RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781089|ref|YP_003065502.1| hypothetical protein
CLIBASIA_04955 [Candidatus Liberibacter asiaticus str. psy62]
(80 letters)
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA; 2.7A
{Escherichia coli} PDB: 2j5p_A* (A:136-512)
Length = 377
Score = 27.6 bits (60), Expect = 0.66
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 1 MGLSESGKTTLLEAIFLFG 19
G + SG + + A+ L
Sbjct: 38 AGTTGSGASVGVNAMILSM 56
>2cxx_A Probable GTP-binding protein ENGB; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii OT3} (A:)
Length = 190
Score = 27.4 bits (59), Expect = 0.66
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G S GK+TL+ +
Sbjct: 7 AGRSNVGKSTLIYRL 21
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase;
HET: ADP; 2.31A {Aquifex aeolicus} (A:369-546)
Length = 178
Score = 27.2 bits (59), Expect = 0.80
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 1 MGLSESGKTTLLEAIF 16
GL +GK+T+ E +
Sbjct: 10 TGLPCAGKSTIAEILA 25
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
(A:)
Length = 192
Score = 27.4 bits (59), Expect = 0.81
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFF 51
G+ G TT + L + V ++K +
Sbjct: 9 TGVPGVGSTTSSQLA-----MDNLRKEGVNYKMVSFGSVMFEVAKEENLVS 54
>3a00_A Guanylate kinase, GMP kinase; domain movement,
dimerization, acetylation, ATP-binding,
nucleotide-binding, phosphoprotein, transferase; 1.80A
{Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A*
2zzz_A 2zzy_A (A:)
Length = 186
Score = 27.0 bits (58), Expect = 0.92
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1 MGLSESGKTTLLEAIF 16
G S +GK+TLL+ +F
Sbjct: 7 SGPSGTGKSTLLKKLF 22
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif,
ATP binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A (A:1-182)
Length = 182
Score = 27.0 bits (59), Expect = 0.98
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 1 MGLSESGKTTLLEAI 15
GL GK+T + +
Sbjct: 10 TGLPGVGKSTFSKNL 24
>1f60_A Elongation factor EEF1A; protein-protein complex,
translation; 1.67A {Saccharomyces cerevisiae} (A:1-238)
Length = 238
Score = 26.8 bits (57), Expect = 1.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 1 MGLSESGKTTLLEAIF 16
+G +SGK+T +
Sbjct: 13 IGHVDSGKSTTTGHLI 28
>2qpt_A EH domain-containing protein-2; protein-nucleotide
complex, membrane protein, endocytosis; HET: ANP; 3.10A
{Mus musculus} (A:58-294)
Length = 237
Score = 26.7 bits (57), Expect = 1.1
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 1 MGLSESGKTTLLEAIF 16
G +GKT+ ++ +
Sbjct: 14 AGQYSTGKTSFIQYLL 29
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase;
HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* (A:)
Length = 263
Score = 26.5 bits (58), Expect = 1.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G S SGK+T L + L
Sbjct: 56 IGPSGSGKSTFLRCLNLL 73
>1ji0_A ABC transporter; ATP binding protein, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} (A:)
Length = 240
Score = 26.4 bits (58), Expect = 1.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1 MGLSESGKTTLLEAIF 16
+G + +GKTT L AI
Sbjct: 38 IGANGAGKTTTLSAIA 53
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl
transferase, ribosylnicotinamide kinase; HET: NAD;
2.90A {Haemophilus influenzae} (A:162-365)
Length = 204
Score = 26.4 bits (57), Expect = 1.4
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
+G SGK+ L+ + + + F+ + QY + +
Sbjct: 15 LGGESSGKSVLVNKLA---AVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQXALGHQR 71
Query: 61 FILSEKMDIPHVFLPMVHFP 80
+I + F
Sbjct: 72 YIDYAVRHSHKIAFIDTDFI 91
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD,
16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP;
1.90A {Aquifex aeolicus} (A:1-190,A:295-308)
Length = 204
Score = 26.6 bits (57), Expect = 1.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G GK+TLL +
Sbjct: 16 VGKPNVGKSTLLNNL 30
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP;
2.10A {Mus musculus} (A:)
Length = 198
