RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (250 letters)



>1c17_M ATP synthase subunit A; membrane protein, helix, complex;
           NMR {Escherichia coli} (M:)
          Length = 177

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 30/182 (16%)

Query: 80  QSKNFFPFVFSLFVFLTTANLLGL----------------HPYLFSFTSQIVVTTSFSLL 123
           +SK   P   ++FV++   NL+ L                       ++ + VT S +L 
Sbjct: 3   KSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALG 62

Query: 124 VVLSVVISGFYVNGLGFL--RLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANML 181
           V + ++     + G+G     L +         P+   +E  S L +PVSL LRLF NM 
Sbjct: 63  VFILILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMY 122

Query: 182 AGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYI 241
           AG L+  + AG                +   + NV        +  +QA+IFMVL  VY+
Sbjct: 123 AGELIFILIAGL------------LPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYL 170

Query: 242 GD 243
             
Sbjct: 171 SM 172


>2r17_C Vacuolar protein sorting-associated protein 35; protein
           transport, alternative splicing, cytoplasm, membrane,
           phosphorylation; 2.80A {Homo sapiens} (C:137-298)
          Length = 162

 Score = 26.3 bits (58), Expect = 4.1
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 27  TNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFF 85
            +  + + + +L  +I+ F+   N  V    L    + I + + +        Q    F
Sbjct: 95  PSLQVQLFIEILNRYIY-FYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHF 152


>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase,
           oxidoreductase; 2.05A {Ascophyllum nodosum} (A:106-556)
          Length = 451

 Score = 25.6 bits (55), Expect = 7.2
 Identities = 18/215 (8%), Positives = 38/215 (17%), Gaps = 15/215 (6%)

Query: 34  LVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFV 93
           L+ L                      +F    Y  ++                   S + 
Sbjct: 186 LLGLDAFNRAGVNGPFIDIDRQAGFVNFGISHYFRLIG-----------AAELAQRSSWY 234

Query: 94  FLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLI 153
                +       L       +     +   +  +  +                    + 
Sbjct: 235 QKWQVHRFARPEALGGTLHLTIKGELNADFDLSLLENAELLKRVA--AINAAQNPNNEVT 292

Query: 154 KPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVL 213
             L   I+  S                 A  L   +                       L
Sbjct: 293 YLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPD--PVYPDDDGLKL 350

Query: 214 ANVAVTGLEFFVAFMQAYIFMVLACVYIGDVYRSD 248
            +   + L F     +  + +      +G  YR D
Sbjct: 351 IDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFD 385


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.336    0.145    0.426 

Gapped
Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,711,604
Number of extensions: 69828
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 16
Length of query: 250
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 164
Effective length of database: 2,048,819
Effective search space: 336006316
Effective search space used: 336006316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (25.0 bits)