HHsearch alignment for GI: 254781088 and conserved domain: PRK13421
>PRK13421 F0F1 ATP synthase subunit A; Provisional.
Probab=100.00 E-value=0 Score=405.02 Aligned_cols=220 Identities=26% Similarity=0.421 Sum_probs=199.4
Q ss_pred CCCCHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87644673124500014248346410899999999999999999831465537886403567788756787752057667
Q gi|254781088|r 2 SKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQS 81 (250)
Q Consensus 2 ~~sP~~~f~~~~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~~vP~~~q~~~E~i~~~i~~~v~~~~g~~~ 81 (250)
T Consensus 1 ~~~pl~~~p~f-----~iG~~--~it~tvl~~wiv~~~l~~~~~~~~r~~klvP~~~Q~~~E~~~~fv~~~v~~~~g~~~ 73 (231)
T PRK13421 1 NASPLSTVPLF-----HLGPV--PISAPVLATWAIMAVLVAGALVATRRLSLAPSRLQSVLELFVATIDAQIRDTMQTPP 73 (231)
T ss_pred CCCCCCCCCEE-----EEECE--EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf 98987677715-----77085--443999999999999999999995888538998815403799988889998627467
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 530258999999851232323012454431035542146799999999999841586-4211138999987543023335
Q gi|254781088|r 82 KNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFI 160 (250)
Q Consensus 82 ~~~~p~i~TlF~fIl~~NllGLiP~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~-~~~~~~~~~g~p~~l~p~~~~i 160 (250)
T Consensus 74 ~~~~P~i~TlF~fIl~~Nl~GliPg~~~pTa~l~~t~~LAl~v~~~~~~~gik~~G~~~y~k~~~~P------~~i~~pi 147 (231)
T PRK13421 74 ARYRALIGTLFVFVLCANWSSLVPGVEPPTAHLETDAALALIVLLATIYYGVRARGVRGYLATFAEP------TWVMIPL 147 (231)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC------HHHHHHH
T ss_conf 5338999999999999999865488868753710339999999999999999980840630201375------0688799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67765441333335777877768999999999999999878899999999999999999999999999999999999999
Q gi|254781088|r 161 EVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVY 240 (250)
Q Consensus 161 E~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~~Lt~~Y 240 (250)
T Consensus 148 ~ii~~l~rpvSLslRLFgNi~aG~~il~~~~~l----------------~~~~~pi~~~~lel~v~~iQAyVFt~Lt~vY 211 (231)
T PRK13421 148 NVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSL----------------AGLLVPIPLMALDLLTGAVQAYIFAVLAMVF 211 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999843138899999999869999999999----------------9999999999999999999999999999999
Q ss_pred HHHHCCCCCC
Q ss_conf 7334010349
Q gi|254781088|r 241 IGDVYRSDQH 250 (250)
Q Consensus 241 i~~a~~~~~h 250 (250)
T Consensus 212 I~~Ai~~~~~ 221 (231)
T PRK13421 212 IGAAVSDDET 221 (231)
T ss_pred HHHHHCCCCC
T ss_conf 9857452256