Query gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 91 No_of_seqs 104 out of 279 Neff 3.8 Searched_HMMs 23785 Date Wed Jun 1 01:07:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781087.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2xok_K ATP synthase subunit 9, 100.0 1.3E-30 5.3E-35 173.1 3.6 74 18-91 3-76 (76) 2 2wgm_A ATP synthase subunit C, 99.9 8.4E-27 3.5E-31 153.8 10.0 76 15-90 6-81 (89) 3 2xnd_J ATP synthase lipid-bind 99.9 5.7E-29 2.4E-33 164.7 -3.4 71 19-89 2-72 (72) 4 2xqu_A C15_RING, ATP synthase 99.9 6.4E-25 2.7E-29 144.3 10.0 76 15-90 2-78 (82) 5 1a91_A F1FO ATPase subunit C; 99.9 4.5E-24 1.9E-28 140.0 9.3 76 16-91 2-78 (79) 6 2x2v_A ATP synthase subunit C; 99.9 4.7E-23 2E-27 134.9 9.9 67 23-89 2-69 (69) 7 1wu0_A ATP synthase C chain; A 99.9 3.5E-22 1.5E-26 130.4 8.4 68 22-89 3-71 (72) 8 2bl2_A V-type sodium ATP synth 99.0 2.1E-09 8.7E-14 66.0 9.1 73 14-90 82-155 (156) 9 2bl2_A V-type sodium ATP synth 98.4 1.1E-06 4.8E-11 52.1 8.6 66 21-90 13-79 (156) 10 3mp7_B Preprotein translocase 22.5 38 0.0016 14.2 3.3 29 12-40 24-52 (61) No 1 >2xok_K ATP synthase subunit 9, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} PDB: 2wpd_J* Probab=99.96 E-value=1.3e-30 Score=173.06 Aligned_cols=74 Identities=30% Similarity=0.541 Sum_probs=71.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999998747899999999999998237878987999999999999999999999999999709 Q gi|254781087|r 18 YSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91) Q Consensus 18 ~a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91) ...++|+||+|+++++++|+|+|+|++|++++++++||||+++++|+|++||+|++|+++|||||++|+|+|+| T Consensus 3 ~~~aak~iGaGlA~ig~~G~giG~G~vf~~~i~~iaRnP~a~~~l~~~~~lG~Al~Ea~~i~alvvA~lllFav 76 (76) T 2xok_K 3 LVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV 76 (76) T ss_dssp CTTHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHTSCSCTTTTHHHHTTHHHHHHHHHHHHHHHHHHHTTC-- T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 89999999789999980117886999999999998638668986999999999999999999999999998609 No 2 >2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A* Probab=99.94 E-value=8.4e-27 Score=153.78 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=73.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2359999999999999999874789999999999999823787898799999999999999999999999999970 Q gi|254781087|r 15 NGYYSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91) Q Consensus 15 ~~~~a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91) .+.+..++|.||+|+++++.+|+|+|+|+++++++|+++||||+++++++++++|+|++|+++||+|+|+++++|+ T Consensus 6 ~~~iv~~~~~iGaGla~~g~~G~giG~G~~~~~a~e~iaRnPea~g~i~~~m~lg~Al~Ea~~iy~lvia~illFa 81 (89) T 2wgm_A 6 AKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA 81 (89) T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999701699899999999999865925898499999999999999999999999999988 No 3 >2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus} Probab=99.93 E-value=5.7e-29 Score=164.73 Aligned_cols=71 Identities=28% Similarity=0.517 Sum_probs=68.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999987478999999999999982378789879999999999999999999999999997 Q gi|254781087|r 19 SLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF 89 (91) Q Consensus 19 a~aak~IGAGlA~ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF 89 (91) +.++|+||+|+++++++|+|+|+|++|++++|+++||||+++++|+|+++|+|++|+++||+||++|+|+| T Consensus 2 ~~aak~iGaGlA~ig~~G~giGiG~vf~~~i~~vaRnPe~~~~i~~~~~lG~Al~Ea~ai~alvva~lllF 72 (72) T 2xnd_J 2 DTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72) T ss_dssp TTTTTTTTTTGGGGGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 06899997999999800168869999999999986695689869999999999999999999999999869 No 4 >2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2wie_A* 2xqt_A* 2w5j_A Probab=99.92 E-value=6.4e-25 Score=144.27 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=72.8 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23599999999999999-99874789999999999999823787898799999999999999999999999999970 Q gi|254781087|r 15 NGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91) Q Consensus 15 ~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91) +.++..+++.+|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++|++|+|++|+++||+|+++++++|+ T Consensus 2 e~~i~~a~~~i~agla~gl~a~G~giG~G~~~~~a~e~iaRqPe~~~~l~~~m~ig~al~Ea~~iy~lvialillFa 78 (82) T 2xqu_A 2 ESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA 78 (82) T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 52899999999999999998666899899999999999980934654179999999999999999999999999955 No 5 >1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A Probab=99.90 E-value=4.5e-24 Score=140.01 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=72.0 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 3599999999999999-998747899999999999998237878987999999999999999999999999999709 Q gi|254781087|r 16 GYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91) Q Consensus 16 ~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91) ++......