RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str. psy62] (250 letters) >gnl|CDD|180273 PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated. Length = 227 Score = 168 bits (429), Expect = 9e-43 Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 14/230 (6%) Query: 16 PIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCD 75 + + +F + L++L+ +L++ +FA A VP LQ+F E+I +F+ + D Sbjct: 4 HLIIGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKD 63 Query: 76 SAGNQSKNFFPFVFSLFVFLTTANLLGLHPYL-FSFTSQIVVTTSFSLLVVLSVVISGFY 134 + G + K F P F+LF+F+ NLLGL PYL F T+ I VT + +L+V + V+ G Sbjct: 64 NIGGKGKKFAPLAFTLFLFILLMNLLGLIPYLLFPPTADINVTLALALIVFVLVIYYGIK 123 Query: 135 VNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGF 193 GL G+L+ F + PLL+ IE+ S RP+SLSLRLF NMLAG L+L + A Sbjct: 124 KKGLGGYLKEFYLQPHPLLLP-----IEIISEFSRPISLSLRLFGNMLAGELILALIALL 178 Query: 194 STSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243 G G+ + P++ VA T E FV +QAYIFM+L VYI Sbjct: 179 -------GGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221 >gnl|CDD|162216 TIGR01131, ATP_synt_6_or_A, ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes). The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. Length = 226 Score = 153 bits (390), Expect = 3e-38 Identities = 86/221 (38%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 25 SFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNF 84 + + +L L+ LL + IF + + ++P+R Q+ E IY+F++S + G + F Sbjct: 11 TLFSLTLLSLILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKF 70 Query: 85 FPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLF 144 FP +F+LF+F+ +NLLGL PY F+ TS + T +L + L + ISGF + GFL Sbjct: 71 FPLIFTLFLFILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHL 130 Query: 145 IPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLG 204 +P PL + P + IE S+L RP+SLS+RLFAN+ AGHL+L + +G S+MS + Sbjct: 131 VPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLLFSLMSSAIFA 190 Query: 205 IAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDVY 245 + L VA+ LE FVAF+QAY+F +L C+Y+ D Sbjct: 191 LLLLIL-----VALIILEIFVAFIQAYVFTLLTCLYLNDAL 226 >gnl|CDD|172043 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional. Length = 342 Score = 84.8 bits (210), Expect = 2e-17 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 26/240 (10%) Query: 17 IQVQGFDLSFTNSSLAM-LVSLLVIFIFAF----FAVSNCRVVPTRLQSFFEIIYQFIMS 71 + V GFD+S T + M + S +++ +F + P L + E + +FI Sbjct: 97 LVVGGFDISITKHVVMMWIASAILLVVFLAAGRKYKKMTKSQAPKGLANAMEALVEFIRL 156 Query: 72 TLCDS-AGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVI 130 + S G+ + F P++ ++F F+ NLLGL PY + T I VT + ++ Sbjct: 157 DVAKSNIGHGYEKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQY 216 Query: 131 SGFYVNGLG----FLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLM 186 + +G+ L + +++ P IE +P +L++RLFANM AGH++ Sbjct: 217 AAIKAHGIKGYLAHLTGGTHWSLWIIMIP----IEFIGLFTKPFALTVRLFANMTAGHIV 272 Query: 187 LKVFAGFS----TSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIG 242 + S + ++++ + + F+ L LE FVAF+QAYIF +L+ ++IG Sbjct: 273 ILSLIFISFILKSYIVAVAV-SVPFAIFIYL-------LELFVAFLQAYIFTMLSALFIG 324 >gnl|CDD|184043 PRK13417, PRK13417, F0F1 ATP synthase subunit A; Provisional. Length = 352 Score = 78.8 bits (194), Expect = 1e-15 Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 46/267 (17%) Query: 19 VQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFF----EIIYQFIMSTLC 