.++++++++||||+++++|+.++++.++.|+++||+|+++|+++|+.
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4699999999999999989999999999999999829006663899999999999999999999999998156
No 15
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.77 E-value=4.2e-18 Score=110.93 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 599999999999999-998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r 17 YYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91)
Q Consensus 17 ~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91)
+...+.++|++|+.. ++.+|+++|+|.+-+|++|+++||||.+++++++|+++.++.|+..+++++++|+++|+.
T Consensus 2 ~~~~~~~~iaagi~iglaAlGaaiG~g~l~~k~lEg~ARQPEl~~~L~t~mFi~~gLieA~piI~v~ia~~l~Fan 77 (78)
T PRK06876 2 ETIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIVAGLVDAVPMIGVGIALLFAFAN 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999999999888764889999999998719406778999999999999998999999999966048
No 16
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.74 E-value=1.2e-17 Score=108.62 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 17 YYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 17 ~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
....++..||+|+++ .+.+|+|||+|.+-++++|+++||||++++++++++|..++.|+..++.++++++++|+
T Consensus 3 ~ii~A~a~ig~Gl~~gl~aIGagIG~Gl~~~~~iEGiARQPEa~~~L~t~~fIs~gL~Ea~~~I~lafal~~lfA 77 (81)
T PRK05880 3 PTIAAGALIGGGLIMAGGAIGAGIGDGIAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 389999999989998754540022256898899999861823432478999999999999999999999999935
No 17
>TIGR01260 ATP_synt_c ATP synthase F0, C subunit; InterPro: IPR005953 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit C (also called subunit 9, or proteolipid) found in the F0 complex of F-ATPases from bacterial plasma membranes and chloroplast thylakoid membranes. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=99.66 E-value=7.4e-17 Score=104.65 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 34 MGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 34 ~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
.+|+++|+|.+.+|++|+.+||||++++++++|+++.++.|++.+++++++++++|+
T Consensus 2 aiG~a~G~g~~~gK~lEs~ARQPe~~~~l~~~mfi~~gl~da~p~~~vviaL~l~FA 58 (58)
T TIGR01260 2 AIGAAIGFGILGGKFLESAARQPELAGQLRTTMFIVAGLVDAVPIIAVVIALILLFA 58 (58)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 620468888888766510236834430257889998899988889999999998619
No 18
>pfam00137 ATP-synt_C ATP synthase subunit C.
Probab=99.66 E-value=5.5e-16 Score=100.25 Aligned_cols=64 Identities=27% Similarity=0.351 Sum_probs=62.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 23 KYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 23 k~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
+++|+|+++ ++.+|+|+|+|++.++.+++++|||| +|++++++.++.|+.+||+|+++++++|+
T Consensus 2 ~~lgagla~gl~~~gagig~G~~~~~~~~~~ar~Pe----~~~~~~i~~al~E~~~iyglvia~ll~~~ 66 (66)
T pfam00137 2 AALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPE----LFGKMLIGAALAEALAIYGLVIALLLLFA 66 (66)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 057889999998677899999998999999872827----88747899999999999999999999869
No 19
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.38 E-value=1.8e-12 Score=82.50 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999874789999999999999823787898799999999999999999999999999
Q gi|254781087|r 23 KYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLL 87 (91)
Q Consensus 23 k~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~ll 87 (91)
..+|-|+|++ |+++|+|.+.++.+++++||||..+++++.|++|.|++|.+....|.++|++
T Consensus 4 ~~lglglA~~---GvsigeGllv~~~~ks~ARQPe~~~~L~~lM~lGiAFiEgtfFv~la~~Fi~ 65 (66)
T PRK13466 4 GAIAIGLAAL---GAAIGDGLIVSNFLQAVARQPELEGKLRGSMFMGIAFVEGTFFIALAMAFLF 65 (66)
T ss_pred HHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8989999983---6314444888879999862976899999999999999998899999999971
No 20
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.36 E-value=7.9e-12 Score=79.28 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 19 SLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 19 a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
..+...|++|+-. ++.+|+++|.|..-+|++|+++||||..+.+++.+++=..+.|+..+.+..+++.++|+
