RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
(250 letters)
>gnl|CDD|180273 PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.
Length = 227
Score = 168 bits (429), Expect = 9e-43
Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 14/230 (6%)
Query: 16 PIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCD 75
+ + +F + L++L+ +L++ +FA A VP LQ+F E+I +F+ + D
Sbjct: 4 HLIIGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKD 63
Query: 76 SAGNQSKNFFPFVFSLFVFLTTANLLGLHPYL-FSFTSQIVVTTSFSLLVVLSVVISGFY 134
+ G + K F P F+LF+F+ NLLGL PYL F T+ I VT + +L+V + V+ G
Sbjct: 64 NIGGKGKKFAPLAFTLFLFILLMNLLGLIPYLLFPPTADINVTLALALIVFVLVIYYGIK 123
Query: 135 VNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGF 193
GL G+L+ F + PLL+ IE+ S RP+SLSLRLF NMLAG L+L + A
Sbjct: 124 KKGLGGYLKEFYLQPHPLLLP-----IEIISEFSRPISLSLRLFGNMLAGELILALIALL 178
Query: 194 STSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243
G G+ + P++ VA T E FV +QAYIFM+L VYI
Sbjct: 179 -------GGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
>gnl|CDD|162216 TIGR01131, ATP_synt_6_or_A, ATP synthase subunit 6
(eukaryotes),also subunit A (prokaryotes). The F1/F0
ATP synthase is a multisubunit, membrane associated
enzyme found in bacteria and mitochondria and
chloroplast. This enzyme is principally involved in the
synthesis of ATP from ADP and inorganic phosphate by
coupling the energy derived from the proton
electrochemical gradient across the biological membrane.
A brief description of this multisubunit enzyme complex:
F1 and F0 represent two major clusters of subunits.
Individual subunits in each of these clusters are named
differently in prokaryotes and in organelles e.g.,
mitochondria and chloroplast. The bacterial equivalent
of subunit 6 is named subunit 'A'. It has been shown
that proton is conducted though this subunit. Typically,
deprotonation and reprotonation of the acidic amino acid
side-chains are implicated in the process.
Length = 226
Score = 153 bits (390), Expect = 3e-38
Identities = 86/221 (38%), Positives = 132/221 (59%), Gaps = 5/221 (2%)
Query: 25 SFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNF 84
+ + +L L+ LL + IF + + ++P+R Q+ E IY+F++S + G + F
Sbjct: 11 TLFSLTLLSLILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKF 70
Query: 85 FPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLF 144
FP +F+LF+F+ +NLLGL PY F+ TS + T +L + L + ISGF + GFL
Sbjct: 71 FPLIFTLFLFILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHL 130
Query: 145 IPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLG 204
+P PL + P + IE S+L RP+SLS+RLFAN+ AGHL+L + +G S+MS +
Sbjct: 131 VPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLLFSLMSSAIFA 190
Query: 205 IAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDVY 245
+ L VA+ LE FVAF+QAY+F +L C+Y+ D
Sbjct: 191 LLLLIL-----VALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
>gnl|CDD|172043 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.
Length = 342
Score = 84.8 bits (210), Expect = 2e-17
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 26/240 (10%)
Query: 17 IQVQGFDLSFTNSSLAM-LVSLLVIFIFAF----FAVSNCRVVPTRLQSFFEIIYQFIMS 71
+ V GFD+S T + M + S +++ +F + P L + E + +FI
Sbjct: 97 LVVGGFDISITKHVVMMWIASAILLVVFLAAGRKYKKMTKSQAPKGLANAMEALVEFIRL 156
Query: 72 TLCDS-AGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVI 130
+ S G+ + F P++ ++F F+ NLLGL PY + T I VT + ++
Sbjct: 157 DVAKSNIGHGYEKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQY 216
Query: 131 SGFYVNGLG----FLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLM 186
+ +G+ L + +++ P IE +P +L++RLFANM AGH++
Sbjct: 217 AAIKAHGIKGYLAHLTGGTHWSLWIIMIP----IEFIGLFTKPFALTVRLFANMTAGHIV 272
Query: 187 LKVFAGFS----TSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIG 242
+ S + ++++ + + F+ L LE FVAF+QAYIF +L+ ++IG
Sbjct: 273 ILSLIFISFILKSYIVAVAV-SVPFAIFIYL-------LELFVAFLQAYIFTMLSALFIG 324
>gnl|CDD|184043 PRK13417, PRK13417, F0F1 ATP synthase subunit A; Provisional.
