HHsearch alignment for GI: 254781091 and conserved domain: TIGR00474

>TIGR00474 selA L-seryl-tRNA selenium transferase; InterPro: IPR004534 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homolog of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N-terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pyloriputative SelA.; GO: 0004125 L-seryl-tRNASec selenium transferase activity, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=99.36  E-value=4.6e-12  Score=92.78  Aligned_cols=220  Identities=18%  Similarity=0.277  Sum_probs=138.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHH-HHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf             888989899999999996428852-365899999-999999999999972989778988668538764455654421022
Q gi|254781091|r   11 ATAPLLEVVRQSFVKSLDFYGNPS-SVHKEGQKT-RLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSH   88 (383)
Q Consensus        11 attp~~~~v~~a~~~~~~~~~n~~-s~h~~~~~~-~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~   88 (383)
T Consensus        75 Gra~~ae~v~~a~~~~~~~~v~LEY~L~~~gRG~R~~~i---~~lLc~lTgae~~cvvnN-n-a~avlL~l~~~a-----  144 (448)
T TIGR00474        75 GRALFAEAVNEAISEAMRKYVNLEYDLDEGGRGHRDAHI---EKLLCKLTGAEDACVVNN-N-AAAVLLMLATLA-----  144 (448)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHH---HHHHHHHCCCCCCEEEEC-H-HHHHHHHHHHHC-----
T ss_conf             443679999999999862577531102115753178999---999875328623304423-3-899999999960-----


Q ss_pred             CCCCCEEEECCC---CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCC
Q ss_conf             456645873332---12211122---222222222222222221110234553244311356532654034344--4333
Q gi|254781091|r   89 KISIDSLYISAI---EHPAVYAG---GHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNE--TGVI  160 (383)
Q Consensus        89 ~~~~~~ii~s~~---eH~s~~~~---~~~~~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~--tG~i  160 (383)
T Consensus       145 --~GKeVi~srGEL~eiGg~fRipdim~~~g~~l~eVG--ttn~t~~~Dy~~ai~~nTa----~Lm-kvh~sNf~~~gft  215 (448)
T TIGR00474       145 --KGKEVIISRGELVEIGGAFRIPDIMKQAGCELDEVG--TTNRTHVKDYRVAITENTA----LLM-KVHLSNFKIVGFT  215 (448)
T ss_pred             --CCCEEEEECCCCCCCCCCCCCHHHHHHCCCEEEECC--CHHHHHHHHHHHHHHHHHH----HHH-HHHHCCCCEEEEC
T ss_conf             --798799978865789875654488965385651011--0120004467776531034----444-4430166256521


Q ss_pred             CC--HHHHHHHHCCCCCCCCCCCCCCC----CC--CCCC---CC---CCCCEEEEECCCC-CCCCCCCHHHHCCCCCCCC
Q ss_conf             21--12356520344653344432336----55--4444---43---3431068730543-3223432011014574201
Q gi|254781091|r  161 QP--IKEIAQIVKEYQGILVVDAVQAA----GR--IPLS---IE---EIKADFLIISSHK-LGAPVGAGALVFREDILLP  225 (383)
Q Consensus       161 ~p--i~~I~~~~~~~g~~~~vD~aqa~----g~--~~id---~~---~~~~D~~~~S~hK-~~GP~G~G~L~~r~~~~~~  225 (383)
T Consensus       216 ~~~~eeeLv~LG~~~~~pv~~D~gSG~LvdL~~~gL~~~eP~~~~~i~~G~dLVs~SgDKLLgGpq-aGiivGKKeli~k  294 (448)
T TIGR00474       216 AKVKEEELVKLGKELDVPVVTDLGSGLLVDLSQYGLPKNEPNVQEAIALGVDLVSFSGDKLLGGPQ-AGIIVGKKELIEK  294 (448)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCC-CCEEECCHHHHHH
T ss_conf             115778999732233770799877662122544166668897106886698578616510046765-0346230789999


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             ---2212247742122222221122210012211001
Q gi|254781091|r  226 ---SPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMV  259 (383)
Q Consensus       226 ---~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~  259 (383)
T Consensus       295 i~~~p~kr------~Lr~---dk~~LAGle~tLkly~  322 (448)
T TIGR00474       295 IQIHPLKR------ALRA---DKLTLAGLEATLKLYL  322 (448)
T ss_pred             HHHCCCCE------EHHC---CHHHHHHHHHHHHHHC
T ss_conf             85478622------1012---4167999999997415