Query gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 250
No_of_seqs 118 out of 2678
Neff 7.0
Searched_HMMs 23785
Date Wed Jun 1 01:11:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781088.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c17_M ATP synthase subunit A; 100.0 0 0 289.7 7.8 157 80-248 3-177 (177)
2 3few_X Colicin S4; cell lysis, 52.1 5.1 0.00021 17.4 1.6 13 238-250 492-504 (505)
3 2wns_A Orotate phosphoribosylt 45.9 4 0.00017 18.0 0.3 11 240-250 195-205 (205)
4 3ecs_A Translation initiation 40.6 7.6 0.00032 16.5 1.0 21 230-250 294-314 (315)
5 3mop_A Myeloid differentiation 19.0 15 0.00065 14.9 -0.5 12 239-250 97-108 (110)
6 2hzs_I RNA polymerase II media 18.0 37 0.0015 13.0 1.2 16 235-250 12-27 (27)
7 2gha_A Maltose ABC transporter 14.9 29 0.0012 13.5 0.0 11 240-250 372-382 (382)
8 3a4m_A L-seryl-tRNA(SEC) kinas 14.6 33 0.0014 13.2 0.3 13 238-250 246-258 (260)
9 2iml_A Hypothetical protein; F 14.2 29 0.0012 13.5 -0.1 15 236-250 185-199 (199)
10 2k32_A A; NMR {Campylobacter j 13.7 48 0.002 12.4 0.9 12 239-250 105-116 (116)
No 1
>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli} SCOP: f.18.1.1
Probab=100.00 E-value=0 Score=289.69 Aligned_cols=157 Identities=30% Similarity=0.469 Sum_probs=137.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHH----------------HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 675302589999998512323230124----------------54431035542146799999999999841586-4211
Q gi|254781088|r 80 QSKNFFPFVFSLFVFLTTANLLGLHPY----------------LFSFTSQIVVTTSFSLLVVLSVVISGFYVNGL-GFLR 142 (250)
Q Consensus 80 ~~~~~~p~i~TlF~fIl~~NllGLiP~----------------~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~-~~~~ 142 (250)
|.|.+.|++.|+|+||+++|++|++|+ ..+||+|+|+|+++|+.+|+.+++.|+|++|. +|++
T Consensus 3 ~~~~~~P~~~tlF~fIl~~N~~gliP~~~~~~~~~~~~~~~~~~~~pTs~~~~t~~lAl~~~v~~~~~gi~~~G~~~~~~ 82 (177)
T 1c17_M 3 KSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTK 82 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 74017999999999999999987326544420121002454445688767212799999999999999999925699989
Q ss_pred CC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13-89999875430233356776544133333577787776899999999999999987889999999999999999999
Q gi|254781088|r 143 LF-IPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGL 221 (250)
Q Consensus 143 ~~-~~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (250)
++ .|++.|+++.|++.++|++|+++||+|||+||||||+|||+++.+++++... ..+...++.+.+|
T Consensus 83 ~~~~~~~~~~~l~p~~~~ie~is~~~rpiSLslRLFgNi~AG~ill~~~~~~~~~------------~~~~~~~i~~~~f 150 (177)
T 1c17_M 83 ELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPW------------WSQWILNVPWAIF 150 (177)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------CHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_conf 9837887415888899999999981421889999999998768999999999999------------9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999973340103
Q gi|254781088|r 222 EFFVAFMQAYIFMVLACVYIGDVYRSD 248 (250)
Q Consensus 222 el~v~~iQAyVF~~Lt~~Yi~~a~~~~ 248 (250)
|++||++|||||++||++|+++|.|||
T Consensus 151 elfv~~IQAyVF~~Lt~vYi~~a~~eH 177 (177)
T 1c17_M 151 HILIITLQAFIFMVLTIVYLSMASEEH 177 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999998676429
No 2
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=52.11 E-value=5.1 Score=17.42 Aligned_cols=13 Identities=15% Similarity=0.071 Sum_probs=6.6
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9997334010349
Q gi|254781088|r 238 CVYIGDVYRSDQH 250 (250)
Q Consensus 238 ~~Yi~~a~~~~~h 250 (250)
-.-|..|++||||
T Consensus 492 ~~~~~~~~~~~~~ 504 (505)
T 3few_X 492 KEIIKPAHHHHHH 504 (505)
T ss_dssp HHTSCCCC-----
T ss_pred HHHCCCCCCCCCC
T ss_conf 9862430013357
No 3
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=45.93 E-value=4 Score=17.96 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=10.4
