RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781087|ref|YP_003065500.1| H+transporting two-sector
ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia
          coli [TaxId: 562]}
          Length = 79

 Score = 28.8 bits (65), Expect = 0.12
 Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 25 VAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVV 84
          V +G+A +G    A+ +  +   +L GA R P      +T+  I   + +++ +  + + 
Sbjct: 15 VMMGLAAIG---AAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLG 71

Query: 85 MLLLFVI 91
          + ++F +
Sbjct: 72 LYVMFAV 78


>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 44

 Score = 24.9 bits (54), Expect = 1.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 49 LSGAFRNPCAA 59
          LSG ++ PCA 
Sbjct: 3  LSGRYKGPCAV 13


>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus
           thermophilus [TaxId: 274]}
          Length = 185

 Score = 23.4 bits (50), Expect = 5.0
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 20  LAAKYVAVGM----ACLGMGLVALAVSNIFTTYLSGAFRN 55
           L  + V V +     C+ M  V    S   T+ + G FR 
Sbjct: 133 LEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRE 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 283,053
Number of extensions: 9745
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.3 bits)