HHsearch alignment for GI: 254781091 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=98.68 E-value=1.4e-06 Score=59.62 Aligned_cols=326 Identities=22% Similarity=0.291 Sum_probs=169.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 57888989899999999996428852365899999999999999999972989778988668538764455654421022
Q gi|254781091|r 9 WNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSH 88 (383)
Q Consensus 9 ~aattp~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~ 88 (383)
T Consensus 54 DSGTgams~~qwaamm~GDEAYagsrs~~~L-----------~~avkdifGfq--~~iPthQGRgAE~Il~~i~ik~~-~ 119 (471)
T COG3033 54 DSGTGAMTDKQWAAMMRGDEAYAGSRSYYAL-----------ADAVKDIFGFQ--YTIPTHQGRGAENILIPILIKKG-E 119 (471)
T ss_pred CCCCCCCCHHHHHHHHCCCHHHCCCCCHHHH-----------HHHHHHHCCCE--EEEECCCCCCHHHHHHHHHHHHC-C
T ss_conf 5886625389999885253543155338999-----------99999861734--65125577317778899984103-2
Q ss_pred CCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCC----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC-
Q ss_conf 456645873332122-1112222222222222222----------2221110234553244311356532654034344-
Q gi|254781091|r 89 KISIDSLYISAIEHP-AVYAGGHFPSHKIHKIPVL----------SKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNE- 156 (383)
Q Consensus 89 ~~~~~~ii~s~~eH~-s~~~~~~~~~~~v~~v~~~----------~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~- 156 (383)
T Consensus 120 ~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~-nvp~I~~tiT~Nsa 198 (471)
T COG3033 120 QEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD-NVPYIVLTITNNSA 198 (471)
T ss_pred CCCCCCCCCCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEEEECCCC
T ss_conf 06774101234531202267787548702123166556645568877865799999999873714-58689999962666
Q ss_pred CCC---CCCHHHHHHHHCCCCCCCCCCCCCCC-----------CCCCCCCCCC------CCEEEEECCCC-CCCCCCCHH
Q ss_conf 433---32112356520344653344432336-----------5544444334------31068730543-322343201
Q gi|254781091|r 157 TGV---IQPIKEIAQIVKEYQGILVVDAVQAA-----------GRIPLSIEEI------KADFLIISSHK-LGAPVGAGA 215 (383)
Q Consensus 157 tG~---i~pi~~I~~~~~~~g~~~~vD~aqa~-----------g~~~id~~~~------~~D~~~~S~hK-~~GP~G~G~ 215 (383)
T Consensus 199 gGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gf 277 (471)
T COG3033 199 GGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GF 277 (471)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEECCC-CE
T ss_conf 78712077699999999871995896445665420223424765554609999999986512430202545242246-57
Q ss_pred HHCCCCCC----C--CC-CCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10145742----0--12-2122477421222222211222-----10012211001002456532101233334444432
Q gi|254781091|r 216 LVFREDIL----L--PS-PLLRGGDQEKGQRAGTENYAVI-----GGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKL 283 (383)
Q Consensus 216 L~~r~~~~----~--~~-p~~~Gg~~e~~~~~GT~~~~~i-----~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~ 283 (383)
T Consensus 278 l~~~D~~~fDvy~~~~~~~V~~---------eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~R-v~Qv~YL~~~l~~~ 346 (471)
T COG3033 278 LCFKDDSFFDVYEECRTLVVVQ---------EGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHR-VAQVQYLADGLEEA 346 (471)
T ss_pred EEECCCCHHHHHHHHHHHEEEE---------CCCCCCCCCCCHHHHHHHHHHHHHCC-CHHHHHH-HHHHHHHHHHHHHC
T ss_conf 8864750778999987665751---------26666576442328999978887427-0899999-99999999888865
Q ss_pred HHCCCCCCCCCCCCCCEEEEE-----EC-----CCCHHHHHHHH-HHCCCEE-EECHHHCCCCCCCCHHHHHCCCCCCC-
Q ss_conf 100012232211036522898-----57-----99999999998-7589699-87113388643310146762888747-
Q gi|254781091|r 284 IPNIIIYGKDAERISNTCCFS-----IP-----FLKAEVLQIAL-DLEGIAV-SAGSACSSGKIKKNHVLAAMGFDTSQ- 350 (383)
Q Consensus 284 ~~~~~i~~~~~~~~~~i~~~~-----~~-----~~~~~~v~~~l-~~~gI~v-~~G~~C~~~~~~~~~vl~~~g~~~~~- 350 (383)
T Consensus 347 --GVpi~~pa----GGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~-------------~~~rd~ktg 407 (471)
T COG3033 347 --GVPIVQPA----GGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSF-------------SLGRDPKTG 407 (471)
T ss_pred --CCEEEECC----CCCEEEEEHHHHCCCCCHHHCCHHHHHHHHHHHHCEEEEEEECE-------------ECCCCCCCC
T ss_conf --97368527----87169963456367788244847789999999838236642011-------------115587764
Q ss_pred -------CEEEEEECC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf -------659999078-889999999999999999862
Q gi|254781091|r 351 -------GAVRVSCGD-STTQEDIDIFLNALQKIIRTS 380 (383)
Q Consensus 351 -------g~vRiS~~~-~nT~~dId~l~~~L~~iv~~~ 380 (383)
T Consensus 408 ~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 408 KQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred CCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 34787123046743511145667999999999998542