Score = 26.6 bits (57), Expect = 1.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
G S +GK+TLL+ +
Sbjct: 10 SGPSGAGKSTLLKKL 24
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, protein binding; 2.07A {Thermus thermophilus
HB8} (A:158-334)
Length = 177
Score = 26.3 bits (56), Expect = 1.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G +GK++LL A+
Sbjct: 6 VGYPNAGKSSLLAAM 20
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA ATG; 2.25A
{Pseudomonas aeruginosa} PDB: 2iuu_A* (A:183-574)
Length = 392
Score = 26.4 bits (57), Expect = 1.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G + SGK+ + A+
Sbjct: 38 AGTTGSGKSVGVNAM 52
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, periplasm, translation; 2.80A
{Escherichia coli K12} PDB: 3deg_C* (D:1-185)
Length = 185
Score = 26.3 bits (56), Expect = 1.6
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 1 MGLSESGKTTLLEAIF 16
+ + GK+TL + I
Sbjct: 10 IAHIDHGKSTLSDRII 25
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP;
2.57A {Sulfolobus acidocaldarius} (A:)
Length = 194
Score = 26.2 bits (56), Expect = 1.7
Identities = 7/62 (11%), Positives = 13/62 (20%), Gaps = 5/62 (8%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
G+ GK+T+L + L + D +
Sbjct: 7 TGIPGVGKSTVLAKV-----KEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLS 61
Query: 61 FI 62
Sbjct: 62 VE 63
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} (A:)
Length = 243
Score = 26.0 bits (56), Expect = 2.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 1 MGLSESGKTTLLEAIFLF 18
G S GK+T+ + F
Sbjct: 34 AGPSGGGKSTIFSLLERF 51
>1b0u_A Histidine permease; ABC transporter, transport protein;
HET: ATP; 1.50A {Salmonella typhimurium} (A:)
Length = 262
Score = 25.8 bits (56), Expect = 2.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G S SGK+T L I
Sbjct: 38 IGSSGSGKSTFLRCINFL 55
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase,
hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A
(A:69-307)
Length = 239
Score = 26.0 bits (55), Expect = 2.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 1 MGLSESGKTTLLEAIF 16
+G + GK+T L A+
Sbjct: 7 LGDMKRGKSTFLNALI 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC
cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus
aureus} (A:1-249)
Length = 249
Score = 25.9 bits (57), Expect = 2.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1 MGLSESGKTTLLEAIFLF 18
GL+ +GKTTLL + +
Sbjct: 53 YGLNGAGKTTLLNILNAY 70
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii OT3} (A:1-119,A:215-316)
Length = 221
Score = 25.6 bits (55), Expect = 2.2
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 1 MGLSESGKTTLLEAI 15
+G GK+T A
Sbjct: 6 VGKPNVGKSTFFSAA 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic,
GTP hydrolysis, YPT/RAB protein, endocytosis,
hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces
cerevisiae} (A:)
Length = 170
Score = 25.7 bits (54), Expect = 2.2
Identities = 3/15 (20%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GK++++
Sbjct: 9 LGEAAVGKSSIVLRF 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein LOLD; structural genomics, NPPSFA; 1.70A
{Aquifex aeolicus VF5} PDB: 2pcl_A (A:)
Length = 224
Score = 25.6 bits (56), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G S SGK+TLL + L
Sbjct: 36 IGASGSGKSTLLYILGLL 53
>1g29_1 MALK, maltose transport protein MALK; ATPase, active
transport, maltose uptake and regulation, sugar binding
protein; 1.90A {Thermococcus litoralis} (1:1-234)
Length = 234
Score = 25.9 bits (56), Expect = 2.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTT L I
Sbjct: 35 LGPSGCGKTTTLRMI 49
>3iby_A Ferrous iron transport protein B; G protein, G domain,
iron uptake, cell inner membrane, cell membrane,
GTP-binding, ION transport; 2.50A {Legionella
pneumophila} (A:1-169,A:253-256)
Length = 173
Score = 25.8 bits (55), Expect = 2.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G GKTTL A+
Sbjct: 7 IGNPNCGKTTLFNAL 21
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796;