74 V GFD+ T M + +F+ A + P ++QS F E+ F+ + Sbjct: 87 VGGFDMHITKRVTMMWIVAFFLFLIFIPAANIIAKNPLKVQSRFANTVEVFVNFLRKDIV 146 Query: 75 DSA-GNQSKNFFPFVFSLFVFLTTANLLGLHPYL-------------------------- 107 D + +++ ++F+LF F+ NL+GL P + Sbjct: 147 DESMHGHGHSYYHYIFTLFFFILFCNLMGLVPSVGELTVVASDYGGLVALGVMDHTPHAL 206 Query: 108 ---------FSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVC 158 + T I VT + +LL + + +GF G F+ +P +PLL+ P++ Sbjct: 207 PTFAKVWSGITVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMW 266 Query: 159 FIE-VSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVA 217 +E + S + + +L++RL ANM AGH+++ GF S G++ ++ V+ + Sbjct: 267 PLEFIVSPMAKTFALTVRLLANMTAGHVIILALMGFIFQFQSWGIVPVS-----VIGSGL 321 Query: 218 VTGLEFFVAFMQAYIFMVLACVYIGDV 244 + LE FVAF+QAYIF++L +++G Sbjct: 322 IYVLEIFVAFLQAYIFVLLTSLFVGLS 348 >gnl|CDD|184044 PRK13420, PRK13420, F0F1 ATP synthase subunit A; Provisional. Length = 226 Score = 74.8 bits (184), Expect = 2e-14 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 29/222 (13%) Query: 24 LSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKN 83 L T S L ++V+ + ++ + P R Q E + I + + ++ Sbjct: 14 LPITESVLTTWGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRHARL 73 Query: 84 FFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGL-GFLR 142 PFV +L++F+ ANL+GL P S T+ + VT + +LLV SV G GL +L+ Sbjct: 74 VLPFVGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIRAEGLREYLK 133 Query: 143 LFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLA---GHLMLKVFAGFSTSMMS 199 ++ LL P E++ R ++L++RLF N+++ L++ + AGF Sbjct: 134 HYLSPSPFLL--PFHLISEIT----RTLALAVRLFGNIMSLELAALLVLLVAGF------ 181 Query: 200 IGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYI 241 L V + L A +QAYIF +LA +YI Sbjct: 182 -------------LVPVPILMLHIIEALVQAYIFGMLALIYI 210 >gnl|CDD|184045 PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional. Length = 223 Score = 72.4 bits (178), Expect = 1e-13 Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 30/251 (11%) Query: 1 MSKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQS 60 M+ SP+S + + P+ + + + + V+ + A + P RLQS Sbjct: 1 MTASPLSTVPLFSLGPVPI-------SAPVVVTWAIMAVLAAGSALATRRLSLAPGRLQS 53 Query: 61 FFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSF 120 E++ I + + D+ + + +LF+F+ AN L P + T+ + + Sbjct: 54 VLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAAL 113 Query: 121 SLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFAN 179 +L+V L+ + G G+ G+L F + ++I PL + L R SL +RLF N Sbjct: 114 ALIVFLATIYYGVRARGVRGYLATFA-EPTWVMI-PL----NLVEQLTRTFSLIVRLFGN 167 Query: 180 MLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACV 239 +++G VF ++GI S +L + + L+ +QAYIF VLA V Sbjct: 168 VMSG-----VF-----------VIGIVLSLAGLLVPIPLMALDLLTGAVQAYIFAVLAMV 211 Query: 240 YIGDVYRSDQH 250 +IG D+ Sbjct: 212 FIGAAVSDDEA 222 >gnl|CDD|132349 TIGR03306, altF1_A, alternate F1F0 ATPase, F0 subunit A. and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase. Length = 217 Score = 67.8 bits (166), Expect = 2e-12 Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 23/188 (12%) Query: 56 TRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIV 115 +R Q+ E++ I + D + + + PF+ +LF+F+ ANLL + P T + Sbjct: 48 SRWQNLLEVLVTGIQEQISDVGLAKPRKYLPFLGTLFLFIAVANLLSVIPGYEPPTGSLS 107 Query: 116 VTTSFSLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSL 174 T + +L V ++V + G GL G+L+ ++ K P ++ P E+S R ++L++ Sbjct: 108 TTAALALCVFVAVPLFGIAERGLSGYLKSYL-KPTPFML-PFNIIGELS----RTLALAV 161 Query: 175 RLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFM 234 RLF NM++G SM+ +L I+ PVL V L +QAYIF Sbjct: 162 RLFGNMMSG------------SMILAILLSISPLIFPVLMQV----LGLLTGMVQAYIFS 205 Query: 235 VLACVYIG 242 VLA VYI Sbjct: 206 VLATVYIA 213 >gnl|CDD|118689 pfam10161, DDDD, Putative mitochondrial precursor protein. This is a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. Members are putatively assigned to be mitochondrial precursor proteins but this could not be confirmed. Length = 80 Score = 28.5 bits (64), Expect = 1.7 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%) Query: 116 VTTSFSLLVVLSVVISGFYV------NGLGFLR---LFIPKD 148 F LL + VVI G Y+ N FL +F+P+D Sbjct: 34 EKMPFGLLRIFFVVIPGLYIGALISKNFANFLEENDIFVPED 75 >gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional. Length = 846 Score = 27.7 bits (61), Expect = 3.1 Identities = 11/23 (47%), Positives = 12/23 (52%) Query: 221 LEFFVAFMQAYIFMVLACVYIGD 243 L FV Q Y FM+L C I D Sbjct: 304 LALFVGVNQHYQFMLLGCALISD 326 >gnl|CDD|182591 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional. Length = 894 Score = 26.4 bits (59), Expect = 7.6 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%) Query: 105 PYLFSFTSQIVVTTSFSLLVVLSVVISGFYV 135 FS +T F L ++L +V G V Sbjct: 2 TTRFSLLPG-SITRFFLLFIILLLVTMGLMV 31 >gnl|CDD|152054 pfam11618, DUF3250, Protein of unknown function (DUF3250). This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. Length = 141 Score = 26.2 bits (58), Expect = 8.1 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%) Query: 59 QSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFL-----TTANLLGLHPYLFSFTSQ 113 ++ FE+ I +T + S +F P F + F TT + GL P + FTS Sbjct: 9 ENLFEL--HLIKATETPAGLELSGDFSPTTFCTYDFYDFETHTTPVVRGLQP-FYDFTSS 65 Query: 114 IVVTTSFSLL 123 V LL Sbjct: 66 YCVAMDALLL 75 >gnl|CDD|162649 TIGR01995, PTS-II-ABC-beta, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters. Length = 610 Score = 26.2 bits (58), Expect = 8.8 Identities = 9/57 (15%), Positives = 21/57 (36%) Query: 177 FANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIF 233 + G +K F F+ ++ + M ++ + + F V+F+ Y Sbjct: 387 VGGAIIGIGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLTYFI 443 >gnl|CDD|183198 PRK11560, PRK11560, phosphoethanolamine transferase; Provisional. Length = 558 Score = 25.8 bits (57), Expect = 9.9 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 17/90 (18%) Query: 106 YLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLF--------IPKDIPLLIKPLV 157 Y+ S T Q L +L+V I G ++N F R F + K + +++ L Sbjct: 3 YIKSLTQQ-------KLSFLLAVYI-GLFLNIAVFYRRFDSYAQDFTVWKGLSAVVE-LA 53 Query: 158 CFIEVSSFLFRPVSLSLRLFANMLAGHLML 187 + V+ FL R +SL R F +LA L+L Sbjct: 54 ATVLVTFFLLRLLSLFGRRFWRVLASLLVL 83 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.336 0.145 0.426 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,967,280 Number of extensions: 257867 Number of successful extensions: 1233 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1199 Number of HSP's successfully gapped: 106 Length of query: 250 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 159 Effective length of database: 4,028,145 Effective search space: 640475055 Effective search space used: 640475055 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 56 (25.3 bits)