Query gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:17:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781090.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ckca1 d.76.2.1 (A:2563-2622) 11.0 42 0.0031 14.6 1.2 25 37-61 18-42 (60)
2 d2ckaa1 d.76.2.1 (A:2028-2085) 10.1 48 0.0035 14.3 1.2 26 37-62 20-45 (58)
3 d1xria_ c.45.1.1 (A:) Putative 9.9 65 0.0047 13.6 2.0 27 13-39 6-33 (151)
4 d1f20a1 b.43.4.1 (A:963-1232) 9.2 64 0.0047 13.6 1.6 21 47-67 183-203 (270)
5 d1vcta1 a.7.12.1 (A:9-107) Hyp 8.7 61 0.0044 13.7 1.3 15 34-48 79-93 (99)
6 d1ixca2 c.94.1.1 (A:90-294) Ly 8.5 34 0.0025 15.1 -0.1 22 46-67 19-40 (205)
7 d1p9ya_ d.241.2.1 (A:) Trigger 8.3 76 0.0055 13.2 2.9 32 17-48 39-70 (117)
8 d2v0fa1 d.76.2.1 (A:2629-2715) 7.8 36 0.0026 15.0 -0.2 26 38-63 31-56 (87)
9 d2p0ta1 a.290.1.1 (A:22-169) U 6.3 95 0.0069 12.7 1.7 23 44-66 95-118 (148)
10 d1bf5a3 d.93.1.1 (A:569-710) S 6.3 43 0.0031 14.6 -0.5 12 44-55 72-83 (142)
No 1
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.01 E-value=42 Score=14.61 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.3
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 6201166799999996318887400
Q gi|254781090|r 37 KIGDHAESIKTLADFIKDYPDCDLE 61 (71)
Q Consensus 37 kigdhaesiktladfikdypdcdle 61 (71)
--|++|-+.+.|.++.+..|+-...
T Consensus 18 L~G~~AP~~~~L~~WL~~hP~y~Vd 42 (60)
T d2ckca1 18 LVGEDAPKNKDLVEWLKLHPTYTVD 42 (60)
T ss_dssp ECTTSSCBHHHHHHHHHHCTTEEES
T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 0476786777999999989891863
No 2
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.10 E-value=48 Score=14.32 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=22.0
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCEEH
Q ss_conf 62011667999999963188874007
Q gi|254781090|r 37 KIGDHAESIKTLADFIKDYPDCDLEL 62 (71)
Q Consensus 37 kigdhaesiktladfikdypdcdlel 62 (71)
-.|++|-+.+.|.++.+..|+-...-
T Consensus 20 L~G~~AP~~~~L~~WL~~nP~y~V~P 45 (58)
T d2ckaa1 20 LVGEDAPRRAELEMWLQGHPEFAVDP 45 (58)
T ss_dssp ECTTSSCBHHHHHHHHHHCTTEEECH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEECH
T ss_conf 35567967779999999888978884
No 3
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.85 E-value=65 Score=13.58 Aligned_cols=27 Identities=26% Similarity=0.616 Sum_probs=18.6
Q ss_pred CEEEEEEEH-HHCCCCCHHHHHHHHHHC
Q ss_conf 012112311-233864378899898620
Q gi|254781090|r 13 VNFRFLLDG-YRSGKTSKDKYQKIVKIG 39 (71)
Q Consensus 13 vnfrflldg-yrsgktskdkyqkivkig 39 (71)
.||+..-+| ||||.-+...++.+.+.|
T Consensus 6 ~nF~~V~~~lyRs~~~t~~~~~~L~~lg 33 (151)
T d1xria_ 6 LNFSMVDNGIFRSGFPDSANFSFLQTLG 33 (151)
T ss_dssp TTCEEEETTEEEESCCCHHHHHHHHHHT
T ss_pred CCCCEECCCCEECCCCCHHHHHHHHHCC
T ss_conf 1124335895665998987799999879
No 4
>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.24 E-value=64 Score=13.60 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCCCEEHHHHHH
Q ss_conf 999996318887400775433
Q gi|254781090|r 47 TLADFIKDYPDCDLELENLVT 67 (71)
Q Consensus 47 tladfikdypdcdlelenlvt 67 (71)
++.|++.+||.|.+.++.++.
