BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781090|ref|YP_003065503.1| hypothetical protein
CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score =  146 bits (369), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MKPIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDL 60
          MKPIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDL
Sbjct: 1  MKPIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDL 60

Query: 61 ELENLVTDDIL 71
          ELENLVTDDIL
Sbjct: 61 ELENLVTDDIL 71


>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 25.8 bits (55), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 48  LADFIKDYPDCDLELENLVTDDI 70
           L + + DYPDCD E+   + DD+
Sbjct: 144 LKESVIDYPDCDSEIMRGLDDDL 166



 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 30 DKYQKIVKIGDHAESIKTLADFIKDY 55
          DK     +IG    SI +L   IKDY
Sbjct: 9  DKRDASFRIGQFPSSIPSLDSSIKDY 34


>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 317

 Score = 25.0 bits (53), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 9/42 (21%)

Query: 36 VKIGDHAESIKTLADFIKDYPD--------CD-LELENLVTD 68
          V I  +  +IKT +D+++DYP         CD ++L  L+++
Sbjct: 58 VYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISE 99


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 22.7 bits (47), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 12  GVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDL 60
           GV+   L+   RS + +    + +VK+GD         D I D P  DL
Sbjct: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRR----NDIIADGPSTDL 802


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 429

 Score = 22.7 bits (47), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 2  KPIIHLLNGWGVNFRF 17
          KPI + L  WG++ RF
Sbjct: 22 KPITNSLKDWGMSHRF 37


>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 21.9 bits (45), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 37  KIGDHAESIKTLADFIKDYPDCD 59
           K+G    SI+ + D IK  PD +
Sbjct: 191 KLGVATRSIREMLDIIKSIPDVN 213


>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 869

 Score = 21.9 bits (45), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 32  YQKIVKIGDHAESIKTLADFIKDYPDCDLE 61
           YQ I  +    +SI    D+ KD+  CD++
Sbjct: 103 YQNIKVMRKQLQSIGLSIDWSKDFATCDVD 132


>gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 182

 Score = 21.2 bits (43), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 10 GWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTL 48
          G+ +++R LL  +RS       Y     +GD  +    L
Sbjct: 25 GFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPL 63


>gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 59

 Score = 20.8 bits (42), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 12 GVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54
          G+    + D Y +G T+K     + K G    SI T +  +KD
Sbjct: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 20.8 bits (42), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 35  IVKIGDHAESIKTLADFIKDYPDC 58
           I  I      ++T A F+K +P+C
Sbjct: 301 IASIDKKGRILRTNAHFLKLFPNC 324


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score = 20.8 bits (42), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 30  DKYQKIVKIGDHAESIKTLADFIKDYPDCDLEL 62
           D + +++K   HA  IKT+  F K   + D +L
Sbjct: 229 DSFFELLKAKSHALGIKTIYSFGKS-KNADFQL 260


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 20.4 bits (41), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 6/31 (19%)

Query: 14  NFRFLLD---GYRSGKTSKDKYQKIVKIGDH 41
           NFR +LD   GYR G+    +Y+  V+  D+
Sbjct: 463 NFRTILDSFVGYRRGRL---QYEFRVRAADN 490


>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 420

 Score = 20.0 bits (40), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 2   KPIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHA 42
           K II L +G   NF+  ++  +    +K+ + KIV I  +A
Sbjct: 331 KFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINA 371


>gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 200

 Score = 19.6 bits (39), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 17  FLLDGYRSGKTSKDKYQKIVKIGDHAESI 45
           ++L GYR+ +T+K   ++  KI   ++ +
Sbjct: 125 YILSGYRTQETNKMLSRRNRKIARKSQHV 153


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.144    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,502
Number of Sequences: 1233
Number of extensions: 1656
Number of successful extensions: 18
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 71
length of database: 328,796
effective HSP length: 42
effective length of query: 29
effective length of database: 277,010
effective search space:  8033290
effective search space used:  8033290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 31 (16.5 bits)