>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.

Probab=97.34 E-value=0.00089 Score=42.61 Aligned_cols=325 Identities=19% Similarity=0.233 Sum_probs=164.8 Q ss_pred ECCCCCC------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-----C-CHHHEEEECCHHH Q ss_conf 1215788------89898999999999964288523658999999999999999999729-----8-9778988668538 Q gi|254781091|r 6 YLDWNAT------APLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCG-----A-KPDHVVFTSSATE 73 (383) Q Consensus 6 YlD~aat------tp~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g-----~-~~~ei~ft~~~T~ 73 (383) T Consensus 35 ~IDfa~gIavln~GhshP~vV~AV~~Q~~ef~-----Ht~f-~v~p--Ye~Yv~lAEkln~iaPgSg~kk~~ffnsGA-E 105 (427) T TIGR00700 35 YIDFAAGIAVLNVGHSHPKVVEAVKRQVEEFT-----HTAF-QVVP--YESYVELAEKLNAIAPGSGEKKAVFFNSGA-E 105 (427) T ss_pred EEHHCCCHHHHCCCCCCHHHHHHHHHHHHHHC-----CCCC-EEEC--CHHHHHHHHHHCCCCCCCCCHHEEEECCCH-H T ss_conf 10001102320368987358999999999743-----8853-4521--625899999971578897310002111543-7 Q ss_pred HHHHHHH-HHHHHCCCCCCCCEEEE-CCCCCCCCCCCCCCC--------CC-----CCCCCCCCC---CCC----CC--- Q ss_conf 7644556-54421022456645873-332122111222222--------22-----222222222---221----11--- Q gi|254781091|r 74 AANWVLT-PHFYQGSHKISIDSLYI-SAIEHPAVYAGGHFP--------SH-----KIHKIPVLS---KGI----VD--- 128 (383) Q Consensus 74 a~~~~i~-~~~~~~~~~~~~~~ii~-s~~eH~s~~~~~~~~--------~~-----~v~~v~~~~---~g~----i~--- 128 (383) T Consensus 106 AVENAVKIAR~yTgr-----pgVvaF~~gfHGRTnmTMalT~Kv~PYK~GFGPFapevY~aP~py~y~~~~~~~q~s~d~ 180 (427) T TIGR00700 106 AVENAVKIARKYTGR-----PGVVAFDRGFHGRTNMTMALTAKVKPYKIGFGPFAPEVYRAPYPYDYRDIALDKQESLDD 180 (427) T ss_pred HHHHHHHHHHHHCCC-----CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHH T ss_conf 888899999874589-----616863687466126788765227873457888674521168872002433442222003 Q ss_pred --CHHHHHHHHHH--HCCCCCCEEEEECCCCCCCCCCC----HHHHHHHHCCCCCCCCCCCCCCC----CC----CCCCC Q ss_conf --02345532443--11356532654034344433321----12356520344653344432336----55----44444 Q gi|254781091|r 129 --IQALTDFLEQR--NSTCGIPMIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQAA----GR----IPLSI 192 (383) Q Consensus 129 --~~~l~~~i~~~--t~~~~~~LVs~~~~~n~tG~i~p----i~~I~~~~~~~g~~~~vD~aqa~----g~----~~id~ 192 (383) T Consensus 181 m~~~A~~~~f~~dkqv~a~~vAa~v~EPvQGEGGFivp~k~fv~a~~~~C~ehgiVfiADEvQtGFARTG~~FA~eH~~~ 260 (427) T TIGR00700 181 MVLAAIEALFVADKQVEAENVAAVVIEPVQGEGGFIVPAKEFVAAVLDLCKEHGIVFIADEVQTGFARTGKLFAIEHYDD 260 (427) T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCEEEEECCC T ss_conf 89999998312103325010437897322478873338588999999975438758997254568000021125410067 Q ss_pred CCCCCEEEEECCCC-CC-C-CCCCHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHH Q ss_conf 33431068730543-32-2-3432011014574201-2212247742122222221122210012211001002456532 Q gi|254781091|r 193 EEIKADFLIISSHK-LG-A-PVGAGALVFREDILLP-SPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSR 268 (383) Q Consensus 193 ~~~~~D~~~~S~hK-~~-G-P~G~G~L~~r~~~~~~-~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~ 268 (383) T Consensus 261 dGl~PDLit~a--KslA~GlP--LSgV~GrAeimdApapGgLGG-----TyaG--nPlacAAAlAvl~iIe~--egL~ER 327 (427) T TIGR00700 261 DGLKPDLITVA--KSLADGLP--LSGVVGRAEIMDAPAPGGLGG-----TYAG--NPLACAAALAVLDIIEE--EGLIER 327 (427) T ss_pred CCCCCCHHHHH--HHHHCCCC--CCHHHCCHHHCCCCCCCCCCC-----CCCC--CHHHHHHHHHHHHHHCC--CCHHHH T ss_conf 88875188786--67735686--211104412116888888877-----5568--87999999999986311--312478 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC-C---CCH-----HHHHHHHHHCCCEEEECHHHCCCCCCCCH Q ss_conf 10123333444443210001223221103652289857-9---999-----99999987589699871133886433101 Q gi|254781091|r 269 VFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIP-F---LKA-----EVLQIALDLEGIAVSAGSACSSGKIKKNH 339 (383) Q Consensus 269 ~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~-~---~~~-----~~v~~~l~~~gI~v~~G~~C~~~~~~~~~ 339 (383) T Consensus 328 a~qig~~~~d~l~~~k~~~p~Ig-dvRglGaMiAvE~vkdp~T~EPda~~a~~ia~~A~a~Gll---------------- 390 (427) T TIGR00700 328 AEQIGKLVKDKLIELKEEVPAIG-DVRGLGAMIAVELVKDPDTTEPDAALAEKIAAAALAAGLL---------------- 390 (427) T ss_pred HHHHHHHHHHHHHHHHHHCCCHH-HHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHH---------------- T ss_conf 99987889888888876067211-1202633578886548878883179999999999756822---------------- Q ss_pred HHHHCCCCCCCCE-EEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 4676288874765-99990788899999999999999998 Q gi|254781091|r 340 VLAAMGFDTSQGA-VRVSCGDSTTQEDIDIFLNALQKIIR 378 (383) Q Consensus 340 vl~~~g~~~~~g~-vRiS~~~~nT~~dId~l~~~L~~iv~ 378 (383) T Consensus 391 -lLTcG~---~GNiIRfL~PLtI~D~ll~egl~Il~a~L~ 426 (427) T TIGR00700 391 -LLTCGI---YGNIIRFLTPLTISDELLDEGLDILEAALA 426 (427) T ss_pred -HHHCCH---HCCHHHHCCCCCCCHHHHHHHHHHHHHHHC T ss_conf -123030---115554348865467889889999999852

HHsearch alignment for GI: 254781091 and conserved domain: TIGR00700