HHsearch alignment for GI: 254781091 and conserved domain: PRK04073
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional.
Probab=99.76 E-value=4.3e-16 Score=117.23 Aligned_cols=321 Identities=19% Similarity=0.234 Sum_probs=186.2
Q ss_pred CEECCCCCC------CCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHH
Q ss_conf 001215788------8989899999999996428852-365899999999999999999972989778988668538764
Q gi|254781091|r 4 RVYLDWNAT------APLLEVVRQSFVKSLDFYGNPS-SVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAAN 76 (383)
Q Consensus 4 ~iYlD~aat------tp~~~~v~~a~~~~~~~~~n~~-s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~ 76 (383)
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~-----~~~-~~~~e~l~~l~~~--~~v~f~~sGseAvE 111 (396)
T PRK04073 40 NKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHS-----DQL-GPWYEKVAKLTGK--DMVLPMNTGAEAVE 111 (396)
T ss_pred CEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC-----HHH-HHHHHHHHHHCCC--CEEEECCCHHHHHH
T ss_conf 999994517887630379799999999998417876653243-----478-9999999975283--64896187888999
Q ss_pred HHHHHHH-H--HCCCCCCCC-EEEECCC-CCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4556544-2--102245664-5873332-12211122222222------------2222222222211102345532443
Q gi|254781091|r 77 WVLTPHF-Y--QGSHKISID-SLYISAI-EHPAVYAGGHFPSH------------KIHKIPVLSKGIVDIQALTDFLEQR 139 (383)
Q Consensus 77 ~~i~~~~-~--~~~~~~~~~-~ii~s~~-eH~s~~~~~~~~~~------------~v~~v~~~~~g~i~~~~l~~~i~~~ 139 (383)
T Consensus 112 ~AlklAr~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~~~~~ 186 (396)
T PRK04073 112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEAEYKRGFGPMLPGIKKIPY-----GDVEALKAAITPN 186 (396)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCC-----CHHHHHHHHCCCC
T ss_conf 99999999987623788898779997775004532052226764334577899998232575-----2166788614897
Q ss_pred HCCCCCCEEEEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCC-CCCC----CCCCCCCCCEEEEECCCC-CCC
Q ss_conf 11356532654034344433321----1235652034465334443233-6554----444433431068730543-322
Q gi|254781091|r 140 NSTCGIPMIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQA-AGRI----PLSIEEIKADFLIISSHK-LGA 209 (383)
Q Consensus 140 t~~~~~~LVs~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa-~g~~----~id~~~~~~D~~~~S~hK-~~G 209 (383)
T Consensus 187 ~AA-----vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~g--K~l~g 259 (396)
T PRK04073 187 TAA-----FLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVKPDMYILG--KALGG 259 (396)
T ss_pred EEE-----EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCEECCCCCCCCCCEECCCCCCCEEECC--CCCCC
T ss_conf 569-----99989877789778998999999999998399352663410788657630010046898801025--34557
Q ss_pred C-CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3-432011014574201221224774212222222112221001221100100245653210123333444443210001
Q gi|254781091|r 210 P-VGAGALVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNII 288 (383)
Q Consensus 210 P-~G~G~L~~r~~~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~ 288 (383)
T Consensus 260 G~~P~~av~~~~~i~~~~---~~~~h~-~T~~g--npla~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l-~~-~ 329 (396)
T PRK04073 260 GVFPISCVAANRDILGVF---TPGSHG-STFGG--NPLACAVSIAALDVIEE--EKLPERSLELGEYFKEQLKEI-DN-P 329 (396)
T ss_pred CCCCEEEEECCHHHHHHC---CCCCCC-CCCCC--CHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHC-CC-C
T ss_conf 877605896078999616---689976-05488--98999999999999987--579999999999999999825-89-9
Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 22322110365228985799999999998758969987113388643310146762888747659999078889999999
Q gi|254781091|r 289 IYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDI 368 (383)
Q Consensus 289 i~~~~~~~~~~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~ 368 (383)
T Consensus 330 ~i~-~vRG~Gl~~giel~-~~~~~~~~~~~~~Gll~~~~---------------------~~~~ir~~PpL~it~~eid~ 386 (396)
T PRK04073 330 MIK-EVRGRGLFIGVELN-EPARPYCEALKEEGLLCKET---------------------HETVIRFAPPLVISKEELDW 386 (396)
T ss_pred CEE-ECCCCEEEEEEEEC-CCHHHHHHHHHHCCEEEEEC---------------------CCCEEEEECCCCCCHHHHHH
T ss_conf 748-72337799999958-75899999999499799527---------------------99989997993689999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781091|r 369 FLNALQKII 377 (383)
Q Consensus 369 l~~~L~~iv 377 (383)
T Consensus 387 ~l~~l~~~L 395 (396)
T PRK04073 387 ALEKIKAVL 395 (396)
T ss_pred HHHHHHHHH
T ss_conf 999999985