HHSEARCH alignment of GI: 254781088 and SCOP domain: d1c17m_

Alignment

Probab=100.00  E-value=0  Score=269.90  Aligned_cols=151  Identities=31%  Similarity=0.491  Sum_probs=133.2

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCHHHH----------------HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf             6753025899999985123232301245----------------44310355421467999999999998415864-211
Q gi|254781088|r   80 QSKNFFPFVFSLFVFLTTANLLGLHPYL----------------FSFTSQIVVTTSFSLLVVLSVVISGFYVNGLG-FLR  142 (250)
Q Consensus        80 ~~~~~~p~i~TlF~fIl~~NllGLiP~~----------------~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~-~~~  142 (250)
                      |.|...|++.|+|+||+++|++|++|+.                .+||+|+++|+++|+.+|+.+++.|+|+||.+ +.+
T Consensus         3 ~~~~~~P~~~tlF~fIl~~Nl~gLiP~~~~~~~~~~~~~~~~~~~~~Ta~~~~t~~lal~~~~~~~~~gik~~G~~~~~~   82 (171)
T d1c17m_           3 KSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTK   82 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             72058999999999999999986544111278864022244212454211899899999999999999999926156778


Q ss_pred             CC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13-89999875430233356776544133333577787776899999999999999987889999999999999999999
Q gi|254781088|r  143 LF-IPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGL  221 (250)
Q Consensus       143 ~~-~~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  221 (250)
                      ++ .|++.|+++.|++.++|++|+++||+|||+||||||+|||+++.+++++...            ..+...++++.++
T Consensus        83 ~~~~~~~~~~~l~p~~~~ie~is~~~rpvSLslRLFgNm~AG~ill~l~~~~~~~------------~~~~~~~v~~~~f  150 (171)
T d1c17m_          83 ELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPW------------WSQWILNVPWAIF  150 (171)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------CHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_conf             8715345517999888999999999999999999999786039999999999999------------9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999973
Q gi|254781088|r  222 EFFVAFMQAYIFMVLACVYIG  242 (250)
Q Consensus       222 el~v~~iQAyVF~~Lt~~Yi~  242 (250)
                      |++||++|||||++||++|++
T Consensus       151 elfv~~iQAyVFt~Lt~vYis  171 (171)
T d1c17m_         151 HILIITLQAFIFMVLTIVYLS  171 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999959

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: F1F0 ATP synthase subunit A
superfamily: F1F0 ATP synthase subunit A
family: F1F0 ATP synthase subunit A
domain: F1F0 ATP synthase subunit A
species: Escherichia coli [TaxId: 562]