HHsearch alignment for GI: 254781091 and conserved domain: COG2008
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism].
Probab=99.90 E-value=1.7e-22 Score=155.98 Aligned_cols=319 Identities=19% Similarity=0.211 Sum_probs=196.4
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHH
Q ss_conf 01215788898989999999999642885236589999999999999999997298977898866853876445565442
Q gi|254781091|r 5 VYLDWNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFY 84 (383)
Q Consensus 5 iYlD~aattp~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~ 84 (383)
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~~~---~~~YG~----D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~~ 72 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANAVG---DDVYGE----DPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHCQ 72 (342)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCC---CCCCCC----CHHHHHHHHHHHHHHCC--CEEEEECCCCHHHHHHHHHHCC
T ss_conf 73555766787999999998552457---877788----88999999999998577--4499926843888999998648
Q ss_pred HCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCCCCCC-C-CCCCCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCC
Q ss_conf 10224566458733321221112--2222222222222-2-2222111023455324431--135653265403434443
Q gi|254781091|r 85 QGSHKISIDSLYISAIEHPAVYA--GGHFPSHKIHKIP-V-LSKGIVDIQALTDFLEQRN--STCGIPMIAVMFVNNETG 158 (383)
Q Consensus 85 ~~~~~~~~~~ii~s~~eH~s~~~--~~~~~~~~v~~v~-~-~~~g~i~~~~l~~~i~~~t--~~~~~~LVs~~~~~n~tG 158 (383)
T Consensus 73 ------~~~~vi~~~~aHi~~~E~Ga~~~~~~-~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~G 144 (342)
T COG2008 73 ------PGESVICHETAHIYTDECGAPEFFGG-GQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGG 144 (342)
T ss_pred ------CCCEEEEECCCCCEECCCCCHHHHCC-CCEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCC-CCC
T ss_conf ------99769985253120235675888738-8543047987787399999976367776558875079861367-786
Q ss_pred CCCC---HHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCC--CCEEEEECCCC-CCCCCCCHHHHCCCCCCCCCCC-
Q ss_conf 3321---12356520344653344432336---5544444334--31068730543-3223432011014574201221-
Q gi|254781091|r 159 VIQP---IKEIAQIVKEYQGILVVDAVQAA---GRIPLSIEEI--KADFLIISSHK-LGAPVGAGALVFREDILLPSPL- 228 (383)
Q Consensus 159 ~i~p---i~~I~~~~~~~g~~~~vD~aqa~---g~~~id~~~~--~~D~~~~S~hK-~~GP~G~G~L~~r~~~~~~~p~- 228 (383)
T Consensus 145 tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~g-Aiv~gn~~~~~~a~~~ 223 (342)
T COG2008 145 TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVG-AIVFGNRDFAKRARRW 223 (342)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCCHHHHHHHCCEEEEECCCCCCCEEE-EEEECCHHHHHHHHHH
T ss_conf 664899999999999980995440408898899873988899874288999913147752132-5897389999998999
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
Q ss_conf --224774212222222112221001221100100-24565321012333344444321000122322110365228985
Q gi|254781091|r 229 --LRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKD-IQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSI 305 (383)
Q Consensus 229 --~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~-~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~ 305 (383)
T Consensus 224 rK~~Ggl~~k~---r------~la-A~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~-~G~~~~~~~~---tN~vf~~l 289 (342)
T COG2008 224 RKRAGGLMRKA---R------FLA-AQGLYALEDDVWRLAADHANAMAARLAEGLEAK-PGVKLAFPVE---TNMVFVRL 289 (342)
T ss_pred HHHHCCCHHHH---H------HHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEECCCCC---CCEEEEEC
T ss_conf 99865627665---4------899-999999731588888788899999999765326-8943436776---62799977
Q ss_pred CCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCC-CCCC-EEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 799999999998758969987113388643310146762888-7476-59999078889999999999999999
Q gi|254781091|r 306 PFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFD-TSQG-AVRVSCGDSTTQEDIDIFLNALQKII 377 (383)
Q Consensus 306 ~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~-~~~g-~vRiS~~~~nT~~dId~l~~~L~~iv 377 (383)
T Consensus 290 ~~----~~i~~l~~~~~~~-----------~~-------~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 290 PE----SAIEALRLAGALF-----------YR-------GVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred CH----HHHHHHHHHCHHH-----------EE-------EEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 76----7889997515212-----------00-------12215777558998502499999999999999964