++|+|+++ ++.+|+|+|+|++++|++|+++||||+++++++++++|++++|+++||+++++|+++|++ T Consensus 2 e~l~~~~~~l~agl~~glaaiG~giG~G~~~~k~le~~aRqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa~ 78 (79) T 1a91_A 2 ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 14998999999999999999998997999999999999749217772999999999999999999999999999980 No 6 >2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4} Probab=99.89 E-value=4.7e-23 Score=134.86 Aligned_cols=67 Identities=24% Similarity=0.391 Sum_probs=65.6 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999-9987478999999999999982378789879999999999999999999999999997 Q gi|254781087|r 23 KYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF 89 (91) Q Consensus 23 k~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF 89 (91) +++|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++|++|+|++|+++||+++++|+++| T Consensus 2 ~~lgagl~~glaaiG~giG~G~~~~~a~e~iaRqPe~~g~l~~~m~ig~al~Ea~~i~~lvia~lllF 69 (69) T 2x2v_A 2 AFLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 28899999999988899989899999999997690277619999999999999999999999999979 No 7 >1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP} Probab=99.86 E-value=3.5e-22 Score=130.44 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=65.7 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999-9987478999999999999982378789879999999999999999999999999997 Q gi|254781087|r 22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLF 89 (91) Q Consensus 22 ak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllF 89 (91) .+++|+|+++ ++.+|+|+|+|+++++++|+++||||+++++++++++|+|++|+++||++|++|++++ T Consensus 3 l~~l~agl~~glaaiG~giG~G~~~~~a~e~iaRqPE~~g~l~~~m~ig~al~Ea~~i~~lvia~ill~ 71 (72) T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 689999999999987879879999999999998391378769999999999999999999999999955 No 8 >2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, hydrogen ION transport, hydrolase; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* Probab=98.99 E-value=2.1e-09 Score=65.97 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=65.9 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 023599999999999999-99874789999999999999823787898799999999999999999999999999970 Q gi|254781087|r 14 ANGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91) Q Consensus 14 ~~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91) .+-+...+..++++|+++ ++...+|+.||.+-++.+.+.+|||+ +|..+++-.++.|+.+||+|++++++++. T Consensus 82 ~~~s~~~g~~~l~aGL~vGl~~l~Sgi~qG~~~aagi~a~a~~p~----~f~~~ii~~i~~E~~al~glivalll~~~ 155 (156) T 2bl2_A 82 SDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPE----HATKGIIFAAMVETYAILGFVISFLLVLN 155 (156) T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHTTHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 764201389999988999999987677876870999998851979----99999999999999999999999998703 No 9 >2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, hydrogen ION transport, hydrolase; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* Probab=98.42 E-value=1.1e-06 Score=52.13 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=58.6 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999-99874789999999999999823787898799999999999999999999999999970 Q gi|254781087|r 21 AAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91) Q Consensus 21 aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91) .-.++|+++++ +..+|++.|++..-........|+||.. ...++-.++.|+.+||+|+++++++.. T Consensus 13 ~~a~lG~alav~ls~iGSa~G~~~aG~a~~g~~~~~p~~~----~k~li~~ilpgtq~IYGlIiaili~~~ 79 (156) T 2bl2_A 13 VFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKF----GQALILQLLPGTQGLYGFVIAFLIFIN 79 (156) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHGGGHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999788999989999998888987080689----999999998657899999999999963 No 10 >3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Probab=22.50 E-value=38 Score=14.16 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 53023599999999999999998747899 Q gi|254781087|r 12 AAANGYYSLAAKYVAVGMACLGMGLVALA 40 (91) Q Consensus 12 ~a~~~~~a~aak~IGAGlA~ig~~G~giG 40 (91) .-..++|...+|..|.|+..+|.+|=-|- T Consensus 24 KP~~~Ef~~i~k~~~iG~~i~G~iGf~Ik 52 (61) T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61) T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999 Done!