T Consensus 183 tlldvL~~fps~~~pl~~ll~ 203 (270)
T d1f20a1 183 TMVEVLEEFPSIQMPATLLLT 203 (270)
T ss_dssp CHHHHHHHSTTBCBCHHHHHH
T ss_pred CHHHHHHHCCCCCCCHHHHHH
T ss_conf 699999862435899999997
No 5
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.74 E-value=61 Score=13.75 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=9.3
Q ss_pred HHHHHCCHHHHHHHH
Q ss_conf 898620116679999
Q gi|254781090|r 34 KIVKIGDHAESIKTL 48 (71)
Q Consensus 34 kivkigdhaesiktl 48 (71)
-+-.|||||..|-..
T Consensus 79 ~lERIgDha~nIae~ 93 (99)
T d1vcta1 79 AIEDISNAAGDLAKM 93 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 6
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=8.52 E-value=34 Score=15.12 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCCCCEEHHHHHH
Q ss_conf 9999996318887400775433
Q gi|254781090|r 46 KTLADFIKDYPDCDLELENLVT 67 (71)
Q Consensus 46 ktladfikdypdcdlelenlvt 67 (71)
..+++|.+.||+..+++....+
T Consensus 19 ~~l~~f~~~~P~v~l~i~~~~~ 40 (205)
T d1ixca2 19 LLLRAFLTSTPTATVSLTHMTK 40 (205)
T ss_dssp HHHHHHHHHCTTEEEEEEECCH
T ss_pred HHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999999988796899998877
No 7
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=8.28 E-value=76 Score=13.21 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEHHHCCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 12311233864378899898620116679999
Q gi|254781090|r 17 FLLDGYRSGKTSKDKYQKIVKIGDHAESIKTL 48 (71)
Q Consensus 17 flldgyrsgktskdkyqkivkigdhaesiktl 48 (71)
.-+.|+|-||....-..+...-.=++|.+..+
T Consensus 39 ~~ipGFRkGKvP~~vi~k~yg~~i~~e~~~~l 70 (117)
T d1p9ya_ 39 VRIDGLRKGKVPMNIVAQRYGASVRQDVLGDL 70 (117)
T ss_dssp CCCTTSCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888678876589999987488999999999
No 8
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.79 E-value=36 Score=14.97 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.3
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCEEHH
Q ss_conf 20116679999999631888740077
Q gi|254781090|r 38 IGDHAESIKTLADFIKDYPDCDLELE 63 (71)
Q Consensus 38 igdhaesiktladfikdypdcdlele 63 (71)
-|++|-..+.|.++.+..|++...-+
T Consensus 31 ~G~~AP~~~~L~~WL~~nP~y~V~P~ 56 (87)
T d2v0fa1 31 GGAMAPPMKDLPRWLEENPEFAVAPD 56 (87)
T ss_dssp CSSSSCBGGGHHHHHHHCTTEEECHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCEECCC
T ss_conf 45558227789999998889601732
No 9
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=6.33 E-value=95 Score=12.67 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCCCCEE-HHHHH
Q ss_conf 799999996318887400-77543
Q gi|254781090|r 44 SIKTLADFIKDYPDCDLE-LENLV 66 (71)
Q Consensus 44 siktladfikdypdcdle-lenlv 66 (71)
.-..+..|+..||+.|.. |-+||
T Consensus 95 ~~~al~e~~~~~P~~DrQ~LRqLi 118 (148)
T d2p0ta1 95 DDADLEKFVIEYPDADRQQLRSLI 118 (148)
T ss_dssp CHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 879999999988646799999999
No 10
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.29 E-value=43 Score=14.59 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHC
Q ss_conf 799999996318
Q gi|254781090|r 44 SIKTLADFIKDY 55 (71)
Q Consensus 44 siktladfikdy 55 (71)
++.+|||+|.||
T Consensus 72 ~~~sLad~Ird~ 83 (142)
T d1bf5a3 72 SAVTFPDIIRNY 83 (142)
T ss_dssp HSSCHHHHHHTC
T ss_pred CCCCHHHHHHHH
T ss_conf 208899998777
Done!