Query gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 91 No_of_seqs 104 out of 279 Neff 3.8 Searched_HMMs 13730 Date Wed Jun 1 11:24:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781087.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1c99a_ f.17.1.1 (A:) F1F0 ATP 99.9 5.3E-24 3.9E-28 138.4 10.8 76 16-91 2-78 (79) 2 d1rh5b_ f.23.28.1 (B:) Preprot 20.3 24 0.0018 13.9 3.3 27 13-39 18-44 (56) 3 d1gr0a1 c.2.1.3 (A:14-200,A:31 10.4 18 0.0013 14.5 -0.9 15 39-53 8-22 (243) 4 d2hkua2 a.121.1.1 (A:88-208) P 9.7 50 0.0036 12.3 5.2 39 36-74 16-54 (121) 5 d1or7c_ a.180.1.1 (C:) N-termi 8.5 56 0.0041 12.1 3.9 26 48-73 19-44 (66) 6 d1i2ta_ a.144.1.1 (A:) hyperpl 6.2 75 0.0054 11.5 1.1 13 54-66 16-28 (61) 7 d1q90m_ f.23.25.1 (M:) PetM su 5.5 82 0.006 11.3 3.1 23 25-47 6-28 (34) 8 d1utca1 a.118.1.4 (A:331-355) 5.0 90 0.0065 11.1 1.4 15 47-61 6-20 (26) 9 d1l7va_ f.22.1.1 (A:) ABC tran 4.8 92 0.0067 11.0 1.6 19 45-63 73-91 (324) 10 d2axti1 f.23.37.1 (I:1-35) Pho 4.6 56 0.0041 12.1 -0.7 14 44-57 20-33 (35) No 1 >d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Probab=99.90 E-value=5.3e-24 Score=138.41 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=72.1 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 3599999999999999-998747899999999999998237878987999999999999999999999999999709 Q gi|254781087|r 16 GYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91) Q Consensus 16 ~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91) ++......++++|+++ ++.+|+|+|+|+++++++|+++||||+++++++++++|++++|+++||+++++++++|++ T Consensus 2 e~~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa~ 78 (79) T d1c99a_ 2 ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 34888899999999999998787887999999999998559317776999999999999999999999999999980 No 2 >d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=20.26 E-value=24 Score=13.91 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 302359999999999999999874789 Q gi|254781087|r 13 AANGYYSLAAKYVAVGMACLGMGLVAL 39 (91) Q Consensus 13 a~~~~~a~aak~IGAGlA~ig~~G~gi 39 (91) -..+||..-++.-|.|+..+|.+|=-+ T Consensus 18 P~~~Ef~~ia~v~~iG~~i~G~IGf~I 44 (56) T d1rh5b_ 18 PTKDEYLAVAKVTALGISLLGIIGYII 44 (56) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 988999999999999999999999999 No 3 >d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=10.36 E-value=18 Score=14.54 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999982 Q gi|254781087|r 39 LAVSNIFTTYLSGAF 53 (91) Q Consensus 39 iGiG~if~~~i~~va 53 (91) +|+||.++++++|+- T Consensus 8 vGvGNcASslvqGie 22 (243) T d1gr0a1 8 VGVGNCASSLVQGVE 22 (243) T ss_dssp ECCSHHHHHHHHHHH T ss_pred ECCHHHHHHHHHHHH T ss_conf 803078999999999 No 4 >d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=9.74 E-value=50 Score=12.34 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 478999999999999982378789879999999999999 Q gi|254781087|r 36 LVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAE 74 (91) Q Consensus 36 G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~E 74 (91) |++---=-.|..++-...|||+.++.+.++.-+=+.=.