Q ss_pred HHHHHCCCCCC
Q ss_conf 97334010349
Q gi|254781088|r 240 YIGDVYRSDQH 250 (250)
Q Consensus 240 Yi~~a~~~~~h 250 (250)
|++||+++|||
T Consensus 195 ~l~~~~~~~~~ 205 (205)
T 2wns_A 195 FIQEAHHHHHH 205 (205)
T ss_dssp HHHC-------
T ss_pred HHHHHHHCCCC
T ss_conf 99863440279
No 4
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=40.64 E-value=7.6 Score=16.52 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999997334010349
Q gi|254781088|r 230 AYIFMVLACVYIGDVYRSDQH 250 (250)
Q Consensus 230 AyVF~~Lt~~Yi~~a~~~~~h 250 (250)
.+|.-.|.-+|++++.+||||
T Consensus 294 s~v~~~L~kly~~~~~~~~~~ 314 (315)
T 3ecs_A 294 SAVSDELIKLYLAAAEHHHHH 314 (315)
T ss_dssp GGHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHHHCCHHHCCCC
T ss_conf 889999999753410111247
No 5
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=18.96 E-value=15 Score=14.93 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=7.3
Q ss_pred HHHHHHCCCCCC
Q ss_conf 997334010349
Q gi|254781088|r 239 VYIGDVYRSDQH 250 (250)
Q Consensus 239 ~Yi~~a~~~~~h 250 (250)
-|+++++++|||
T Consensus 97 ky~~~~~~~~~~ 108 (110)
T 3mop_A 97 KYIAAALEHHHH 108 (110)
T ss_dssp TTSTTSSCC---
T ss_pred HHHHHHHHHCCC
T ss_conf 999817642114
No 6
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=18.03 E-value=37 Score=12.99 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=10.3
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999997334010349
Q gi|254781088|r 235 VLACVYIGDVYRSDQH 250 (250)
Q Consensus 235 ~Lt~~Yi~~a~~~~~h 250 (250)
+|--.|.++.+++|||
T Consensus 12 vlkftftgekhhhhhh 27 (27)
T 2hzs_I 12 VLKFTFTGEKHHHHHH 27 (27)
T ss_dssp HHHHHHHCCCCSSCCC
T ss_pred EEEEEEECCCCCCCCC
T ss_conf 7898873552234669
No 7
>2gha_A Maltose ABC transporter, periplasmic maltose- binding protein; periplasmic binding protein, MBP, maltotriose, sugar binding protein; HET: MLR; 1.60A {Thermotoga maritima MSB8} PDB: 2ghb_A 2fnc_A*
Probab=14.88 E-value=29 Score=13.52 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=6.8
Q ss_pred HHHHHCCCCCC
Q ss_conf 97334010349
Q gi|254781088|r 240 YIGDVYRSDQH 250 (250)
Q Consensus 240 Yi~~a~~~~~h 250 (250)
=+..+++||||
T Consensus 372 ~i~~~~~~~~~ 382 (382)
T 2gha_A 372 QIQGSHHHHHH 382 (382)
T ss_dssp HHC--------
T ss_pred HHCCCCCCCCC
T ss_conf 97285675579
No 8
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3add_A* 3adc_A* 3adb_A*
Probab=14.63 E-value=33 Score=13.19 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=10.4
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9997334010349
Q gi|254781088|r 238 CVYIGDVYRSDQH 250 (250)
Q Consensus 238 ~~Yi~~a~~~~~h 250 (250)
.-|++..+++|||
T Consensus 246 ~~~ln~~l~~~~~ 258 (260)
T 3a4m_A 246 KDLLNSYLEHHHH 258 (260)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999876101125
No 9
>2iml_A Hypothetical protein; FMN binding, PSI-2, structural genomics, protein structure initiative; HET: FMN; 1.65A {Archaeoglobus fulgidus} SCOP: b.45.1.4
Probab=14.24 E-value=29 Score=13.51 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=12.5
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999997334010349
Q gi|254781088|r 236 LACVYIGDVYRSDQH 250 (250)
Q Consensus 236 Lt~~Yi~~a~~~~~h 250 (250)
+..=++++++++|||
T Consensus 185 ~l~e~i~e~~~~~~~ 199 (199)
T 2iml_A 185 IIMEKIGEGHHHHHH 199 (199)
T ss_dssp HHHHHTTCC------
T ss_pred HHHHHHHCCCCCCCC
T ss_conf 999987400244579
No 10
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=13.69 E-value=48 Score=12.36 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCC
Q ss_conf 997334010349
Q gi|254781088|r 239 VYIGDVYRSDQH 250 (250)
Q Consensus 239 ~Yi~~a~~~~~h 250 (250)
+|+..++++|||
T Consensus 105 l~ve~s~~~~~~ 116 (116)
T 2k32_A 105 IYADGSHHHHHH 116 (116)
T ss_dssp HHHHSSSGGGTC
T ss_pred EEEEEECCCCCC
T ss_conf 999997665579
Done!