ABC transporters, ATPase, walker-A, NBD, transport
protein; HET: ATP; 1.90A {Methanocaldococcus
jannaschii} (A:)
Length = 235
Score = 25.7 bits (56), Expect = 2.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1 MGLSESGKTTLLEAIFLF 18
MG S SGK+T+L I
Sbjct: 37 MGPSGSGKSTMLNIIGCL 54
>3dhw_C Methionine import ATP-binding protein METN;
ABC-transporter, methionine uptake transporter,
membrane protein, amino-acid transport; 3.70A
{Escherichia coli K12} (C:1-245)
Length = 245
Score = 25.7 bits (56), Expect = 2.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G S +GK+TL+ +
Sbjct: 37 IGASGAGKSTLIRCV 51
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} (A:)
Length = 247
Score = 25.6 bits (55), Expect = 2.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 1 MGLSESGKTTLLEAIFLFGE 20
+G S SGK+TL + I F
Sbjct: 41 VGRSGSGKSTLTKLIQRFYI 60
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide
binding domain, ABC motor domain, ferric iron
transport, cell inner membrane; HET: ATP; 1.90A
{Neisseria gonorrhoeae} (A:1-241)
Length = 241
Score = 25.6 bits (56), Expect = 2.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTTLL +
Sbjct: 36 IGASGCGKTTLLRCL 50
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
(A:)
Length = 183
Score = 25.6 bits (55), Expect = 2.4
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 1 MGLSESGKTTLLEAI 15
G GKT +
Sbjct: 11 NGPFGVGKTHTAHTL 25
>3e70_C DPA, signal recognition particle receptor; FTSY,
SRP-GTPase, protein-targeting, transport protein; HET:
GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
(C:115-314)
Length = 200
Score = 25.8 bits (55), Expect = 2.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + SGKTT + +
Sbjct: 21 VGFNGSGKTTTIAKL 35
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} (A:1-224)
Length = 224
Score = 25.6 bits (56), Expect = 2.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GKT LE I
Sbjct: 32 LGPTGAGKTLFLELI 46
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma,
dimer, immunology, signaling protein; HET: GDP; 1.95A
{Mus musculus} (A:69-265)
Length = 197
Score = 25.5 bits (54), Expect = 2.5
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G + SGK++ + +
Sbjct: 7 TGETGSGKSSFINTL 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain,
tandem G-domains, ligand binding protein; HET: GDP;
1.90A {Thermotoga maritima} (A:1-173)
Length = 173
Score = 25.4 bits (54), Expect = 2.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 1 MGLSESGKTTLLEAI 15
+G GK+TL +
Sbjct: 7 VGRPNVGKSTLFNKL 21
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.40A {Bacillus halodurans
c-125} (A:)
Length = 189
Score = 25.4 bits (54), Expect = 2.5
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 1 MGLSESGKTTLLEAI 15
G + GK+T + +
Sbjct: 8 TGPAGVGKSTTCKRL 22
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein.,
structural genomics, PSI, protein structure initiative;
3.20A {Agrobacterium tumefaciens str} (A:)
Length = 191
Score = 25.4 bits (54), Expect = 2.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
G SGK+T+ EA+
Sbjct: 15 SGHPGSGKSTIAEAL 29
>1z47_A CYSA, putative ABC-transporter ATP-binding protein;
alpha/beta motif, beta sandwich, ligand binding
protein; 1.90A {Alicyclobacillus acidocaldarius}
(A:1-237)
Length = 237
Score = 25.3 bits (55), Expect = 2.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G S SGKTT+L I
Sbjct: 47 LGPSGSGKTTILRLI 61
>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD,
ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A (A:)
Length = 229
Score = 25.5 bits (55), Expect = 2.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 1 MGLSESGKTTLLEAIF 16
G + +GKT+LL I
Sbjct: 40 AGSTGAGKTSLLMMIM 55
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein
AQ_1292; mixed alpha-beta protein, rossman fold,
signaling protein, transferase; 1.40A {Aquifex
aeolicus} (A:)
Length = 178
Score = 25.4 bits (55), Expect = 2.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G GKTTL++ I
