HHsearch alignment for GI: 254781091 and conserved domain: PRK13578
>PRK13578 ornithine decarboxylase; Provisional.
Probab=99.49 E-value=6.5e-12 Score=91.90 Aligned_cols=296 Identities=12% Similarity=0.114 Sum_probs=167.7
Q ss_pred HHHHHHHHHHCCCCHHHEEE-ECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCCCCCC--C
Q ss_conf 99999999972989778988-66853876445565442102245664587333212211122-22222222222222--2
Q gi|254781091|r 48 EESRRIIADFCGAKPDHVVF-TSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAG-GHFPSHKIHKIPVL--S 123 (383)
Q Consensus 48 e~aR~~ia~~~g~~~~ei~f-t~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~-~~~~~~~v~~v~~~--~ 123 (383)
T Consensus 177 ~eAq~~AA~~FGAD~T--yFvvNGTS~~nk~v~~a~~------~pGD~VLvdRN~HKSv~~GALIlsGA~PVYl~p~rN~ 248 (720)
T PRK13578 177 KDAQKHAAKVFNADKT--YFVLNGTSASNKVVTNALL------TPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNP 248 (720)
T ss_pred HHHHHHHHHHHCCCEE--EEEECCCHHHHHHHHHHHC------CCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 7999999998499826--9995771088999999745------8999999656435777778898669767996664675
Q ss_pred CCC---C-----CCHHHHHHHHHHH----CCCC-CCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CC
Q ss_conf 221---1-----1023455324431----1356-532654034344433321123565203446533444323365--54
Q gi|254781091|r 124 KGI---V-----DIQALTDFLEQRN----STCG-IPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG--RI 188 (383)
Q Consensus 124 ~g~---i-----~~~~l~~~i~~~t----~~~~-~~LVs~~~~~n~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g--~~ 188 (383)
T Consensus 249 ~GiiggI~~~~f~~~~i~~~I~~~~~~~a~~~~p~~~aVit~~-TYdGi~yn~~~I~~~i~~~~~~ilfDEAw~~~~~F~ 327 (720)
T PRK13578 249 FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAIIQLG-TYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFI 327 (720)
T ss_pred CCEECCCCHHHCCHHHHHHHHHHHCHHHHCCCCCCEEEEEECC-CCCCEEECHHHHHHHHHHHCCEEEEECCHHHHHHCC
T ss_conf 6511674857527577898887436333123488618999468-753542349999999864078389851102144328
Q ss_pred CC--C----CCCCCCE----EEEECCCCCCCCCC-CHHHHCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCC
Q ss_conf 44--4----4334310----68730543322343-20110145742012212247742122-------222221122210
Q gi|254781091|r 189 PL--S----IEEIKAD----FLIISSHKLGAPVG-AGALVFREDILLPSPLLRGGDQEKGQ-------RAGTENYAVIGG 250 (383)
Q Consensus 189 ~i--d----~~~~~~D----~~~~S~hK~~GP~G-~G~L~~r~~~~~~~p~~~Gg~~e~~~-------~~GT~~~~~i~~ 250 (383)
T Consensus 328 P~~~d~~p~~l~~gaddp~i~vtQStHK~LaafSQaS~IHvkd~hI~g~~r~v--~-~~rfn~a~mmh~STSPsY~L~AS 404 (720)
T PRK13578 328 PMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYC--P-HKRFNNAFMLHASTSPFYPLFAA 404 (720)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCHHHEEEECCCCCCCCCCCC--C-HHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 53112464333458777650466306555443222210122454346665667--8-89999999877078808999998
Q ss_pred HHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCC----------------------CCC------
Q ss_conf 0122110010-0245653210123333444443210001------2232----------------------211------
Q gi|254781091|r 251 FAVAAQQMVK-DIQKRSSRVFAIRDYLEQELKKLIPNII------IYGK----------------------DAE------ 295 (383)
Q Consensus 251 ~~~al~~~~~-~~~~~~~~~~~L~~~l~~~l~~~~~~~~------i~~~----------------------~~~------ 295 (383)
T Consensus 405 LDv~A~m~~g~~G~~L~~e~i~~aie~Rk~il~~~~~~k~~~p~~v~g~~~~~~~~e~l~~d~~~w~~~Pg~~WHGf~g~ 484 (720)
T PRK13578 405 LDVNAKMHEGESGRRLWMDCVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGY 484 (720)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCC
T ss_conf 79999997312145899999999999999998654442255752126860354888886125010246887422465555
Q ss_pred ------CCCCEEEEEEC------------CCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCC-CCEEEEE
Q ss_conf ------03652289857------------9999999999875896998711338864331014676288874-7659999
Q gi|254781091|r 296 ------RISNTCCFSIP------------FLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTS-QGAVRVS 356 (383)
Q Consensus 296 ------~~~~i~~~~~~------------~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~-~g~vRiS 356 (383)
T Consensus 485 ~~~~~~lDP~Klti~tPGi~~~~g~~~~~GIpA~il~~yLre~gIvvE----------------------ktdl~~ILfL 542 (720)
T PRK13578 485 AEDQYFVDPCKLLLTTPGIDAETGEYEDFGVPATILANYLRENGIVPE----------------------KCDLNSILFL 542 (720)
T ss_pred CCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE----------------------ECCCCEEEEE
T ss_conf 766342267379985367455665421368758999999987690798----------------------5477507999
Q ss_pred ECCCCCHHHHHHHHHHHHHHH
Q ss_conf 078889999999999999999
Q gi|254781091|r 357 CGDSTTQEDIDIFLNALQKII 377 (383)
Q Consensus 357 ~~~~nT~~dId~l~~~L~~iv 377 (383)
T Consensus 543 ~T~G~t~~k~~~Lv~aL~~fe 563 (720)
T PRK13578 543 LTPAEDMAKLQQLVAMLARFE 563 (720)
T ss_pred ECCCCCHHHHHHHHHHHHHHH
T ss_conf 726788899999999999999