HHsearch alignment for GI: 254781091 and conserved domain: COG0403
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism].
Probab=99.16 E-value=2.7e-09 Score=76.06 Aligned_cols=286 Identities=21% Similarity=0.285 Sum_probs=165.5
Q ss_pred HHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 9999997298977898866853876445565442102245664587333212211122222----222222222222221
Q gi|254781091|r 51 RRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHF----PSHKIHKIPVLSKGI 126 (383)
Q Consensus 51 R~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~----~~~~v~~v~~~~~g~ 126 (383)
T Consensus 126 Qtlv~dLTGm~VANASm~DeaTAaAEAm~ma~---r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~---- 198 (450)
T COG0403 126 QTLVADLTGLDVANASMLDEATAAAEAMLMAK---RVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD---- 198 (450)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH---HHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCC----
T ss_conf 99999985887445002316769999999998---74147673499668868779999986112576399995642----
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC-CCCCHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 11023455324431135653265403434443-332112356520344653344--432336554444433431068730
Q gi|254781091|r 127 VDIQALTDFLEQRNSTCGIPMIAVMFVNNETG-VIQPIKEIAQIVKEYQGILVV--DAVQAAGRIPLSIEEIKADFLIIS 203 (383)
Q Consensus 127 i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG-~i~pi~~I~~~~~~~g~~~~v--D~aqa~g~~~id~~~~~~D~~~~S 203 (383)
T Consensus 199 -d~~~l~~~-~~~-~---~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDpl-aL~LL-~pPGe~GADIvvG~ 269 (450)
T COG0403 199 -DLDDLESA-DDG-D---VFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPL-ALGLL-KPPGEFGADIVVGS 269 (450)
T ss_pred -HHHHHHHC-CCC-C---EEEEEEECCC-CCCCCCHHHHHHHHHHHHCCCEEEEEECHH-HHHCC-CCCCCCCCCEEEEC
T ss_conf -25566532-467-7---3799997688-877341409999999863597799982636-76455-78410378669733
Q ss_pred CCCCC------CCCCCHHHHCCCCCCCCCCC-CCCCC-----------------CCCCCCCCCCCCCC---CCCHHHHH-
Q ss_conf 54332------23432011014574201221-22477-----------------42122222221122---21001221-
Q gi|254781091|r 204 SHKLG------APVGAGALVFREDILLPSPL-LRGGD-----------------QEKGQRAGTENYAV---IGGFAVAA- 255 (383)
Q Consensus 204 ~hK~~------GP~G~G~L~~r~~~~~~~p~-~~Gg~-----------------~e~~~~~GT~~~~~---i~~~~~al- 255 (383)
T Consensus 270 ~QrfGvPmgfGGPh-ag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y 348 (450)
T COG0403 270 AQRFGVPMGFGGPH-AGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMY 348 (450)
T ss_pred CCCCCCCCCCCCCC-EEEEEEHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 76047776788756-32223758674259984330464589980320128778888764001015548999999999999
Q ss_pred --HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf --100100245653210123333444443210001223221103652289857999999999987589699871133886
Q gi|254781091|r 256 --QQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSG 333 (383)
Q Consensus 256 --~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~ 333 (383)
T Consensus 349 ~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~---~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~------- 418 (450)
T COG0403 349 AVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD---HFFDTFTVRVPEEVAEALLAAAIAGGINLRR------- 418 (450)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC---CCEEEEEEECCHHHHHHHHHHHHHCCCCEEE-------
T ss_conf 998696889999999999999999987645886475142---4220488864636799999999854974145-------
Q ss_pred CCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 43310146762888747659999078889999999999999999
Q gi|254781091|r 334 KIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKII 377 (383)
Q Consensus 334 ~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~iv 377 (383)
T Consensus 419 -~-----------~--~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 419 -V-----------D--ADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred -E-----------C--CCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf -4-----------4--8815999512567899999999975331