Query         gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs    104 out of 279
Neff          3.8 
Searched_HMMs 23785
Date          Wed Jun  1 01:07:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781087.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2xok_K ATP synthase subunit 9, 100.0 1.3E-30 5.3E-35  173.1   3.6   74   18-91      3-76  (76)
  2 2wgm_A ATP synthase subunit C,  99.9 8.4E-27 3.5E-31  153.8  10.0   76   15-90      6-81  (89)
  3 2xnd_J ATP synthase lipid-bind  99.9 5.7E-29 2.4E-33  164.7  -3.4   71   19-89      2-72  (72)
  4 2xqu_A C15_RING, ATP synthase   99.9 6.4E-25 2.7E-29  144.3  10.0   76   15-90      2-78  (82)
  5 1a91_A F1FO ATPase subunit C;   99.9 4.5E-24 1.9E-28  140.0   9.3   76   16-91      2-78  (79)
  6 2x2v_A ATP synthase subunit C;  99.9 4.7E-23   2E-27  134.9   9.9   67   23-89      2-69  (69)
  7 1wu0_A ATP synthase C chain; A  99.9 3.5E-22 1.5E-26  130.4   8.4   68   22-89      3-71  (72)
  8 2bl2_A V-type sodium ATP synth  99.0 2.1E-09 8.7E-14   66.0   9.1   73   14-90     82-155 (156)
  9 2bl2_A V-type sodium ATP synth  98.4 1.1E-06 4.8E-11   52.1   8.6   66   21-90     13-79  (156)
 10 3mp7_B Preprotein translocase   22.5      38  0.0016   14.2   3.3   29   12-40     24-52  (61)

No 1  
>2xok_K ATP synthase subunit 9, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} PDB: 2wpd_J*
Probab=99.96  E-value=1.3e-30  Score=173.06  Aligned_cols=74  Identities=30%  Similarity=0.541  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r   18 YSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI   91 (91)
Q Consensus        18 ~a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav   91 (91)
                      ...++|+||+|+++++++|+|+|+|++|++++++++||||+++++|+|++||+|++|+++|||||++|+|+|+|
T Consensus         3 ~~~aak~iGaGlA~ig~~G~giG~G~vf~~~i~~iaRnP~a~~~l~~~~~lG~Al~Ea~~i~alvvA~lllFav   76 (76)
T 2xok_K            3 LVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV   76 (76)
T ss_dssp             CTTHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHTSCSCTTTTHHHHTTHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             89999999789999980117886999999999998638668986999999999999999999999999998609


No 2  
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.94  E-value=8.4e-27  Score=153.78  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2359999999999999999874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r   15 NGYYSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV   90 (91)
Q Consensus        15 ~~~~a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa   90 (91)
                      .+.+..++|.||+|+++++.+|+|+|+|+++++++|+++||||+++++++++++|+|++|+++||+|+|+++++|+
T Consensus         6 ~~~iv~~~~~iGaGla~~g~~G~giG~G~~~~~a~e~iaRnPea~g~i~~~m~lg~Al~Ea~~iy~lvia~illFa   81 (89)
T 2wgm_A            6 AKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA   81 (89)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999701699899999999999865925898499999999999999999999999999988


No 3  
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.93  E-value=5.7e-29  Score=164.73  Aligned_cols=71  Identities=28%  Similarity=0.517  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999987478999999999999982378789879999999999999999999999999997
Q gi|254781087|r   19 SLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF   89 (91)
Q Consensus        19 a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF   89 (91)
                      +.++|+||+|+++++++|+|+|+|++|++++|+++||||+++++|+|+++|+|++|+++||+||++|+|+|
T Consensus         2 ~~aak~iGaGlA~ig~~G~giGiG~vf~~~i~~vaRnPe~~~~i~~~~~lG~Al~Ea~ai~alvva~lllF   72 (72)
T 2xnd_J            2 DTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF   72 (72)
T ss_dssp             TTTTTTTTTTGGGGGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             06899997999999800168869999999999986695689869999999999999999999999999869


No 4  
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2wie_A* 2xqt_A* 2w5j_A
Probab=99.92  E-value=6.4e-25  Score=144.27  Aligned_cols=76  Identities=24%  Similarity=0.322  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r   15 NGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV   90 (91)
Q Consensus        15 ~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa   90 (91)
                      +.++..+++.+|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++|++|+|++|+++||+|+++++++|+
T Consensus         2 e~~i~~a~~~i~agla~gl~a~G~giG~G~~~~~a~e~iaRqPe~~~~l~~~m~ig~al~Ea~~iy~lvialillFa   78 (82)
T 2xqu_A            2 ESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA   78 (82)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             52899999999999999998666899899999999999980934654179999999999999999999999999955


