HHsearch alignment for GI: 254781088 and conserved domain: PRK13420
>PRK13420 F0F1 ATP synthase subunit A; Provisional.
Probab=100.00 E-value=0 Score=397.84 Aligned_cols=217 Identities=27% Similarity=0.452 Sum_probs=198.0
Q ss_pred HHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 673124500014248346410899999999999999999831465537-8864035677887567877520576675302
Q gi|254781088|r 7 SQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVV-PTRLQSFFEIIYQFIMSTLCDSAGNQSKNFF 85 (250)
Q Consensus 7 ~~f~~~~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~~v-P~~~q~~~E~i~~~i~~~v~~~~g~~~~~~~ 85 (250)
T Consensus 4 e~f~~~~lf~i--g~--~~it~tvl~~~iv~~il~~~~~~~~r~~~~v~P~~~Q~~~E~iv~fi~~~v~~~~g~~~~~~~ 79 (230)
T PRK13420 4 EGFLAHVLFHI--GP--LPITESVLTTWLIMIVLVLASWVLTRRLSLLQPSRFQVILEGVLSTIEDAVKEVIPRHARLVF 79 (230)
T ss_pred CCCCCCCEEEE--CC--EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEH
T ss_conf 44877726876--79--855399999999999999999999827887899833121399999999999986161242003
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 58999999851232323012454431035542146799999999999841586-42111389999875430233356776
Q gi|254781088|r 86 PFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFIEVSS 164 (250)
Q Consensus 86 p~i~TlF~fIl~~NllGLiP~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~-~~~~~~~~~g~p~~l~p~~~~iE~is 164 (250)
T Consensus 80 P~i~TlF~FIl~~NllGliPg~~~pTa~i~~t~~LAl~~fi~~~~~Gik~~G~~~ylk~~~~p------~p~l~pieiis 153 (230)
T PRK13420 80 PFIATLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIRAEGLRAYLKHYLSP------SPFLLPFHLIS 153 (230)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC------HHHHHHHHHHH
T ss_conf 899999999999988436688879986800489999999999999887520747776775476------49999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54413333357778777689999999999999998788999999999999999999999999999999999999997334
Q gi|254781088|r 165 FLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDV 244 (250)
Q Consensus 165 ~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~~Lt~~Yi~~a 244 (250)
T Consensus 154 ~~~rpiSLslRLFgNi~ag~ii~~~~~~l----------------~~~l~pv~~~~lel~v~~IQAyVFt~Lt~vYI~~A 217 (230)
T PRK13420 154 EITRTLALAVRLFGNMMSLELAALLVLLI----------------AGFLVPVPILLLHIIEAIVQAYIFGMLALIYIAGG 217 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989999999999999989999999999----------------99999999999999999999999999999999878
Q ss_pred CCCCC
Q ss_conf 01034
Q gi|254781088|r 245 YRSDQ 249 (250)
Q Consensus 245 ~~~~~ 249 (250)
T Consensus 218 ie~he 222 (230)
T PRK13420 218 IQALE 222 (230)
T ss_pred HHHHH
T ss_conf 77788