T Consensus 11 iq~~taia~~i~igl~AlGtaiG~GllggKfLEg~ARQPEl~p~Lq~kmFi~aGLiDA~~mI~vgial~~~FA 83 (101)
T PRK13464 11 LNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9989999999999999998788898873488877513823689999999999999988899999999999980
No 21
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=98.90 E-value=8.2e-10 Score=69.10 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 753023599999999999999-9987478999999999999982378789879999999999999999999999999997
Q gi|254781087|r 11 FAAANGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF 89 (91)
Q Consensus 11 ~~a~~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF 89 (91)
.+..+.+..-+.|+||+|+++ ++.+|+|+.+|.+-+..+-.++.+|| +|.+.++-.++.|.++||.++++++++|
T Consensus 23 qa~~~~~~~~~~~~iGAgLavGLA~iGaG~AvG~~gaAaig~iaE~~e----~fg~~Lifv~laEgIaiyGlliaiLilf 98 (101)
T PRK06251 23 QAPGDTSQGFAGINIGAGLAVGLAAIGAGVAVGMAAAAGIGVLTERRD----MFGTVLIFVAIGEGIAVYGILFAVLMLF 98 (101)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH----HHCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 287754242003344334888888850013200002756634303746----5174644431256899999999999995
Q ss_pred HC
Q ss_conf 09
Q gi|254781087|r 90 VI 91 (91)
Q Consensus 90 av 91 (91)
..
T Consensus 99 ~~ 100 (101)
T PRK06251 99 GK 100 (101)
T ss_pred CC
T ss_conf 46
No 22
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=98.84 E-value=1.2e-08 Score=63.13 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999874789999999999999823787898799999999999999999999999999
Q gi|254781087|r 23 KYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLL 87 (91)
Q Consensus 23 k~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~ll 87 (91)
+++|-++|++ |+.+|+|...++...+.+||||.-+++++-|++|.|+.|-+=.--|+++|++
T Consensus 4 ~~l~L~lAc~---GVSigEG~lmanl~ksaaRQPem~~~l~slm~lGvAFiEGTFFVtla~sfii 65 (66)
T PRK13467 4 TILALALACM---GVSLGEGFLMANLFKAAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 1999989994---4027776999989998634966899999999877667301039998889850
No 23
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=98.73 E-value=1.8e-07 Score=57.22 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3023599999999999999-998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r 13 AANGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91)
Q Consensus 13 a~~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91)
..+-++..+.-++++|+.. +... ++++||.+.++.+..++||||. |+..++-.++.|+-+||+|++++|++..+
T Consensus 85 ~~~~~~~~g~~~~~AgLpigl~Gl-Sai~QG~~aaagi~~~ak~p~~----~~k~ii~aamvETyAIlgllisiLll~~i 159 (159)
T PRK08344 85 PTTENLIKSAILFGAGLLVGLTGL-SAIPQGIIASSGIGAVSKNPKT----FTQNLIFAAMAETMAIFGLVGAIILIMSL 159 (159)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 411359999999999899999999-8999999999999999559586----51466899999999999999999998609
No 24
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=98.64 E-value=4.4e-07 Score=55.29 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 023599999999999999-9987478999999999999982378789879999999999999999999999999997
Q gi|254781087|r 14 ANGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF 89 (91)
Q Consensus 14 ~~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF 89 (91)
.+-++..+.-.+++|+.+ +...-+|+.||.+..+.++..+|||| +|.-+++=.++.|+.+||+|+++++++-
T Consensus 80 ~~~s~~~G~~~l~aGL~vGl~gl~Sgi~qG~v~aagi~~~ak~p~----~f~~~ii~~~~vE~~ai~glivslll~~ 152 (155)
T PRK06558 80 PELSLAQGLAYFAACLPIAIVGLFSAIHQGKVAAAGIQILAKRPE----HFTKGIILAAMVETYAILAFVVSFLLLN 152 (155)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 787789899999977999999999999999998999999971948----9999999999999999999999999860
No 25
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=98.40 E-value=4.8e-07 Score=55.10 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=40.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999-998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r 22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91)
Q Consensus 22 ak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91)
-..+|||+++ +.. -+++|||++.++-+.+++|||.. |+..++-.++.|+.+||.|+++++++|.+
T Consensus 146 ~~a~gAGlavGlaG-ls~igQGi~Aa~gi~a~akn~~~----fgk~~vfsvm~ET~AI~Glliailil~~i 211 (213)
T PRK06271 146 IAALGAGLAVGFAG-LSGIGQGITAAGAIGATARDPDA----MGKGLVLAVMPETFAIFGLLIAILIMLGI 211 (213)