Length = 352
Score = 78.8 bits (194), Expect = 1e-15
Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 46/267 (17%)
Query: 19 VQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFF----EIIYQFIMSTLC 74
V GFD+ T M + +F+ A + P ++QS F E+ F+ +
Sbjct: 87 VGGFDMHITKRVTMMWIVAFFLFLIFIPAANIIAKNPLKVQSRFANTVEVFVNFLRKDIV 146
Query: 75 DSA-GNQSKNFFPFVFSLFVFLTTANLLGLHPYL-------------------------- 107
D + +++ ++F+LF F+ NL+GL P +
Sbjct: 147 DESMHGHGHSYYHYIFTLFFFILFCNLMGLVPSVGELTVVASDYGGLVALGVMDHTPHAL 206
Query: 108 ---------FSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVC 158
+ T I VT + +LL + + +GF G F+ +P +PLL+ P++
Sbjct: 207 PTFAKVWSGITVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMW 266
Query: 159 FIE-VSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVA 217
+E + S + + +L++RL ANM AGH+++ GF S G++ ++ V+ +
Sbjct: 267 PLEFIVSPMAKTFALTVRLLANMTAGHVIILALMGFIFQFQSWGIVPVS-----VIGSGL 321
Query: 218 VTGLEFFVAFMQAYIFMVLACVYIGDV 244
+ LE FVAF+QAYIF++L +++G
Sbjct: 322 IYVLEIFVAFLQAYIFVLLTSLFVGLS 348
>gnl|CDD|184044 PRK13420, PRK13420, F0F1 ATP synthase subunit A; Provisional.
Length = 226
Score = 74.8 bits (184), Expect = 2e-14
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 24 LSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKN 83
L T S L ++V+ + ++ + P R Q E + I + + ++
Sbjct: 14 LPITESVLTTWGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRHARL 73
Query: 84 FFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGL-GFLR 142
PFV +L++F+ ANL+GL P S T+ + VT + +LLV SV G GL +L+
Sbjct: 74 VLPFVGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIRAEGLREYLK 133
Query: 143 LFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLA---GHLMLKVFAGFSTSMMS 199
++ LL P E++ R ++L++RLF N+++ L++ + AGF
Sbjct: 134 HYLSPSPFLL--PFHLISEIT----RTLALAVRLFGNIMSLELAALLVLLVAGF------ 181
Query: 200 IGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYI 241
L V + L A +QAYIF +LA +YI
Sbjct: 182 -------------LVPVPILMLHIIEALVQAYIFGMLALIYI 210
>gnl|CDD|184045 PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.
Length = 223
Score = 72.4 bits (178), Expect = 1e-13
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 30/251 (11%)
Query: 1 MSKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQS 60
M+ SP+S + + P+ + + + + V+ + A + P RLQS
Sbjct: 1 MTASPLSTVPLFSLGPVPI-------SAPVVVTWAIMAVLAAGSALATRRLSLAPGRLQS 53
Query: 61 FFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSF 120
E++ I + + D+ + + +LF+F+ AN L P + T+ + +
Sbjct: 54 VLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAAL 113
Query: 121 SLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFAN 179
+L+V L+ + G G+ G+L F + ++I PL + L R SL +RLF N
Sbjct: 114 ALIVFLATIYYGVRARGVRGYLATFA-EPTWVMI-PL----NLVEQLTRTFSLIVRLFGN 167
Query: 180 MLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACV 239
+++G VF ++GI S +L + + L+ +QAYIF VLA V
Sbjct: 168 VMSG-----VF-----------VIGIVLSLAGLLVPIPLMALDLLTGAVQAYIFAVLAMV 211
Query: 240 YIGDVYRSDQH 250
+IG D+
Sbjct: 212 FIGAAVSDDEA 222
>gnl|CDD|132349 TIGR03306, altF1_A, alternate F1F0 ATPase, F0 subunit A. and in
principle may run in either direction. This model
represents the F0 subunit A of this apparent second ATP
synthase.
