HHsearch alignment for GI: 254781091 and conserved domain: COG1982

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.47  E-value=2.7e-12  Score=94.18  Aligned_cols=294  Identities=15%  Similarity=0.160  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC--CC-
Q ss_conf             999999999972989778988668538764455654421022456645873332122111222222222222222--22-
Q gi|254781091|r   47 IEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPV--LS-  123 (383)
Q Consensus        47 ~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~--~~-  123 (383)
T Consensus        72 i~eAqe~aA~~fgAd~t-yFvvNGTS~ank~vi~a~~------~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~  144 (557)
T COG1982          72 IKEAQELAARVFGADHT-YFVVNGTSTANKAVINAVL------TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPL  144 (557)
T ss_pred             HHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHHC------CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             88999999998688862-9997782289999998603------8999899658763788889987488327841777854


Q ss_pred             ---CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCC
Q ss_conf             ---2211102345532443113565326540343444333211235652034465334443233655-----44444334
Q gi|254781091|r  124 ---KGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAGR-----IPLSIEEI  195 (383)
Q Consensus       124 ---~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g~-----~~id~~~~  195 (383)
T Consensus       145 ~gi~ggI~~~~~~~al~~~~~~~--k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~  221 (557)
T COG1982         145 YGIIGGIPLETFKEALLAHPDAE--KLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG  221 (557)
T ss_pred             CCCCCCCCHHHHHHHHHHCHHHH--HEEEEECCC-CCEEEECHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCHHHHC
T ss_conf             46537869899879998471304--068896485-324760599999997531866888645774335555574114545


Q ss_pred             CCEEEEECCCCCCCCCC-CHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHH----HHHHH
Q ss_conf             31068730543322343-201101457-4201221224774212222222112221001221100100245----65321
Q gi|254781091|r  196 KADFLIISSHKLGAPVG-AGALVFRED-ILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQK----RSSRV  269 (383)
Q Consensus       196 ~~D~~~~S~hK~~GP~G-~G~L~~r~~-~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~----~~~~~  269 (383)
T Consensus       222 ~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~ne---a~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~  298 (557)
T COG1982         222 GADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNE---ALMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEA  298 (557)
T ss_pred             CCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7438981054421234366787508876577899999---9998806795589998899999875433478888889999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCC-----------------C-CCCEEEEEE--CCCCHHHHHHHHHHCCCEE-EECH
Q ss_conf             01233334444432100012232211-----------------0-365228985--7999999999987589699-8711
Q gi|254781091|r  270 FAIRDYLEQELKKLIPNIIIYGKDAE-----------------R-ISNTCCFSI--PFLKAEVLQIALDLEGIAV-SAGS  328 (383)
Q Consensus       270 ~~L~~~l~~~l~~~~~~~~i~~~~~~-----------------~-~~~i~~~~~--~~~~~~~v~~~l~~~gI~v-~~G~  328 (383)
T Consensus       299 i~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~~-  376 (557)
T COG1982         299 IDFRKALRRLINE-IGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEETG-  376 (557)
T ss_pred             HHHHHHHHHHHHH-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECC-
T ss_conf             9999999998876-48864026655577533222122344542036607999657789739999999997588145317-


Q ss_pred             HHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             3388643310146762888747659999078889999999999999
Q gi|254781091|r  329 ACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQ  374 (383)
Q Consensus       329 ~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~  374 (383)
T Consensus       377 -------------------d~~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         377 -------------------DYSNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             -------------------CCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             -------------------732467863241067899999999987