Query gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs 104 out of 279
Neff 3.8
Searched_HMMs 13730
Date Wed Jun 1 11:24:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781087.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c99a_ f.17.1.1 (A:) F1F0 ATP 99.9 5.3E-24 3.9E-28 138.4 10.8 76 16-91 2-78 (79)
2 d1rh5b_ f.23.28.1 (B:) Preprot 20.3 24 0.0018 13.9 3.3 27 13-39 18-44 (56)
3 d1gr0a1 c.2.1.3 (A:14-200,A:31 10.4 18 0.0013 14.5 -0.9 15 39-53 8-22 (243)
4 d2hkua2 a.121.1.1 (A:88-208) P 9.7 50 0.0036 12.3 5.2 39 36-74 16-54 (121)
5 d1or7c_ a.180.1.1 (C:) N-termi 8.5 56 0.0041 12.1 3.9 26 48-73 19-44 (66)
6 d1i2ta_ a.144.1.1 (A:) hyperpl 6.2 75 0.0054 11.5 1.1 13 54-66 16-28 (61)
7 d1q90m_ f.23.25.1 (M:) PetM su 5.5 82 0.006 11.3 3.1 23 25-47 6-28 (34)
8 d1utca1 a.118.1.4 (A:331-355) 5.0 90 0.0065 11.1 1.4 15 47-61 6-20 (26)
9 d1l7va_ f.22.1.1 (A:) ABC tran 4.8 92 0.0067 11.0 1.6 19 45-63 73-91 (324)
10 d2axti1 f.23.37.1 (I:1-35) Pho 4.6 56 0.0041 12.1 -0.7 14 44-57 20-33 (35)
No 1
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=5.3e-24 Score=138.41 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3599999999999999-998747899999999999998237878987999999999999999999999999999709
Q gi|254781087|r 16 GYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 (91)
Q Consensus 16 ~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFav 91 (91)
++......++++|+++ ++.+|+|+|+|+++++++|+++||||+++++++++++|++++|+++||+++++++++|++
T Consensus 2 e~~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa~ 78 (79)
T d1c99a_ 2 ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34888899999999999998787887999999999998559317776999999999999999999999999999980
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.26 E-value=24 Score=13.91 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 302359999999999999999874789
Q gi|254781087|r 13 AANGYYSLAAKYVAVGMACLGMGLVAL 39 (91)
Q Consensus 13 a~~~~~a~aak~IGAGlA~ig~~G~gi 39 (91)
-..+||..-++.-|.|+..+|.+|=-+
T Consensus 18 P~~~Ef~~ia~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 18 PTKDEYLAVAKVTALGISLLGIIGYII 44 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999999999999999999999999
No 3
>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.36 E-value=18 Score=14.54 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999982
Q gi|254781087|r 39 LAVSNIFTTYLSGAF 53 (91)
Q Consensus 39 iGiG~if~~~i~~va 53 (91)
+|+||.++++++|+-
T Consensus 8 vGvGNcASslvqGie 22 (243)
T d1gr0a1 8 VGVGNCASSLVQGVE 22 (243)
T ss_dssp ECCSHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHH
T ss_conf 803078999999999
No 4
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=9.74 E-value=50 Score=12.34 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 478999999999999982378789879999999999999
Q gi|254781087|r 36 LVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAE 74 (91)
Q Consensus 36 G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~E 74 (91)
|++---=-.|..++-...|||+.++.+.++.-+=+.=.|
T Consensus 16 g~~apSv~lfa~Am~~~~rrpeLa~li~~tL~~Lh~~ge 54 (121)
T d2hkua2 16 GPGAPSVELFTSAMLMTGRRSELRDLITDTLRTLHSSGE 54 (121)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 568972899999999805770178899999999999688
No 5
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=8.52 E-value=56 Score=12.07 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99998237878987999999999999
Q gi|254781087|r 48 YLSGAFRNPCAASAHKTEVLIFAVIA 73 (91)
Q Consensus 48 ~i~~vaRNP~~~~~l~~~~ilG~Al~ 73 (91)
++..+..||+.+..-.+|-++|-++-
T Consensus 19 l~~~l~~d~e~~~~W~~Yhli~d~lr 44 (66)
T d1or7c_ 19 LLNELAHNPEMQKTWESYHLIRDSMR 44 (66)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99998659999999999999999986
No 6
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.18 E-value=75 Score=11.46 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 3787898799999
Q gi|254781087|r 54 RNPCAASAHKTEV 66 (91)
Q Consensus 54 RNP~~~~~l~~~~ 66 (91)
++|+.+++|+..+
T Consensus 16 ~~p~~A~KITGML 28 (61)
T d1i2ta_ 16 MQPAFASKITGML 28 (61)
T ss_dssp HCGGGHHHHHHHH
T ss_pred HCHHHHCCHHHHH
T ss_conf 7800101056877
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.53 E-value=82 Score=11.25 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987478999999999
Q gi|254781087|r 25 VAVGMACLGMGLVALAVSNIFTT 47 (91)
Q Consensus 25 IGAGlA~ig~~G~giGiG~if~~ 47 (91)
-|..+.|+|+.-.|+.+|++.-.
T Consensus 6 agta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 6 AGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHEE
T ss_conf 00349999899999988775002
No 8
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.98 E-value=90 Score=11.06 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=11.3
Q ss_pred HHHHHHHCCHHHHHH
Q ss_conf 999998237878987
Q gi|254781087|r 47 TYLSGAFRNPCAASA 61 (91)
Q Consensus 47 ~~i~~vaRNP~~~~~ 61 (91)
-+++.+..||+.+-.
T Consensus 6 pyi~~vlqnpdlalr 20 (26)
T d1utca1 6 PYITNVLQNPDLALR 20 (26)
T ss_dssp HHHHHTTCCHHHHHH
T ss_pred HHHHHHCCCHHHHHH
T ss_conf 436633138028898
No 9
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=4.82 E-value=92 Score=11.00 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=12.7
Q ss_pred HHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999823787898799
Q gi|254781087|r 45 FTTYLSGAFRNPCAASAHK 63 (91)
Q Consensus 45 f~~~i~~vaRNP~~~~~l~ 63 (91)
.|..++.+.|||=+.+.+.
T Consensus 73 sG~~lQ~~~rNpLA~P~il 91 (324)
T d1l7va_ 73 SGAVMQALFENPLAEPGLL 91 (324)
T ss_dssp HHHHHHHHHTCTTCCTTTT
T ss_pred HHHHHHHHHCCCCCCCHHH
T ss_conf 9999999817988783678
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.59 E-value=56 Score=12.09 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=6.6
Q ss_pred HHHHHHHHHHCCHH
Q ss_conf 99999999823787
Q gi|254781087|r 44 IFTTYLSGAFRNPC 57 (91)
Q Consensus 44 if~~~i~~vaRNP~ 57 (91)
+||=+-+--+|||.
T Consensus 20 iFGFLSnDP~RnP~ 33 (35)
T d2axti1 20 VFGFLSGDPARNPK 33 (35)
T ss_dssp HHHHHTTCTTCSSC
T ss_pred HHHHCCCCCCCCCC
T ss_conf 98630589988989
Done!