HHsearch alignment for GI: 254781091 and conserved domain: COG1982
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.47 E-value=2.7e-12 Score=94.18 Aligned_cols=294 Identities=15% Similarity=0.160 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC--CC-
Q ss_conf 999999999972989778988668538764455654421022456645873332122111222222222222222--22-
Q gi|254781091|r 47 IEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPV--LS- 123 (383)
Q Consensus 47 ~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~--~~- 123 (383)
T Consensus 72 i~eAqe~aA~~fgAd~t-yFvvNGTS~ank~vi~a~~------~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~ 144 (557)
T COG1982 72 IKEAQELAARVFGADHT-YFVVNGTSTANKAVINAVL------TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPL 144 (557)
T ss_pred HHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHHC------CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 88999999998688862-9997782289999998603------8999899658763788889987488327841777854
Q ss_pred ---CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCC
Q ss_conf ---2211102345532443113565326540343444333211235652034465334443233655-----44444334
Q gi|254781091|r 124 ---KGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAGR-----IPLSIEEI 195 (383)
Q Consensus 124 ---~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g~-----~~id~~~~ 195 (383)
T Consensus 145 ~gi~ggI~~~~~~~al~~~~~~~--k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 145 YGIIGGIPLETFKEALLAHPDAE--KLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred CCCCCCCCHHHHHHHHHHCHHHH--HEEEEECCC-CCEEEECHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCHHHHC
T ss_conf 46537869899879998471304--068896485-324760599999997531866888645774335555574114545
Q ss_pred CCEEEEECCCCCCCCCC-CHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHH----HHHHH
Q ss_conf 31068730543322343-201101457-4201221224774212222222112221001221100100245----65321
Q gi|254781091|r 196 KADFLIISSHKLGAPVG-AGALVFRED-ILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQK----RSSRV 269 (383)
Q Consensus 196 ~~D~~~~S~hK~~GP~G-~G~L~~r~~-~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~----~~~~~ 269 (383)
T Consensus 222 ~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~ne---a~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~ 298 (557)
T COG1982 222 GADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNE---ALMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEA 298 (557)
T ss_pred CCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7438981054421234366787508876577899999---9998806795589998899999875433478888889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC-----------------C-CCCEEEEEE--CCCCHHHHHHHHHHCCCEE-EECH
Q ss_conf 01233334444432100012232211-----------------0-365228985--7999999999987589699-8711
Q gi|254781091|r 270 FAIRDYLEQELKKLIPNIIIYGKDAE-----------------R-ISNTCCFSI--PFLKAEVLQIALDLEGIAV-SAGS 328 (383)
Q Consensus 270 ~~L~~~l~~~l~~~~~~~~i~~~~~~-----------------~-~~~i~~~~~--~~~~~~~v~~~l~~~gI~v-~~G~ 328 (383)
T Consensus 299 i~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~~- 376 (557)
T COG1982 299 IDFRKALRRLINE-IGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEETG- 376 (557)
T ss_pred HHHHHHHHHHHHH-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECC-
T ss_conf 9999999998876-48864026655577533222122344542036607999657789739999999997588145317-
Q ss_pred HHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3388643310146762888747659999078889999999999999
Q gi|254781091|r 329 ACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQ 374 (383)
Q Consensus 329 ~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~ 374 (383)
T Consensus 377 -------------------d~~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 377 -------------------DYSNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred -------------------CCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf -------------------732467863241067899999999987