HHsearch alignment for GI: 254781091 and conserved domain: COG3977
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].
Probab=98.18 E-value=0.00056 Score=43.83 Aligned_cols=226 Identities=17% Similarity=0.197 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC---HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCCE
Q ss_conf 1110234553244311356532654034344433321---12356520344653344432336554444433----4310
Q gi|254781091|r 126 IVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP---IKEIAQIVKEYQGILVVDAVQAAGRIPLSIEE----IKAD 198 (383)
Q Consensus 126 ~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p---i~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~----~~~D 198 (383)
T Consensus 168 ~vDF~~l~--i~e~-----~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~N 240 (417)
T COG3977 168 HVDFEHLH--IGES-----TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNEN 240 (417)
T ss_pred CCCHHHHC--CCCC-----EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECCCCCCCCCCC
T ss_conf 37788813--3676-----0269964788988773648899989987422389679735667997862003564156787
Q ss_pred -EEEECCCCCCCCC-CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCH-HHHHHHHHH-----
Q ss_conf -6873054332234-32011014574201221224774212222222112221001221100100-245653210-----
Q gi|254781091|r 199 -FLIISSHKLGAPV-GAGALVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKD-IQKRSSRVF----- 270 (383)
Q Consensus 199 -~~~~S~hK~~GP~-G~G~L~~r~~~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~-~~~~~~~~~----- 270 (383)
T Consensus 241 iilC~SLSK~GLPG~R~GIiIane~viqaitnmn~---iisL------ap~~~G~Aiaa~mie~gdl~rlseqVIrPFY~ 311 (417)
T COG3977 241 IILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNG---IISL------APGRMGPAIAAEMIESGDLLRLSEQVIRPFYR 311 (417)
T ss_pred EEEEEEHHHCCCCCCEEEEEECCHHHHHHHHHCCC---EEEE------CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 78883143348987303579626999999971145---3531------67875689999886024288899986438889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE-EEECC--CCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCC
Q ss_conf 12333344444321000122322110365228-98579--9999999998758969987113388643310146762888
Q gi|254781091|r 271 AIRDYLEQELKKLIPNIIIYGKDAERISNTCC-FSIPF--LKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFD 347 (383)
Q Consensus 271 ~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~-~~~~~--~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~ 347 (383)
T Consensus 312 ~~~q~~~~~l~~~lp~~~~~iHkpE--GAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~e--------wp 381 (417)
T COG3977 312 NRVQTTIAILRRYLPEYRCLIHKPE--GAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKE--------WP 381 (417)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCC--CCEEEHHHHCCCCCCHHHHHHHHHHCEEEEECCCCCCCCCCCC--------CC
T ss_conf 8899999999986577652542687--5154133553587668999999986868994463247899988--------87
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 74765999907888999999999999999986
Q gi|254781091|r 348 TSQGAVRVSCGDSTTQEDIDIFLNALQKIIRT 379 (383)
Q Consensus 348 ~~~g~vRiS~~~~nT~~dId~l~~~L~~iv~~ 379 (383)
T Consensus 382 H~hqC~Rmn~~~--~~e~ie~Gva~lae~ve~ 411 (417)
T COG3977 382 HTHQCMRMNYVP--EPEKIEKGVAILAEEVER 411 (417)
T ss_pred CCCCEEEEECCC--CHHHHHHHHHHHHHHHHH
T ss_conf 612247875369--879999999999999999