BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781089|ref|YP_003065502.1| hypothetical protein
CLIBASIA_04955 [Candidatus Liberibacter asiaticus str. psy62]
(80 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781089|ref|YP_003065502.1| hypothetical protein CLIBASIA_04955 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 80
Score = 160 bits (406), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ
Sbjct: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
Query: 61 FILSEKMDIPHVFLPMVHFP 80
FILSEKMDIPHVFLPMVHFP
Sbjct: 61 FILSEKMDIPHVFLPMVHFP 80
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 24.6 bits (52), Expect = 0.36, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 24 LALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQFILSEKMDIPHVFLPMVH 78
L +S+ + V GI+ + YG GK+ ++S DI F + H
Sbjct: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 24.3 bits (51), Expect = 0.47, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 1 MGLSESGKTTLLEAI 15
MGLS +GK+TLL +I
Sbjct: 61 MGLSGAGKSTLLRSI 75
>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 737
Score = 23.5 bits (49), Expect = 0.70, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 20 EALALALSNDPVSVFLKSDVFDGISK 45
E ALA S+D ++K+D F+G +
Sbjct: 446 ETKALAFSSDVTPRYVKADPFEGTKQ 471
>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 692
Score = 22.3 bits (46), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 36 KSDVFDGISK------NQYGFFTGKIKVDAQFILSEK 66
+ D+F +SK QYGF +IKV L EK
Sbjct: 376 QEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEK 412
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 22.3 bits (46), Expect = 1.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 1 MGLSESGKTTLLEAI--FLFGEALALALSNDPVSVFLKSDVFDGISKNQ 47
+GL+ +GK+TL +AI + + ++++ N V LK+D+ I + +
Sbjct: 44 IGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTE 92
>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 271
Score = 21.9 bits (45), Expect = 2.0, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 46 NQYGFFTGKIKVD 58
NQ GF GKI VD
Sbjct: 211 NQKGFVLGKINVD 223
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 21.6 bits (44), Expect = 3.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 2 GLSESGKTTLLEAI--FLFGE 20
GLS +GKTTL ++ FL G+
Sbjct: 225 GLSGTGKTTLSASVDRFLIGD 245
>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 536
Score = 20.8 bits (42), Expect = 5.2, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 20 EALALALSNDPVSVF 34
EA ALS DP+S F
Sbjct: 304 EAYRRALSCDPISAF 318
>gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 182
Score = 20.4 bits (41), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 29 DPVSVFLKSDVFDGISKNQYGFFTGKI 55
DPV VFLK+ V + + F I
Sbjct: 154 DPVCVFLKNIVISLVKYDSIKLFPNTI 180
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 20.0 bits (40), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G S SGK+TLL I
Sbjct: 49 LGRSGSGKSTLLRII 63
>gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 142
Score = 19.6 bits (39), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 26 LSNDPVSVFLKSDV 39
+S PVS FLK +V
Sbjct: 71 MSQPPVSFFLKKEV 84
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.142 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,767
Number of Sequences: 1233
Number of extensions: 1779
Number of successful extensions: 13
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 80
length of database: 328,796
effective HSP length: 49
effective length of query: 31
effective length of database: 268,379
effective search space: 8319749
effective search space used: 8319749
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)