T ss_pred HHHHCCCCEECCCC-CCCCCCHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99862561011112-46445105653004666448012----20456666447889999999999999883
No 26
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=98.34 E-value=2.7e-07 Score=56.36 Aligned_cols=64 Identities=25% Similarity=0.320 Sum_probs=41.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 22 ak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
..++++|++. +.. .+++|||.+.++.+..+++.||. |...++--++.|+-+||+|+|++|+++-
T Consensus 72 ~a~l~Agl~ig~~G-~S~igQGiaAaagig~va~~p~~----fgk~~ifs~lpET~AIyglLisIL~l~g 136 (213)
T PRK06271 72 WAMLAAGLATGLAG-LSAIGQGIASSAGLGAVAEDDGI----FGKAMVFSVLPETQAIYGLLVAILLLVG 136 (213)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHH----HHHHHEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 99997102465654-41553206876311453158888----4321110104348999999999999998
No 27
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=98.14 E-value=4.3e-06 Score=50.33 Aligned_cols=64 Identities=8% Similarity=0.095 Sum_probs=58.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-9987478999999999999982378789879999999999999999999999999997
Q gi|254781087|r 22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF 89 (91)
Q Consensus 22 ak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF 89 (91)
-..+|+++++ ++.+|+++|+|.+-....-.+.+|||. |...++=.++-|+-+||.|+++|+++.
T Consensus 6 ~a~lGaalAvglaGiGSa~GvGiaG~AaaG~~~Edp~k----Fgk~LiLq~LPgTQgiYGfli~flil~ 70 (159)
T PRK08344 6 YVSLGMALGAGIAGAASSFGVGIAGAAAAGAVAEDEKN----FRNALILEGLPMTQSIYGLITLFLIGM 70 (159)
T ss_pred HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHH----HHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99989999999732302332105757764576528889----978999985855012899999999999
No 28
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=98.03 E-value=4.9e-05 Score=44.99 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 20 LAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 20 ~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
..-.++|+.+++ ++.+|++.|+|..-......+.++||. |...++=.++.++.+||.|+++++++..
T Consensus 10 ~~la~lG~a~a~~ls~iGSa~G~g~aG~a~~g~~~e~P~~----fgk~iil~~lpgtqgIYG~vi~~li~~~ 77 (155)
T PRK06558 10 AFFAALGVALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEK----FGKALILQLLPGTQGLYGFVIGILIWMK 77 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999989999999942049881899999889898448588----8999999996646899999999999851
No 29
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=98.00 E-value=6.6e-05 Score=44.34 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999999999-998747899999999999998237878987999999999999999999999999999
Q gi|254781087|r 17 YYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLL 88 (91)
Q Consensus 17 ~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lll 88 (91)
+.+....++++|+.. +...-+++-||.+..+.++..+++||. |...++=.++.|+-+||+|+++|++.
T Consensus 73 ~~~~g~~~~~~gl~~G~~~l~Sai~QGk~aA~gI~~~ak~pe~----fgk~ii~a~~vEtyAilafv~slll~ 141 (141)
T PRK09621 73 GKVSAVSGIAIGISVGIALLLSAIMQGKCCVSAIQAYARSSAI----YGKSFASIGIVESFALFAFVFALLLF 141 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3111799999899999999999999999999999998119215----41688999999999999999999869
No 30
>KOG0232 consensus
Probab=97.00 E-value=0.00046 Score=40.06 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 19 SLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 19 a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
-.+...+.+|+.. +...++|..+|.+--..+.+.+|||.. |.-++|=.-+.|.+|||.|++++.|.++
T Consensus 85 ~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~----fv~~iLiLif~evlGLygLiva~~l~~~ 153 (156)
T KOG0232 85 FTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRL----FVGMILILIFAEVLGLYGLIVALALLTV 153 (156)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56899999989862212577867674464100444229614----2127999999999889999999860577
No 31
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=96.83 E-value=0.00066 Score=39.29 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=55.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 22 ak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
-.++|+.+++ ++.+|+++|.|..--...-.+.||||.-++ .+.=.++--+-+||.+++.|++.+.