Sbjct: 6 TGEPGVGKTTLVKKI 20
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP,
GTPase, signaling protein; HET: GDP; 1.50A {Saguinus
oedipus} (A:)
Length = 168
Score = 25.6 bits (54), Expect = 2.7
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 1 MGLSESGKTTLLEAI 15
+G GK+ L
Sbjct: 10 VGSGGVGKSALTLQF 24
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold,
GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi}
(A:)
Length = 262
Score = 25.5 bits (54), Expect = 2.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G + SGKTTL
Sbjct: 20 VGTAGSGKTTLTGEF 34
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein;
ABC-ATPase, ATP-binding cassette, ATPase, transport
protein; 1.45A {Sulfolobus solfataricus} (K:1-243)
Length = 243
Score = 25.7 bits (56), Expect = 2.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G S +GKTT + I
Sbjct: 37 LGPSGAGKTTFMRII 51
>1v43_A Sugar-binding transport ATP-binding protein; ATPase,
active transport, sugar uptake and regulation,
transport protein; 2.20A {Pyrococcus horikoshii}
(A:1-239)
Length = 239
Score = 25.4 bits (55), Expect = 2.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTT L I
Sbjct: 43 LGPSGCGKTTTLRMI 57
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate
binding, T-state; HET: PPS; 2.60A {Penicillium
chrysogenum} (A:392-573)
Length = 182
Score = 25.3 bits (54), Expect = 2.8
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 1 MGLSESGKTTLLEAI 15
G SGK + A+
Sbjct: 11 TGYMNSGKDAIARAL 25
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B;
mixed alpha-beta fold, elongated beta-sheet, walker A
motif, P-loop structural motif; 1.90A {Escherichia
coli} (A:)
Length = 174
Score = 25.2 bits (54), Expect = 2.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
S +GKTTLL+ +
Sbjct: 12 AAWSGTGKTTLLKKL 26
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus
j-10-fl} (A:)
Length = 193
Score = 25.3 bits (54), Expect = 2.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
G +GKTTL +A+
Sbjct: 11 TGHPATGKTTLSQAL 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470;
putative iron chelatin ABC transporter, nucleotide
binding domain; 2.40A {Haemophilus influenzae}
(C:1-214)
Length = 214
Score = 25.2 bits (55), Expect = 2.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GK+TLL+ +
Sbjct: 37 LGQNGCGKSTLLDLL 51
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A
{Saccharomyces cerevisiae} (A:)
Length = 203
Score = 25.4 bits (54), Expect = 3.0
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 1 MGLSESGKTTLLEAI 15
+G +GK T E +
Sbjct: 21 LGGPGAGKGTQCEKL 35
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar
transport, alpha and beta proteins (A/B) class, TM0421,
structural genomics, NPPSFA; 2.11A {Thermotoga maritima
MSB8} (A:1-225)
Length = 225
Score = 25.4 bits (55), Expect = 3.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTT L +
Sbjct: 35 LGPSGCGKTTTLLML 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222;
cobalt transport, hydrolase, inner membrane, membrane,
nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
(A:)
Length = 266
Score = 25.3 bits (55), Expect = 3.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
G + SGK+TLL+ +
Sbjct: 39 AGNTGSGKSTLLQIV 53
>1qzx_A SRP54, signal recognition 54 kDa protein; signal
recognition particle, protein targeting, signaling
protein; 4.00A {Sulfolobus solfataricus} (A:98-290)
Length = 193
Score = 25.3 bits (54), Expect = 3.2
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G+ SGKTT +
Sbjct: 13 VGVQGSGKTTTAGKL 27
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori 26695} PDB: 1zui_A* (A:)
Length = 168
Score = 25.3 bits (54), Expect = 3.2
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 1 MGLSESGKTTLLEAIF 16
+G SGK++L + +
Sbjct: 13 IGFMGSGKSSLAQELG 28
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii} (A:1-231)
Length = 231
Score = 25.3 bits (55), Expect = 3.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G S SGK+TLL I
