Query         gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 23:21:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781090.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ycd_A Hypothetical 27.3 kDa   40.4      31 0.00092   17.5   3.4   28   27-54     14-56  (58)
  2 >1j2z_A Acyl-[acyl-carrier-pro  18.5      89  0.0026   15.0   3.1   33   22-54     15-47  (67)
  3 >3hsq_A Acyl-[acyl-carrier-pro  16.4   1E+02   0.003   14.7   3.0   33   22-54     16-48  (57)
  4 >1rbl_M Ribulose 1,5 bisphosph  16.1      38  0.0011   17.0   0.2   54    7-62     33-88  (109)
  5 >2ql3_A Probable transcription  13.1      47  0.0014   16.5  -0.1   25   45-69     21-45  (110)
  6 >3hot_A Transposable element m  12.2      91  0.0027   14.9   1.2   46   18-63     15-61  (65)
  7 >1yvl_A Signal transducer and   12.0      46  0.0014   16.6  -0.4   16   42-57     59-74  (104)
  8 >2dl6_A Chromodomain-helicase-  11.2      62  0.0018   15.8   0.1   26   38-63     32-57  (83)
  9 >2aqx_A Predicted: inositol 1,  10.0 1.5E+02  0.0043   13.8   1.6   20   24-43     12-31  (55)
 10 >3c68_A Uncharacterized protei   9.9 1.4E+02  0.0042   13.9   1.5   14   27-40     23-36  (42)

No 1  
>>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} (A:44-101)
Probab=40.39  E-value=31  Score=17.50  Aligned_cols=28  Identities=29%  Similarity=0.503  Sum_probs=22.0

Q ss_pred             CCHHHHHHHHHHC---------------CHHHHHHHHHHHHHH
Q ss_conf             4378899898620---------------116679999999631
Q gi|254781090|r   27 TSKDKYQKIVKIG---------------DHAESIKTLADFIKD   54 (71)
Q Consensus        27 tskdkyqkivkig---------------dhaesiktladfikd   54 (71)
                      -++.|.|.+|.-|               +-+|+++++.|.||+
T Consensus        14 ~~dekW~~tvda~~Nr~Wf~H~d~s~~lgl~eai~yv~dhIk~   56 (58)
T 1ycd_A           14 MDDEKWQATLDADVNRAWFYHSEISHELDISEGLKSVVDHIKA   56 (58)
T ss_dssp             CCHHHHHHHHHTTCCEESSCCCSSGGGCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             5776664334777541110366531065499999999998501


No 2  
>>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA; HET: SOG TLA; 2.10A {Helicobacter pylori} (A:204-270)
Probab=18.46  E-value=89  Score=14.99  Aligned_cols=33  Identities=12%  Similarity=0.227  Sum_probs=26.8

Q ss_pred             HHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             233864378899898620116679999999631
Q gi|254781090|r   22 YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD   54 (71)
Q Consensus        22 yrsgktskdkyqkivkigdhaesiktladfikd   54 (71)
                      ||+|.+-.+--+.+-..-....-+..+.+||..
T Consensus        15 fr~gl~~~eal~~i~~~~~~~pev~~~~~Fi~~   47 (67)
T 1j2z_A           15 FRPIPSLRESAKLELEEHANNPFVKEICSFILE   47 (67)
T ss_dssp             TCSSSCHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             856876999999998773799899999999971


No 3  
>>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* (A:203-259)
Probab=16.44  E-value=1e+02  Score=14.71  Aligned_cols=33  Identities=24%  Similarity=0.545  Sum_probs=25.9

Q ss_pred             HHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             233864378899898620116679999999631
Q gi|254781090|r   22 YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD   54 (71)
Q Consensus        22 yrsgktskdkyqkivkigdhaesiktladfikd   54 (71)
                      ||+|.+-.+--..+-.--.....++.+.+||+.
T Consensus        16 y~~gl~~~eal~~l~~~~~~~pev~~~i~Fi~~   48 (57)
T 3hsq_A           16 YHSGISTRKALDELEASGNLIEQVKYIIKFFRD   48 (57)
T ss_dssp             HSSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             707998999999998514688999999999972


No 4  
>>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase (small chain); lyase(carbon-carbon); HET: CAP; 2.20A {Synechococcus elongatus pcc 6301} (M:)
Probab=16.10  E-value=38  Score=17.01  Aligned_cols=54  Identities=11%  Similarity=0.166  Sum_probs=35.9

Q ss_pred             HHHCCCCEEEEEEEHHHCCCCCHHHHHH--HHHHCCHHHHHHHHHHHHHHCCCCCEEH
Q ss_conf             1113460121123112338643788998--9862011667999999963188874007
Q gi|254781090|r    7 LLNGWGVNFRFLLDGYRSGKTSKDKYQK--IVKIGDHAESIKTLADFIKDYPDCDLEL   62 (71)
Q Consensus         7 llngwgvnfrflldgyrsgktskdkyqk--ivkigdhaesiktladfikdypdcdlel   62 (71)
                      |-+||.+...|--+++-.+..-.-  -|  .....|.++-+..|....+.||++-..|
T Consensus        33 l~qG~~i~iE~ad~r~~~~~~W~~--w~lP~f~~~d~~~Vl~ele~c~~~~p~~YVRl   88 (109)
T 1rbl_M           33 IEQGFHPLIEFNEHSNPEEFYWTM--WKLPLFACAAPQQVLDEVRECRSEYGDCYIRV   88 (109)
T ss_dssp             HHHTCEEEEEEESCCCTTCCCCEE--CSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHCCCEEEEEEEECCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             847880148870068734315023--25685236767899999999999799766989


