HHsearch alignment for GI: 254781088 and conserved domain: PRK13417
>PRK13417 F0F1 ATP synthase subunit A; Provisional.
Probab=100.00 E-value=0 Score=385.09 Aligned_cols=227 Identities=29% Similarity=0.521 Sum_probs=199.8
Q ss_pred EEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHH
Q ss_conf 1424834641089999999999999999983146----55378864035677887567877-520576675302589999
Q gi|254781088|r 17 IQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSN----CRVVPTRLQSFFEIIYQFIMSTL-CDSAGNQSKNFFPFVFSL 91 (250)
Q Consensus 17 ~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~----~~~vP~~~q~~~E~i~~~i~~~v-~~~~g~~~~~~~p~i~Tl 91 (250)
T Consensus 85 ~~~~~lD~SITK~V~~l~i~~~~l~~~f~~~ar~y~k~~~~~PsG~~nfvE~iV~FVRD~IakpnIG~k~~k~~P~LLTi 164 (352)
T PRK13417 85 HYVGGFDMHITKRVTMMWIVAFFLFLIFIPAANIIAKNPLKVQSRFANTVEVFVNFLRKDIVDESMHGHGHSYYHYIFTL 164 (352)
T ss_pred EECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEECCCCCCCCCCEEHHHHHH
T ss_conf 42377247763659999999999999999999998748887981777789999888631160402576553010899999
Q ss_pred HHHHHCCCCCCCHHH-----------------------------------HHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 998512323230124-----------------------------------544310355421467999999999998415
Q gi|254781088|r 92 FVFLTTANLLGLHPY-----------------------------------LFSFTSQIVVTTSFSLLVVLSVVISGFYVN 136 (250)
Q Consensus 92 F~fIl~~NllGLiP~-----------------------------------~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~ 136 (250)
T Consensus 165 FFFIl~~NlmGLIP~~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~g~~vTgni~vT~~LAl~tfii~~~~G~k~~ 244 (352)
T PRK13417 165 FFFILFCNLMGLVPSVGELTVVASDYGGLVALGVMDHTPHALPTFAKVWSGITVTGDISVTMTLALLTMFLIYGAGFSYQ 244 (352)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999987731688853223211112221222211234321110010135886766699999999999999998410211
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8642111389999875430233356-776544133333577787776899999999999999987889999999999999
Q gi|254781088|r 137 GLGFLRLFIPKDIPLLIKPLVCFIE-VSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLAN 215 (250)
Q Consensus 137 g~~~~~~~~~~g~p~~l~p~~~~iE-~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (250)
T Consensus 245 G~~~fw~~vP~GvP~~l~pil~pIE~i~~~~~rPfsL~iRLFANM~AGHiill~l~~~if~~~~-----~~~~~~s~~~~ 319 (352)
T PRK13417 245 GPKFIWHSVPNGVPLLLYPIMWPLEFIVSPMAKTFALTVRLLANMTAGHVIILALMGFIFQFQS-----WGIVPVSVIGS 319 (352)
T ss_pred CCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_conf 6323335589999706999999999999998708999999999987639999999999999988-----99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999999973340103
Q gi|254781088|r 216 VAVTGLEFFVAFMQAYIFMVLACVYIGDVYRSD 248 (250)
Q Consensus 216 ~~~~~lel~v~~iQAyVF~~Lt~~Yi~~a~~~~ 248 (250)
T Consensus 320 ~~i~~lEllVa~LQAYIFtlLsavYIg~A~~~H 352 (352)
T PRK13417 320 GLIYVLEIFVAFLQAYIFVLLTSLFVGLSMHRH 352 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999999973664348