| T Consensus 16 g~~apSv~lfa~Am~~~~rrpeLa~li~~tL~~Lh~~ge 54 (121) T d2hkua2 16 GPGAPSVELFTSAMLMTGRRSELRDLITDTLRTLHSSGE 54 (121) T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 568972899999999805770178899999999999688 No 5 >d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]} Probab=8.52 E-value=56 Score=12.07 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.7 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 99998237878987999999999999 Q gi|254781087|r 48 YLSGAFRNPCAASAHKTEVLIFAVIA 73 (91) Q Consensus 48 ~i~~vaRNP~~~~~l~~~~ilG~Al~ 73 (91) ++..+..||+.+..-.+|-++|-++- T Consensus 19 l~~~l~~d~e~~~~W~~Yhli~d~lr 44 (66) T d1or7c_ 19 LLNELAHNPEMQKTWESYHLIRDSMR 44 (66) T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 99998659999999999999999986 No 6 >d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]} Probab=6.18 E-value=75 Score=11.46 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=10.1 Q ss_pred CCHHHHHHHHHHH Q ss_conf 3787898799999 Q gi|254781087|r 54 RNPCAASAHKTEV 66 (91) Q Consensus 54 RNP~~~~~l~~~~ 66 (91) ++|+.+++|+..+ T Consensus 16 ~~p~~A~KITGML 28 (61) T d1i2ta_ 16 MQPAFASKITGML 28 (61) T ss_dssp HCGGGHHHHHHHH T ss_pred HCHHHHCCHHHHH T ss_conf 7800101056877 No 7 >d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=5.53 E-value=82 Score=11.25 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999987478999999999 Q gi|254781087|r 25 VAVGMACLGMGLVALAVSNIFTT 47 (91) Q Consensus 25 IGAGlA~ig~~G~giGiG~if~~ 47 (91) -|..+.|+|+.-.|+.+|++.-. T Consensus 6 agta~tmig~tl~glaigfvllr 28 (34) T d1q90m_ 6 AGTALTMVGMTLVGLAIGFVLLR 28 (34) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHEE T ss_conf 00349999899999988775002 No 8 >d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=4.98 E-value=90 Score=11.06 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=11.3 Q ss_pred HHHHHHHCCHHHHHH Q ss_conf 999998237878987 Q gi|254781087|r 47 TYLSGAFRNPCAASA 61 (91) Q Consensus 47 ~~i~~vaRNP~~~~~ 61 (91) -+++.+..||+.+-. T Consensus 6 pyi~~vlqnpdlalr 20 (26) T d1utca1 6 PYITNVLQNPDLALR 20 (26) T ss_dssp HHHHHTTCCHHHHHH T ss_pred HHHHHHCCCHHHHHH T ss_conf 436633138028898 No 9 >d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]} Probab=4.82 E-value=92 Score=11.00 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=12.7 Q ss_pred HHHHHHHHHCCHHHHHHHH Q ss_conf 9999999823787898799 Q gi|254781087|r 45 FTTYLSGAFRNPCAASAHK 63 (91) Q Consensus 45 f~~~i~~vaRNP~~~~~l~ 63 (91) .|..++.+.|||=+.+.+. T Consensus 73 sG~~lQ~~~rNpLA~P~il 91 (324) T d1l7va_ 73 SGAVMQALFENPLAEPGLL 91 (324) T ss_dssp HHHHHHHHHTCTTCCTTTT T ss_pred HHHHHHHHHCCCCCCCHHH T ss_conf 9999999817988783678 No 10 >d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]} Probab=4.59 E-value=56 Score=12.09 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=6.6 Q ss_pred HHHHHHHHHHCCHH Q ss_conf 99999999823787 Q gi|254781087|r 44 IFTTYLSGAFRNPC 57 (91) Q Consensus 44 if~~~i~~vaRNP~ 57 (91) +||=+-+--+|||. T Consensus 20 iFGFLSnDP~RnP~ 33 (35) T d2axti1 20 VFGFLSGDPARNPK 33 (35) T ss_dssp HHHHHTTCTTCSSC T ss_pred HHHHCCCCCCCCCC T ss_conf 98630589988989 Done!