BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (250 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 250

 Score =  488 bits (1255), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MSKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQS 60
           MSKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQS
Sbjct: 1   MSKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQS 60

Query: 61  FFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSF 120
           FFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSF
Sbjct: 61  FFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSF 120

Query: 121 SLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANM 180
           SLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANM
Sbjct: 121 SLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANM 180

Query: 181 LAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVY 240
           LAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVY
Sbjct: 181 LAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVY 240

Query: 241 IGDVYRSDQH 250
           IGDVYRSDQH
Sbjct: 241 IGDVYRSDQH 250


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score = 26.2 bits (56), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 240 YIGDVYRSDQH 250
           YIGD++RS QH
Sbjct: 290 YIGDIHRSGQH 300


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 25.8 bits (55), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 125 VLSVVISGFYVNGLGFLRLFIP-KDIPLLIKPLVCFIEVSSFLFRPVS 171
           V+   I+GFYVNG    + ++P     LL K     IE+SS   RPV+
Sbjct: 45  VIGTHITGFYVNGESSFQTYMPLVGSKLLDKLQSKDIEISS---RPVN 89


>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 347

 Score = 25.4 bits (54), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 144 FIPKDIPLLI--KPLVCFIEVSSFLF 167
           FIPK+IP L+  KP V F    S L+
Sbjct: 79  FIPKNIPCLLSDKPEVSFAIAGSILY 104


>gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 671

 Score = 22.7 bits (47), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 5   PMSQFIVQKIVPIQVQGFDLSF---TNSSLAMLVSLLVIFIFAFF 46
           PM   I+  +VP+Q+   D+SF    N S  M V+  V+ + + F
Sbjct: 127 PMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLF 171


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.336    0.145    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,181
Number of Sequences: 1233
Number of extensions: 5440
Number of successful extensions: 31
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 12
length of query: 250
length of database: 328,796
effective HSP length: 72
effective length of query: 178
effective length of database: 240,020
effective search space: 42723560
effective search space used: 42723560
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 37 (18.9 bits)