HHsearch alignment for GI: 254781091 and conserved domain: TIGR01140
>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860 L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.43 E-value=5.1e-12 Score=92.56 Aligned_cols=314 Identities=22% Similarity=0.208 Sum_probs=199.6
Q ss_pred CCCCCC-CC--CCHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHH
Q ss_conf 215788-89--89899999999996---4288523658999999999999999999729897789886685387644556
Q gi|254781091|r 7 LDWNAT-AP--LLEVVRQSFVKSLD---FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLT 80 (383)
Q Consensus 7 lD~aat-tp--~~~~v~~a~~~~~~---~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~ 80 (383)
T Consensus 8 LDFsAninPlgpP~S~~aa~~~aLd~~~rYPD~------------dY~hlrqA~AdH~q~~~dwvl~gnG~~e~i~la~~ 75 (349)
T TIGR01140 8 LDFSANINPLGPPASVKAALAAALDALERYPDD------------DYIHLRQALADHHQVAADWVLAGNGELESIRLAAE 75 (349)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHH
T ss_conf 324345788887602045898742787608884------------31899999865412560125459972788899886
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC--CC-CC-CCCCH----HHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 54421022456645873332122111222222222222222--22-22-11102----3455324431135653265403
Q gi|254781091|r 81 PHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPV--LS-KG-IVDIQ----ALTDFLEQRNSTCGIPMIAVMF 152 (383)
Q Consensus 81 ~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~--~~-~g-~i~~~----~l~~~i~~~t~~~~~~LVs~~~ 152 (383)
T Consensus 76 t~~~------~Gd~~~V~~P~F~eYgR~~~~~Gae~~ti~w~~~~~~~W~~~~dPseiA~l~A~~s~h----~~li-lct 144 (349)
T TIGR01140 76 TLVS------RGDAVLVVAPAFAEYGRELELAGAELKTIRWSLDEADGWRVLRDPSEIALLDAVTSEH----DLLI-LCT 144 (349)
T ss_pred HCCC------CCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCC----CEEE-EEC
T ss_conf 1478------8875787088702679999856981223457731688874557645665412688331----3531-117
Q ss_pred CCCCCCCCCC---HHHHHHHHCCCCCCCCCCCCCCCCCCC--------CCCCCCCCEEEEECCCCCCCCCCC--HHHHCC
Q ss_conf 4344433321---123565203446533444323365544--------444334310687305433223432--011014
Q gi|254781091|r 153 VNNETGVIQP---IKEIAQIVKEYQGILVVDAVQAAGRIP--------LSIEEIKADFLIISSHKLGAPVGA--GALVFR 219 (383)
Q Consensus 153 ~~n~tG~i~p---i~~I~~~~~~~g~~~~vD~aqa~g~~~--------id~~~~~~D~~~~S~hK~~GP~G~--G~L~~r 219 (383)
T Consensus 145 PnNPtG~l~~r~~l~A~a~rc~~~N~~LllDEA-F~dF~pPG~E~~l~p~l~~~P~~~vlRSLTKfy~lPGLRlGylva~ 223 (349)
T TIGR01140 145 PNNPTGDLLERDALRALADRCKAVNIELLLDEA-FLDFLPPGEETSLVPSLKDTPNVVVLRSLTKFYALPGLRLGYLVAV 223 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHCCHHHHHHHHHCC
T ss_conf 676989862247899999888874046666556-5157898644343413326897899711155402502445455516
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 57-42012212247742122222221122210012211001002456532101233334444432100012232211036
Q gi|254781091|r 220 ED-ILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERIS 298 (383)
Q Consensus 220 ~~-~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~ 298 (383)
T Consensus 224 ~Da~la~~r~--------~r~pW~vnalAaaag~~al~-~sef~q~tw~wl~~erar~~qaL~~l-P~l~v~Ps~an--- 290 (349)
T TIGR01140 224 DDALLARLRA--------ARRPWSVNALAAAAGAAALR-DSEFRQETWRWLAEERARLRQALADL-PLLDVYPSRAN--- 290 (349)
T ss_pred CHHHHHHHHH--------HCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCC---
T ss_conf 6178999997--------42899877689999999876-67899999874366778999999717-88755888876---
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 522898579999999999875896998711338864331014676288874765999907888999999999999999
Q gi|254781091|r 299 NTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKI 376 (383)
Q Consensus 299 ~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~i 376 (383)
T Consensus 291 -fLLl~~~~~~~dl~~~llt~~~IliRd---c~~---fp-------gLds--~~~RVAvR---t~a~N~rLlaALa~v 349 (349)
T TIGR01140 291 -FLLLKVEREDVDLQEELLTKERILIRD---CLS---FP-------GLDS--DYYRVAVR---TAAENDRLLAALADV 349 (349)
T ss_pred -CEEEECCCCCHHHHHHHHHHCCCCHHH---CCC---CC-------CCCC--CEEEEEEC---CHHHHHHHHHHHHCC
T ss_conf -114545898688999998743410012---057---88-------8887--52788852---855478999996139