RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str. psy62] (250 letters) >1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli} (M:) Length = 177 Score = 89.8 bits (223), Expect = 3e-19 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 30/182 (16%) Query: 80 QSKNFFPFVFSLFVFLTTANLLGL----------------HPYLFSFTSQIVVTTSFSLL 123 +SK P ++FV++ NL+ L ++ + VT S +L Sbjct: 3 KSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALG 62 Query: 124 VVLSVVISGFYVNGLGFL--RLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANML 181 V + ++ + G+G L + P+ +E S L +PVSL LRLF NM Sbjct: 63 VFILILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMY 122 Query: 182 AGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYI 241 AG L+ + AG + + NV + +QA+IFMVL VY+ Sbjct: 123 AGELIFILIAGL------------LPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYL 170 Query: 242 GD 243 Sbjct: 171 SM 172 >2r17_C Vacuolar protein sorting-associated protein 35; protein transport, alternative splicing, cytoplasm, membrane, phosphorylation; 2.80A {Homo sapiens} (C:137-298) Length = 162 Score = 26.3 bits (58), Expect = 4.1 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 27 TNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFF 85 + + + + +L +I+ F+ N V L + I + + + Q F Sbjct: 95 PSLQVQLFIEILNRYIY-FYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHF 152 >1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} (A:106-556) Length = 451 Score = 25.6 bits (55), Expect = 7.2 Identities = 18/215 (8%), Positives = 38/215 (17%), Gaps = 15/215 (6%) Query: 34 LVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFV 93 L+ L +F Y ++ S + Sbjct: 186 LLGLDAFNRAGVNGPFIDIDRQAGFVNFGISHYFRLIG-----------AAELAQRSSWY 234 Query: 94 FLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLI 153 + L + + + + + + Sbjct: 235 QKWQVHRFARPEALGGTLHLTIKGELNADFDLSLLENAELLKRVA--AINAAQNPNNEVT 292 Query: 154 KPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVL 213 L I+ S A L + L Sbjct: 293 YLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPD--PVYPDDDGLKL 350 Query: 214 ANVAVTGLEFFVAFMQAYIFMVLACVYIGDVYRSD 248 + + L F + + + +G YR D Sbjct: 351 IDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFD 385 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.336 0.145 0.426 Gapped Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,711,604 Number of extensions: 69828 Number of successful extensions: 206 Number of sequences better than 10.0: 1 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 16 Length of query: 250 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 164 Effective length of database: 2,048,819 Effective search space: 336006316 Effective search space used: 336006316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 53 (25.0 bits)