HHsearch alignment of GI: 254781088 and MMDB domain: 1c17_M_
>1c17_M (M:) ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli}
Probab=100.00 E-value=0 Score=301.07 Aligned_cols=159 Identities=29% Similarity=0.430 Sum_probs=145.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCHH----------------HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7667530258999999851232323012----------------454431035542146799999999999841586421
Q gi|254781088|r 78 GNQSKNFFPFVFSLFVFLTTANLLGLHP----------------YLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFL 141 (250)
Q Consensus 78 g~~~~~~~p~i~TlF~fIl~~NllGLiP----------------~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~~~ 141 (250)
.|++|||.|++.|+|.||+++|++|++| |.++||||+++|+++|+++|+.+++.|+|++|.+++
T Consensus 1 ~k~~~~~~p~~~tlF~fI~~~N~~glip~~~~~~~~~~~~g~~p~~~~pTa~~~~tl~LAl~~~~~~~~~g~~~~g~~~~ 80 (177)
T 1c17_M 1 HGKSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGF 80 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99720689999999999999998853103232687640222442124512347899999999999999999998060666
Q ss_pred CC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--3899998754302333567765441333335777877768999999999999999878899999999999999999
Q gi|254781088|r 142 RL--FIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVT 219 (250)
Q Consensus 142 ~~--~~~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
.+ +.|+|.|+++.|++.++|++|+++||+|||+||||||+|||++++++++..+. ..+...+..+.
T Consensus 81 ~~~~~~P~g~p~~l~~~l~~iE~is~~~rplsLslRLf~Ni~AGhiil~li~~~~~~------------~~~~~~~~~~~ 148 (177)
T 1c17_M 81 TKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPW------------WSQWILNVPWA 148 (177)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------CHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_conf 788704234403899899999999999889999999998244578999999999999------------99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999973340103
Q gi|254781088|r 220 GLEFFVAFMQAYIFMVLACVYIGDVYRSD 248 (250)
Q Consensus 220 ~lel~v~~iQAyVF~~Lt~~Yi~~a~~~~ 248 (250)
++|++|++||||||++|+++|++|+.|||
T Consensus 149 ~~e~~v~~IQAyVF~~Lt~~Yi~~~~~~h 177 (177)
T 1c17_M 149 IFHILIITLQAFIFMVLTIVYLSMASEEH 177 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999998676439