Sbjct: 35 LGPSGSGKSTLLYTI 49
>2j37_W Signal recognition particle 54 kDa protein (SRP54);
ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB:
1wgw_A (W:96-285)
Length = 190
Score = 25.3 bits (55), Expect = 3.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+GL SGKTT +
Sbjct: 12 VGLQGSGKTTTCSKL 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural
genomics, cell membrane, cobalt transport, hydrolase,
ION transport; 2.30A {Clostridium perfringens atcc
13124} (A:1-230)
Length = 230
Score = 25.3 bits (55), Expect = 3.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GK+TL +
Sbjct: 40 LGGNGVGKSTLFQNF 54
>1g7s_A Translation initiation factor IF2/EIF5B; translational
GTPase; HET: GDP; 2.00A
{Methanothermobacterthermautotrophicus} (A:5-221)
Length = 217
Score = 25.1 bits (53), Expect = 3.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1 MGLSESGKTTLLEAIF 16
+G + GKTTLL+ I
Sbjct: 7 LGHVDHGKTTLLDHIR 22
>2h5e_A Peptide chain release factor RF-3; beta barrel,
translation; HET: GDP; 2.80A {Escherichia coli} PDB:
2o0f_A (A:1-168,A:240-278)
Length = 207
Score = 25.3 bits (54), Expect = 3.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+ ++GKTT+ E +
Sbjct: 19 ISHPDAGKTTITEKV 33
>2qy9_A Cell division protein FTSY; SRP receptor, protein
targeting, simibi class GTPase, cell cycle,
GTP-binding, inner membrane, membrane; 1.90A
{Escherichia coli} (A:93-290)
Length = 198
Score = 25.1 bits (53), Expect = 3.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G++ GKTT + +
Sbjct: 13 VGVNGVGKTTTIGKL 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur
cluster, ABC-ATPase, ATP-binding, cytoplasm,
nucleotide-binding; HET: MES; 2.20A {Escherichia coli}
PDB: 2d3w_A (C:)
Length = 267
Score = 25.2 bits (54), Expect = 3.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
MG + SGK+TL +
Sbjct: 52 MGPNGSGKSTLSATL 66
>2o5v_A DNA replication and repair protein RECF; ABC ATPase,
walker A motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans} (A:1-123,A:293-359)
Length = 190
Score = 25.0 bits (55), Expect = 3.6
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 2 GLSESGKTTLLEAI-FLFGE 20
G + +GKT LLEA
Sbjct: 33 GENGAGKTNLLEAAYLALTG 52
>2v3c_C SRP54, signal recognition 54 kDa protein;
nucleotide-binding, signal recognition particle,
GTP-binding, RNA-binding; 2.50A {Methanocaldococcus
jannaschii} (C:92-279)
Length = 188
Score = 25.1 bits (54), Expect = 3.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G+ SGKTT + +
Sbjct: 14 VGIQGSGKTTTAAKLARY 31
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA,
signal recognition particle, SRP-GTPase, protein
targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A
{Pyrococcus furiosus} (A:94-285)
Length = 192
Score = 24.9 bits (54), Expect = 3.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G+ SGKTT + +
Sbjct: 13 VGIQGSGKTTTVAKL 27
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC
transporter, lipid flippase, hydrolase, inner membrane,
lipid transport, membrane; 5.50A {Vibrio cholerae}
(A:324-582)
Length = 259
Score = 24.9 bits (53), Expect = 3.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G S SGK+T+ F
Sbjct: 52 VGRSGSGKSTIANLFTRF 69
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(A:1-228)
Length = 228
Score = 24.9 bits (54), Expect = 3.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GK+ LE I
Sbjct: 30 LGPTGAGKSVFLELI 44
>2oap_1 GSPE-2, type II secretion system protein; hexameric
ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus
fulgidus dsm 4304} PDB: 2oaq_1 (1:261-446)
Length = 186
Score = 24.8 bits (53), Expect = 4.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 6 SGKTTLLEAIFLF 18
SGKTT L AI F
Sbjct: 11 SGKTTTLNAIXXF 23
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA
binding protein; HET: GDP; 1.94A {Bos taurus} (A:1-197)
Length = 197
Score = 25.0 bits (53), Expect = 4.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1 MGLSESGKTTLLEAIF 16
+G + GKTTL AI
Sbjct: 9 IGHVDHGKTTLTAAIT 24
