HHsearch alignment for GI: 254781091 and conserved domain: PRK04073

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional.
Probab=99.76  E-value=4.3e-16  Score=117.23  Aligned_cols=321  Identities=19%  Similarity=0.234  Sum_probs=186.2

Q ss_pred             CEECCCCCC------CCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHH
Q ss_conf             001215788------8989899999999996428852-365899999999999999999972989778988668538764
Q gi|254781091|r    4 RVYLDWNAT------APLLEVVRQSFVKSLDFYGNPS-SVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAAN   76 (383)
Q Consensus         4 ~iYlD~aat------tp~~~~v~~a~~~~~~~~~n~~-s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~   76 (383)
T Consensus        40 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~-----~~~-~~~~e~l~~l~~~--~~v~f~~sGseAvE  111 (396)
T PRK04073         40 NKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHS-----DQL-GPWYEKVAKLTGK--DMVLPMNTGAEAVE  111 (396)
T ss_pred             CEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC-----HHH-HHHHHHHHHHCCC--CEEEECCCHHHHHH
T ss_conf             999994517887630379799999999998417876653243-----478-9999999975283--64896187888999


Q ss_pred             HHHHHHH-H--HCCCCCCCC-EEEECCC-CCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             4556544-2--102245664-5873332-12211122222222------------2222222222211102345532443
Q gi|254781091|r   77 WVLTPHF-Y--QGSHKISID-SLYISAI-EHPAVYAGGHFPSH------------KIHKIPVLSKGIVDIQALTDFLEQR  139 (383)
Q Consensus        77 ~~i~~~~-~--~~~~~~~~~-~ii~s~~-eH~s~~~~~~~~~~------------~v~~v~~~~~g~i~~~~l~~~i~~~  139 (383)
T Consensus       112 ~AlklAr~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~~~~~  186 (396)
T PRK04073        112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEAEYKRGFGPMLPGIKKIPY-----GDVEALKAAITPN  186 (396)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCC-----CHHHHHHHHCCCC
T ss_conf             99999999987623788898779997775004532052226764334577899998232575-----2166788614897


Q ss_pred             HCCCCCCEEEEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCC-CCCC----CCCCCCCCCEEEEECCCC-CCC
Q ss_conf             11356532654034344433321----1235652034465334443233-6554----444433431068730543-322
Q gi|254781091|r  140 NSTCGIPMIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRI----PLSIEEIKADFLIISSHK-LGA  209 (383)
Q Consensus       140 t~~~~~~LVs~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa-~g~~----~id~~~~~~D~~~~S~hK-~~G  209 (383)
T Consensus       187 ~AA-----vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~g--K~l~g  259 (396)
T PRK04073        187 TAA-----FLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVKPDMYILG--KALGG  259 (396)
T ss_pred             EEE-----EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCEECCCCCCCCCCEECCCCCCCEEECC--CCCCC
T ss_conf             569-----99989877789778998999999999998399352663410788657630010046898801025--34557


Q ss_pred             C-CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             3-432011014574201221224774212222222112221001221100100245653210123333444443210001
Q gi|254781091|r  210 P-VGAGALVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNII  288 (383)
Q Consensus       210 P-~G~G~L~~r~~~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~  288 (383)
T Consensus       260 G~~P~~av~~~~~i~~~~---~~~~h~-~T~~g--npla~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l-~~-~  329 (396)
T PRK04073        260 GVFPISCVAANRDILGVF---TPGSHG-STFGG--NPLACAVSIAALDVIEE--EKLPERSLELGEYFKEQLKEI-DN-P  329 (396)
T ss_pred             CCCCEEEEECCHHHHHHC---CCCCCC-CCCCC--CHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHC-CC-C
T ss_conf             877605896078999616---689976-05488--98999999999999987--579999999999999999825-89-9


Q ss_pred             CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf             22322110365228985799999999998758969987113388643310146762888747659999078889999999
Q gi|254781091|r  289 IYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDI  368 (383)
Q Consensus       289 i~~~~~~~~~~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~  368 (383)
T Consensus       330 ~i~-~vRG~Gl~~giel~-~~~~~~~~~~~~~Gll~~~~---------------------~~~~ir~~PpL~it~~eid~  386 (396)
T PRK04073        330 MIK-EVRGRGLFIGVELN-EPARPYCEALKEEGLLCKET---------------------HETVIRFAPPLVISKEELDW  386 (396)
T ss_pred             CEE-ECCCCEEEEEEEEC-CCHHHHHHHHHHCCEEEEEC---------------------CCCEEEEECCCCCCHHHHHH
T ss_conf             748-72337799999958-75899999999499799527---------------------99989997993689999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254781091|r  369 FLNALQKII  377 (383)
Q Consensus       369 l~~~L~~iv  377 (383)
T Consensus       387 ~l~~l~~~L  395 (396)
T PRK04073        387 ALEKIKAVL  395 (396)
T ss_pred             HHHHHHHHH
T ss_conf             999999985