No 5  
>>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP} (A:1-78,A:178-209)
Probab=13.09  E-value=47  Score=16.53  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHCCCCCEEHHHHHHHH
Q ss_conf             9999999631888740077543320
Q gi|254781090|r   45 IKTLADFIKDYPDCDLELENLVTDD   69 (71)
Q Consensus        45 iktladfikdypdcdlelenlvtdd   69 (71)
                      .+.+++|.+.||+..++++...+++
T Consensus        21 p~~L~~F~~~~P~I~i~i~~~~s~~   45 (110)
T 2ql3_A           21 PSXLYAFTAEYPRASVEFREDTQNR   45 (110)
T ss_dssp             HHHHHHHHHHCTTEEEEEEECCHHH
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf             9999999998889789999764677


No 6  
>>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:1-65)
Probab=12.17  E-value=91  Score=14.93  Aligned_cols=46  Identities=17%  Similarity=0.433  Sum_probs=37.2

Q ss_pred             EEEHHHCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCEEHH
Q ss_conf             23112338643788998986-20116679999999631888740077
Q gi|254781090|r   18 LLDGYRSGKTSKDKYQKIVK-IGDHAESIKTLADFIKDYPDCDLELE   63 (71)
Q Consensus        18 lldgyrsgktskdkyqkivk-igdhaesiktladfikdypdcdlele   63 (71)
                      +|-.++.|++..+-|..+.+ +|+++-+-.+..-+.+.+-.-+.+|+
T Consensus        15 ilyef~~g~~~~ea~~~~c~~~G~~~~~~~~~~~Wf~rF~~G~~dl~   61 (65)
T 3hot_A           15 LIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVD   61 (65)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             99999859989999999999846688878899999999864886667


No 7  
>>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} (A:580-683)
Probab=11.95  E-value=46  Score=16.57  Aligned_cols=16  Identities=31%  Similarity=0.430  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             6679999999631888
Q gi|254781090|r   42 AESIKTLADFIKDYPD   57 (71)
Q Consensus        42 aesiktladfikdypd   57 (71)
                      .-++++|||+|.|||-
T Consensus        59 dl~~~sL~d~I~~~~~   74 (104)
T 1yvl_A           59 ELSAVTFPDIIRNYKV   74 (104)
T ss_dssp             HHTTSCHHHHHHHCCE
T ss_pred             HHHHCCHHHHHHHHHH
T ss_conf             5532788899987788


No 8  
>>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=11.19  E-value=62  Score=15.84  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=22.9

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCEEHH
Q ss_conf             20116679999999631888740077
Q gi|254781090|r   38 IGDHAESIKTLADFIKDYPDCDLELE   63 (71)
Q Consensus        38 igdhaesiktladfikdypdcdlele   63 (71)
                      -|+.|-+.+.|.++.+..|++.+.-.
T Consensus        32 ~G~~AP~~k~L~~WL~~hP~y~v~p~   57 (83)
T 2dl6_A           32 VGEDAPRRAELEMWLQGHPEFAVDPR   57 (83)
T ss_dssp             CGGGSCBSTTHHHHHHHCTTSCBCHH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEECCC
T ss_conf             46668677799999998859577854


No 9  
>>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase B; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodulin binding, transferase; HET: ATP; 2.50A {Mus musculus} (A:98-152)
Probab=9.97  E-value=1.5e+02  Score=13.78  Aligned_cols=20  Identities=35%  Similarity=0.488  Sum_probs=15.1

Q ss_pred             CCCCCHHHHHHHHHHCCHHH
Q ss_conf             38643788998986201166
Q gi|254781090|r   24 SGKTSKDKYQKIVKIGDHAE   43 (71)
Q Consensus        24 sgktskdkyqkivkigdhae   43 (71)
                      +-+--+|-|||.|.+.-.|-
T Consensus        12 ~p~lR~DlY~KMi~vDp~aP   31 (55)
T 2aqx_A           12 KPSLRKDMYQKMVEVDPEAP   31 (55)
T ss_dssp             SCCCBHHHHHHHHHHCTTCS
T ss_pred             HHHCCCCHHHHHHCCCCCCC
T ss_conf             33102110100002465543


No 10 
>>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A (A:448-489)
Probab=9.91  E-value=1.4e+02  Score=13.86  Aligned_cols=14  Identities=21%  Similarity=0.624  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHCC
Q ss_conf             43788998986201
Q gi|254781090|r   27 TSKDKYQKIVKIGD   40 (71)
Q Consensus        27 tskdkyqkivkigd   40 (71)
                      +..++|+++|+-|+
T Consensus        23 ~Gl~~y~~Vv~~G~   36 (42)
T 3c68_A           23 SGLNNYARVVEKGQ   36 (42)
T ss_dssp             ECHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             11225667654320


Done!