>1nrj_B SR-beta, signal recognition particle receptor beta
subunit; transmembrane, endoplasmic reticulum,
GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae}
(B:)
Length = 218
Score = 24.9 bits (53), Expect = 4.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G SGKT+LL +
Sbjct: 18 AGPQNSGKTSLLTLL 32
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} (A:)
Length = 175
Score = 24.9 bits (53), Expect = 4.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
MG+S SGK+ + +
Sbjct: 14 MGVSGSGKSAVASEV 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain,
tandem G-domains, ligand binding protein; HET: GDP;
1.90A {Thermotoga maritima} (A:174-359)
Length = 186
Score = 24.6 bits (52), Expect = 4.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G GK+TL AI
Sbjct: 13 VGRPNVGKSTLFNAI 27
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate
pathway, P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} (A:)
Length = 173
Score = 24.6 bits (52), Expect = 4.3
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 1 MGLSESGKTTLLEAI 15
+G G TT+ +
Sbjct: 8 VGARGCGMTTVGREL 22
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome
biogenesis, hydrolyase/translation complex; HET: ADP;
1.90A {Pyrococcus furiosus} (A:277-489)
Length = 213
Score = 24.5 bits (53), Expect = 4.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GKTT ++ +
Sbjct: 42 VGPNGIGKTTFVKXL 56
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum 3D7} (A:)
Length = 228
Score = 24.7 bits (52), Expect = 4.6
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 1 MGLSESGKTTLLEAI 15
G GK++ + +
Sbjct: 35 SGAPNVGKSSFMNIV 49
>2fh5_B SR-beta, signal recognition particle receptor beta
subunit; endomembrane targeting, GTPase, GAP, longin
domain, SEDL, transport protein; HET: GTP; 2.45A {Mus
musculus} (B:)
Length = 214
Score = 24.7 bits (52), Expect = 4.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+GL +SGKT L +
Sbjct: 13 VGLCDSGKTLLFVRL 27
>2ghi_A Transport protein; multidrug resistance protein, MDR,
structural genomics, structural genomics consortium,
SGC; 2.20A {Plasmodium yoelii yoelii str} (A:)
Length = 260
Score = 24.5 bits (52), Expect = 5.1
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G + SGK+T+ + ++ F
Sbjct: 52 VGHTGSGKSTIAKLLYRF 69
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor,
protein transport; 1.95A {Mycoplasma mycoides} PDB:
1zu5_A (A:97-299)
Length = 203
Score = 24.6 bits (52), Expect = 5.1
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1 MGLSESGKTTLLEAIF 16
+G++ +GKTT L +
Sbjct: 15 VGVNGTGKTTSLAKMA 30
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* (A:172-364)
Length = 193
Score = 24.6 bits (52), Expect = 5.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + SGKT+L ++
Sbjct: 14 VGYTNSGKTSLFNSL 28
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase,
iron-sulfur cluster, adenosine diphosphate,
nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
(A:347-572)
Length = 226
Score = 24.6 bits (53), Expect = 5.3
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GKTT ++ +
Sbjct: 42 VGPNGIGKTTFVKML 56
>2pjz_A Hypothetical protein ST1066; ATP binding protein,
structural genomics, NPPSFA; 1.90A {Sulfolobus
tokodaii} (A:)
Length = 263
Score = 24.6 bits (53), Expect = 5.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 1 MGLSESGKTTLLEAI 15
+G + SGKTTLL AI
Sbjct: 36 LGPNGSGKTTLLRAI 50
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} (A:)
Length = 171
Score = 24.3 bits (51), Expect = 5.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+GL +GKTT+L +
Sbjct: 13 LGLDGAGKTTILYRL 27
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP
kinase, transferase; NMR {Streptococcus pneumoniae}
(A:1-47,A:135-236)
Length = 149
Score = 24.3 bits (53), Expect = 5.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
G + SGK+T+ + I
Sbjct: 22 DGPASSGKSTVAKII 36
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction,
transferase; HET: AMP; 2.3A {Homo sapiens} (A:)