T Consensus 4 l~~~G~alav~LsgiGSa~G~giaG~Aa~G~~~e~p~~fgk----~l~l~~LPgTQglYGfvi~fl~~~~ 69 (141)
T PRK09621 4 LSVVGPVLAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGK----IIGLSAMPSSQSIYGLIFMLLLNDA 69 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89889999999955068874578889887898718453564----5554317751429999999999735
No 32
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=96.58 E-value=0.038 Score=30.40 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=56.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 22 ak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
..++|.|+.. ++..-+++=||...+..+++.+.+|+ .|.+.+.-..+.|+.+||.+|-+++--|+
T Consensus 79 ~~~lgiG~~~Glai~~SA~~QGka~A~a~dA~~etgk----gfg~yl~~lGivEtvALFv~VF~ll~~~~ 144 (144)
T PRK06649 79 WLLLGAGFGGGLAIAASAFAQGRAAAGACDAFAETGK----GFATYLLVLGLIESVALFVMVFLMIFKFV 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999998999999999811667888898876643----69999999999999999999999998429
No 33
>KOG0233 consensus
Probab=71.93 E-value=6.2 Score=19.24 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999-99874789999999999999823787898799999999999999999999999999
Q gi|254781087|r 18 YSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLL 87 (91)
Q Consensus 18 ~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~ll 87 (91)
+......-++|+.. +--.--|+-+|++-+.+--+-+.||..=-|+.-.-+.|. ++|||++++.+++
T Consensus 122 ~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgS----aiGLfGlIvgi~m 188 (196)
T KOG0233 122 LYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGS----AIGLFGLIVGIVM 188 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEEHHHHHHH----HHHHHHHHHHHHC
T ss_conf 222477763367888999874634400050556541568631542203455777----8889999998621
No 34
>pfam06716 DUF1201 Protein of unknown function (DUF1201). This family consists of several Sugar beet yellow virus (SBYV) putative membrane-binding proteins of around 54 residues in length. The function of this family is unknown.
Probab=48.47 E-value=22 Score=16.50 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999997
Q gi|254781087|r 61 AHKTEVLIFAVIAESLGLFLLLVVMLLLF 89 (91)
Q Consensus 61 ~l~~~~ilG~Al~Ea~glfalviA~lllF 89 (91)
-+++|.++.|.+.--+-+|||++-+-..|
T Consensus 4 vlrsylllafgfliclflfclvvfiwfvy 32 (54)
T pfam06716 4 VLRSYLLLAFGFLICLFLFCLVVFIWFVY 32 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999
No 35
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=42.69 E-value=27 Score=16.01 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5302359999999999999999874789
Q gi|254781087|r 12 AAANGYYSLAAKYVAVGMACLGMGLVAL 39 (91)
Q Consensus 12 ~a~~~~~a~aak~IGAGlA~ig~~G~gi 39 (91)
.-..++|...+|.-|+|++.+|.+|=-|
T Consensus 23 KP~~~Ef~~i~kvtglgi~liG~iGfiI 50 (59)
T PRK09400 23 KPSREEFLTIAKVTGLGILLIGLIGFII 50 (59)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998999999999999999999999999
No 36
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=42.56 E-value=27 Score=16.00 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 530235999999999999999987478999
Q gi|254781087|r 12 AAANGYYSLAAKYVAVGMACLGMGLVALAV 41 (91)
Q Consensus 12 ~a~~~~~a~aak~IGAGlA~ig~~G~giGi 41 (91)
.-.-++|...+|.-|.|+..+|.+|=-|-+
T Consensus 27 KP~~eEy~~~aKi~~~Gi~liG~IGfiI~l 56 (65)
T COG2443 27 KPDWEEYSKIAKITGLGILLIGIIGFIIYL 56 (65)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998999999999999899999999999999
No 37
>KOG2887 consensus
Probab=42.34 E-value=27 Score=15.98 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7878987999999999999999999999999999709
Q gi|254781087|r 55 NPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91)
Q Consensus 55 NP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91)
|++.-+--+++-+.+|+..=+.|++|..++.+++++.