Length = 217
Score = 67.8 bits (166), Expect = 2e-12
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 56 TRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIV 115
+R Q+ E++ I + D + + + PF+ +LF+F+ ANLL + P T +
Sbjct: 48 SRWQNLLEVLVTGIQEQISDVGLAKPRKYLPFLGTLFLFIAVANLLSVIPGYEPPTGSLS 107
Query: 116 VTTSFSLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSL 174
T + +L V ++V + G GL G+L+ ++ K P ++ P E+S R ++L++
Sbjct: 108 TTAALALCVFVAVPLFGIAERGLSGYLKSYL-KPTPFML-PFNIIGELS----RTLALAV 161
Query: 175 RLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFM 234
RLF NM++G SM+ +L I+ PVL V L +QAYIF
Sbjct: 162 RLFGNMMSG------------SMILAILLSISPLIFPVLMQV----LGLLTGMVQAYIFS 205
Query: 235 VLACVYIG 242
VLA VYI
Sbjct: 206 VLATVYIA 213
>gnl|CDD|118689 pfam10161, DDDD, Putative mitochondrial precursor protein. This is
a family of small conserved proteins found from
nematodes to humans. The C-terminal region is rich in
asparagine. Members are putatively assigned to be
mitochondrial precursor proteins but this could not be
confirmed.
Length = 80
Score = 28.5 bits (64), Expect = 1.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 116 VTTSFSLLVVLSVVISGFYV------NGLGFLR---LFIPKD 148
F LL + VVI G Y+ N FL +F+P+D
Sbjct: 34 EKMPFGLLRIFFVVIPGLYIGALISKNFANFLEENDIFVPED 75
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional.
Length = 846
Score = 27.7 bits (61), Expect = 3.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 221 LEFFVAFMQAYIFMVLACVYIGD 243
L FV Q Y FM+L C I D
Sbjct: 304 LALFVGVNQHYQFMLLGCALISD 326
>gnl|CDD|182591 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 26.4 bits (59), Expect = 7.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 105 PYLFSFTSQIVVTTSFSLLVVLSVVISGFYV 135
FS +T F L ++L +V G V
Sbjct: 2 TTRFSLLPG-SITRFFLLFIILLLVTMGLMV 31
>gnl|CDD|152054 pfam11618, DUF3250, Protein of unknown function (DUF3250). This
family of proteins represents a protein with unknown
function. It may be the C2 domain from KIAA1005 however
this cannot be confirmed.
Length = 141
Score = 26.2 bits (58), Expect = 8.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 59 QSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFL-----TTANLLGLHPYLFSFTSQ 113
++ FE+ I +T + S +F P F + F TT + GL P + FTS
Sbjct: 9 ENLFEL--HLIKATETPAGLELSGDFSPTTFCTYDFYDFETHTTPVVRGLQP-FYDFTSS 65
Query: 114 IVVTTSFSLL 123
V LL
Sbjct: 66 YCVAMDALLL 75
>gnl|CDD|162649 TIGR01995, PTS-II-ABC-beta, PTS system, beta-glucoside-specific
IIABC component. This model represents a family of PTS
enzyme II proteins in which all three domains are found
in the same polypeptide chain and which appear to have a
broad specificity for beta-glucosides including salicin
(beta-D-glucose-1-salicylate) and arbutin
(Hydroquinone-O-beta-D-glucopyranoside). These are
distinct from the closely related sucrose-specific and
trehalose-specific PTS transporters.
Length = 610
Score = 26.2 bits (58), Expect = 8.8
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 177 FANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIF 233
+ G +K F F+ ++ + M ++ + + F V+F+ Y
Sbjct: 387 VGGAIIGIGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLTYFI 443
>gnl|CDD|183198 PRK11560, PRK11560, phosphoethanolamine transferase; Provisional.
Length = 558
Score = 25.8 bits (57), Expect = 9.9
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 106 YLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLF--------IPKDIPLLIKPLV 157
Y+ S T Q L +L+V I G ++N F R F + K + +++ L
Sbjct: 3 YIKSLTQQ-------KLSFLLAVYI-GLFLNIAVFYRRFDSYAQDFTVWKGLSAVVE-LA 53
Query: 158 CFIEVSSFLFRPVSLSLRLFANMLAGHLML 187
+ V+ FL R +SL R F +LA L+L
Sbjct: 54 ATVLVTFFLLRLLSLFGRRFWRVLASLLVL 83
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.336 0.145 0.426
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,967,280
Number of extensions: 257867
Number of successful extensions: 1233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1199
Number of HSP's successfully gapped: 106
Length of query: 250
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,028,145
Effective search space: 640475055
Effective search space used: 640475055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (25.3 bits)