Length = 199
Score = 24.2 bits (51), Expect = 5.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 1 MGLSESGKTTLLEAI 15
+G SGK T E +
Sbjct: 18 IGGPGSGKGTQCEKL 32
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop
protein, GTP binding, structure 2 function project,
S2F, unknown function; 2.00A {Escherichia coli}
(A:1-204)
Length = 204
Score = 24.5 bits (52), Expect = 6.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G +GKTTLL I
Sbjct: 10 TGFLGAGKTTLLRHI 24
>1z6g_A Guanylate kinase; structural genomics, SGC, structural
genomics consortium, transferase; HET: EPE; 2.18A
{Plasmodium falciparum 3D7} (A:1-55,A:105-218)
Length = 169
Score = 24.4 bits (53), Expect = 6.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G S GK TL++ +
Sbjct: 29 CGPSGVGKGTLIKKL 43
>1e69_A Chromosome segregation SMC protein; structural maintenance
of chromosomes, coiled coil; 3.1A {Thermotoga maritima}
(A:1-135,A:241-322)
Length = 217
Score = 24.3 bits (53), Expect = 6.4
Identities = 8/16 (50%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 6 SGKTTLLEAI-FLFGE 20
SGK+ +++AI ++FGE
Sbjct: 35 SGKSNIIDAIKWVFGE 50
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner
membrane, membrane, transmembrane, transport, ATP-
binding, hydrolase, nucleotide-binding, periplasm; HET:
1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* (C:)
Length = 249
Score = 24.2 bits (52), Expect = 6.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 1 MGLSESGKTTLL 12
+G + +GK+TLL
Sbjct: 32 VGPNGAGKSTLL 43
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics,
PSI-2, protein structure initiative; 1.80A {Escherichia
coli K12} (A:1-265)
Length = 265
Score = 23.9 bits (50), Expect = 7.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G +GK+T LEA
Sbjct: 62 TGTPGAGKSTFLEAF 76
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG,
stringent factor, stress response, sporulation, large
G-protein, structural genomics, PSI; HET: G4P; 2.60A
{Bacillus subtilis} (A:159-342)
Length = 184
Score = 23.9 bits (50), Expect = 7.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G GK+TLL +
Sbjct: 6 VGFPSVGKSTLLSVV 20
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
(A:1-114)
Length = 114
Score = 23.8 bits (51), Expect = 7.6
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 1 MGLSESGKTTLLEAI 15
+G SGK+T
Sbjct: 8 IGCPGSGKSTWAREF 22
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
(A:)
Length = 237
Score = 23.8 bits (50), Expect = 7.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G GK++LL A+
Sbjct: 37 VGQVGCGKSSLLSALLAE 54
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding,
nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus
aureus} (A:1-38,A:88-207)
Length = 158
Score = 23.6 bits (51), Expect = 8.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 1 MGLSESGKTTLLEAI 15
G S GK T+ + I
Sbjct: 12 SGPSGVGKGTVRKRI 26
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase;
2.10A {Mycobacterium tuberculosis} (A:1-50,A:103-207)
Length = 155
Score = 23.8 bits (52), Expect = 9.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G S GK+T++ +
Sbjct: 26 SGPSAVGKSTVVRCL 40
>1sgw_A Putative ABC transporter; structural genomics, PSI,
protein structure initiative, southeast collaboratory
for structural genomics; 1.70A {Pyrococcus furiosus dsm
3638} (A:1-88,A:151-214)
Length = 152
Score = 23.8 bits (52), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1 MGLSESGKTTLLEAIFLF 18
G + GKTTLL+ I +
Sbjct: 41 HGPNGIGKTTLLKTISTY 58
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.142 0.407
Gapped
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 575,641
Number of extensions: 20889
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 107
Length of query: 80
Length of database: 4,956,049
Length adjustment: 44
Effective length of query: 36
Effective length of database: 3,468,629
Effective search space: 124870644
Effective search space used: 124870644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)