HHsearch alignment for GI: 254781091 and conserved domain: PRK03715
>PRK03715 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.76 E-value=1.6e-15 Score=113.68 Aligned_cols=332 Identities=18% Similarity=0.217 Sum_probs=182.2
Q ss_pred CEECCCCCC------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHH
Q ss_conf 001215788------89898999999999964288523658999999999999999999729897789886685387644
Q gi|254781091|r 4 RVYLDWNAT------APLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANW 77 (383)
Q Consensus 4 ~iYlD~aat------tp~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~ 77 (383)
T Consensus 36 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~Q~~~l~~~~~~~~----~~~~~~la~-~L~~~~--~~~~v~f~~sGsEAvE~ 108 (395)
T PRK03715 36 KRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFY----NEPMAKLAG-LLTQHS--CFDKVFFANSGAEANEG 108 (395)
T ss_pred CEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC----CHHHHHHHH-HHHCCC--CCCEEEEECCHHHHHHH
T ss_conf 99988231788777458969999999999975476773202----789999999-984155--88879981875889999
Q ss_pred HHHHHH-HHCCCCCCCCEEEECCCC-CCCCCCCCCCCCCCC---CCCCC----CCCCCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 556544-210224566458733321-221112222222222---22222----222211102345532443113565326
Q gi|254781091|r 78 VLTPHF-YQGSHKISIDSLYISAIE-HPAVYAGGHFPSHKI---HKIPV----LSKGIVDIQALTDFLEQRNSTCGIPMI 148 (383)
Q Consensus 78 ~i~~~~-~~~~~~~~~~~ii~s~~e-H~s~~~~~~~~~~~v---~~v~~----~~~g~i~~~~l~~~i~~~t~~~~~~LV 148 (383)
T Consensus 109 AlKlAr~y~~~~~~gr~~ii~~~~~yHG~T~~~~s~sg~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~aA-----v 183 (395)
T PRK03715 109 AIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVA-----V 183 (395)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE-----E
T ss_conf 99999998624689984599975788987402210468644455678988996755545589999734998079-----9
Q ss_pred EEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCC-CCCC----CCCCCCCCCEEEEECCCC-CCCCCCCHHHHC
Q ss_conf 54034344433321----1235652034465334443233-6554----444433431068730543-322343201101
Q gi|254781091|r 149 AVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRI----PLSIEEIKADFLIISSHK-LGAPVGAGALVF 218 (383)
Q Consensus 149 s~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa-~g~~----~id~~~~~~D~~~~S~hK-~~GP~G~G~L~~ 218 (383)
T Consensus 184 iiEPiqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~g--Kgl~gG~Pl~av~~ 261 (395)
T PRK03715 184 MLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELAGIEPDIMTLG--KGIGGGVPLAALLA 261 (395)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEC--CHHHCCCCEEEEEE
T ss_conf 9937888779852988999999999951897356201103888666853000489999989975--24428985289998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 45742012212247742122222221122210012211001002456532101233334444432100012232211036
Q gi|254781091|r 219 REDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERIS 298 (383)
Q Consensus 219 r~~~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~ 298 (383)
T Consensus 262 ~~~i~~~~~---g-~~-g~T~~g--npla~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i-~-~vRG~G 330 (395)
T PRK03715 262 KAEVAVFEA---G-DQ-GGTYNG--NPLMTAVGYAVISQLVA--PGFLEGVRARGEYLKEKLLELSAERGL-E-GERGEG 330 (395)
T ss_pred CHHHCCCCC---C-CC-CCCCCC--CHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCCC-E-EEEECC
T ss_conf 267424778---9-88-879899--71899999999999962--689999999999999999986503991-3-574355
Q ss_pred CEEEEEECCCCHHHH---HHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 522898579999999---99987589699871133886433101467628887476599990788899999999999999
Q gi|254781091|r 299 NTCCFSIPFLKAEVL---QIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQK 375 (383)
Q Consensus 299 ~i~~~~~~~~~~~~v---~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~ 375 (383)
T Consensus 331 l~~~iel~~~~~~~~~~~~~~~~~~gll~~~---------------------~~~n~irl~PpL~it~~eid~~~~~l~~ 389 (395)
T PRK03715 331 LLRALLLGKDIGPQIVEKARDMQPDGLLLNA---------------------PRPNLLRFMPALNVTTDEIDQMIAMLRS 389 (395)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEC---------------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999996788708999999999839989922---------------------8999899979943889999999999999
Q ss_pred HHHHHC
Q ss_conf 998623
Q gi|254781091|r 376 IIRTST 381 (383)
Q Consensus 376 iv~~~~ 381 (383)
T Consensus 390 aL~~la 395 (395)
T PRK03715 390 VLDKLA 395 (395)
T ss_pred HHHHHC
T ss_conf 999869