No 5  
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.90  E-value=4.5e-24  Score=140.01  Aligned_cols=76  Identities=16%  Similarity=0.276  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3599999999999999-998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r   16 GYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI   91 (91)
Q Consensus        16 ~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav   91 (91)
                      ++......++|+|+++ ++.+|+|+|+|++++|++|+++||||+++++++++++|++++|+++||+++++|+++|++
T Consensus         2 e~l~~~~~~l~agl~~glaaiG~giG~G~~~~k~le~~aRqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa~   78 (79)
T 1a91_A            2 ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             14998999999999999999998997999999999999749217772999999999999999999999999999980


No 6  
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.89  E-value=4.7e-23  Score=134.86  Aligned_cols=67  Identities=24%  Similarity=0.391  Sum_probs=65.6

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999-9987478999999999999982378789879999999999999999999999999997
Q gi|254781087|r   23 KYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF   89 (91)
Q Consensus        23 k~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF   89 (91)
                      +++|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++|++|+|++|+++||+++++|+++|
T Consensus         2 ~~lgagl~~glaaiG~giG~G~~~~~a~e~iaRqPe~~g~l~~~m~ig~al~Ea~~i~~lvia~lllF   69 (69)
T 2x2v_A            2 AFLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             28899999999988899989899999999997690277619999999999999999999999999979


No 7  
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.86  E-value=3.5e-22  Score=130.44  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=65.7

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999-9987478999999999999982378789879999999999999999999999999997
Q gi|254781087|r   22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF   89 (91)
Q Consensus        22 ak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF   89 (91)
                      .+++|+|+++ ++.+|+|+|+|+++++++|+++||||+++++++++++|+|++|+++||++|++|++++
T Consensus         3 l~~l~agl~~glaaiG~giG~G~~~~~a~e~iaRqPE~~g~l~~~m~ig~al~Ea~~i~~lvia~ill~   71 (72)
T 1wu0_A            3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG   71 (72)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             689999999999987879879999999999998391378769999999999999999999999999955


No 8  
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, hydrogen ION transport, hydrolase; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A*
Probab=98.99  E-value=2.1e-09  Score=65.97  Aligned_cols=73  Identities=14%  Similarity=0.242  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             023599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r   14 ANGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV   90 (91)
Q Consensus        14 ~~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa   90 (91)
                      .+-+...+..++++|+++ ++...+|+.||.+-++.+.+.+|||+    +|..+++-.++.|+.+||+|++++++++.
T Consensus        82 ~~~s~~~g~~~l~aGL~vGl~~l~Sgi~qG~~~aagi~a~a~~p~----~f~~~ii~~i~~E~~al~glivalll~~~  155 (156)
T 2bl2_A           82 SDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPE----HATKGIIFAAMVETYAILGFVISFLLVLN  155 (156)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             764201389999988999999987677876870999998851979----99999999999999999999999998703


No 9  
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, hydrogen ION transport, hydrolase; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A*
Probab=98.42  E-value=1.1e-06  Score=52.13  Aligned_cols=66  Identities=15%  Similarity=0.134  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r   21 AAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV   90 (91)
Q Consensus        21 aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa   90 (91)
                      .-.++|+++++ +..+|++.|++..-........|+||..    ...++-.++.|+.+||+|+++++++..
T Consensus        13 ~~a~lG~alav~ls~iGSa~G~~~aG~a~~g~~~~~p~~~----~k~li~~ilpgtq~IYGlIiaili~~~   79 (156)
T 2bl2_A           13 VFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKF----GQALILQLLPGTQGLYGFVIAFLIFIN   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999788999989999998888987080689----999999998657899999999999963


No 10 
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=22.50  E-value=38  Score=14.16  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53023599999999999999998747899
Q gi|254781087|r   12 AAANGYYSLAAKYVAVGMACLGMGLVALA   40 (91)
Q Consensus        12 ~a~~~~~a~aak~IGAGlA~ig~~G~giG   40 (91)
                      .-..++|...+|..|.|+..+|.+|=-|-
T Consensus        24 KP~~~Ef~~i~k~~~iG~~i~G~iGf~Ik   52 (61)
T 3mp7_B           24 KPNWATYKRAAKITGLGIILIGLIGMLIR   52 (61)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999


Done!