T Consensus 34 ~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~ 70 (175)
T KOG2887 34 QESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVL 70 (175)
T ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0543658589999999999999999999999998631
No 38
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic; InterPro: IPR008158 This family is the protein translocase SEC61 complex gamma subunit of the archaeal and eukaryotic type. It does not hit bacterial SecE proteins. Sec61 is required for protein translocation in the endoplasmic reticulum. The Sec61 complex (eukaryotes) or SecY complex (prokaryotes) forms a conserved heterotrimeric integral membrane protein complex and forms a protein-conducting channel that allows polypeptides to be transferred across (or integrated into) the endoplasmic reticulum (eukaryotes) or across the cytoplasmic membrane (prokaryotes) , . This complex is itself a part of a larger translocase heterotrimeric complex composed of alpha, beta and gamma subunits. The channel is a passive conduit for polypeptides. It therefore has to associate with other components that provide a driving force. The partner proteins in bacteria and eukaryotes differ. In bacteria, the translocase complex comprises 7 proteins , including a chaperone protein (SecB) an ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD) and SecF. The SecA ATPase interacts dynamically with the SecYEG integral membrane components to drive the transmembrane movement of newly synthesized preproteins . In yeast (and probably in all eukaryotes), the full translocase comprises another membrane protein subcomplex (the tetrameric Sec62/63p complex), and the lumenal protein BiP, a member of the Hsp70 family of ATPases. BiP promotes translocation by acting as a molecular ratchet, preventing the polypeptide chain from sliding back into the cytosol .; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane.
Probab=34.20 E-value=37 Score=15.29 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 530235999999999999999987478999
Q gi|254781087|r 12 AAANGYYSLAAKYVAVGMACLGMGLVALAV 41 (91)
Q Consensus 12 ~a~~~~~a~aak~IGAGlA~ig~~G~giGi 41 (91)
.-+-++|..-+|..|+|+-.+|.+|=-|-+
T Consensus 22 KP~~~EY~~v~Kv~~~g~~~vG~iGf~I~i 51 (61)
T TIGR00327 22 KPDKEEYLKVAKVTGIGIIIVGIIGFIIKI 51 (61)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998788999999999999999899999999
No 39
>pfam09472 MtrF Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF). Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C terminal region of what appears to be a fusion of the MtrA and MtrF proteins. The function of these proteins is unknown, though it is likely
Probab=24.90 E-value=56 Score=14.41 Aligned_cols=29 Identities=14% Similarity=-0.056 Sum_probs=22.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99823787898799999999999999999
Q gi|254781087|r 50 SGAFRNPCAASAHKTEVLIFAVIAESLGL 78 (91)
Q Consensus 50 ~~vaRNP~~~~~l~~~~ilG~Al~Ea~gl 78 (91)
+=++||-..++.+.++-++||+.---.++
T Consensus 25 qLiaR~~kL~SGv~~~~~~G~~~G~~~Al 53 (64)
T pfam09472 25 QLIARNQKLESGVIATGILGFAIGFVFAV 53 (64)
T ss_pred HHHHHHCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99973032256652000499999999999
No 40
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=22.25 E-value=51 Score=14.61 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHCCHH
Q ss_conf 9999999999823787
Q gi|254781087|r 42 SNIFTTYLSGAFRNPC 57 (91)
Q Consensus 42 G~if~~~i~~vaRNP~ 57 (91)
-.+|..+++.++|||-
T Consensus 71 c~AF~eaV~~vA~nP~ 86 (87)
T cd07050 71 CNAFAEAVLEIAANPR 86 (87)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999984879
Done!