HHsearch alignment for GI: 254781091 and conserved domain: TIGR01976

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein; InterPro: IPR011340 This entry describes probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. The most closely related characterised proteins are active as cysteine desulphurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown..
Probab=100.00  E-value=0  Score=489.81  Aligned_cols=355  Identities=23%  Similarity=0.310  Sum_probs=313.2

Q ss_pred             CCEECCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHH-HHHHHHHHHHHHHHHHHCCCCH-HHEEEECCHHHHHHHHH
Q ss_conf             700121578889898999999999964-28852365899-9999999999999999729897-78988668538764455
Q gi|254781091|r    3 KRVYLDWNATAPLLEVVRQSFVKSLDF-YGNPSSVHKEG-QKTRLYIEESRRIIADFCGAKP-DHVVFTSSATEAANWVL   79 (383)
Q Consensus         3 ~~iYlD~aattp~~~~v~~a~~~~~~~-~~n~~s~h~~~-~~~~~~~e~aR~~ia~~~g~~~-~ei~ft~~~T~a~~~~i   79 (383)
T Consensus        21 ~~~~~DnpAG~q~Pq~V~dAv~~~L~~~~A~~gg~~~~~G~~~~~~vd~AR~a~A~LlnA~~Pe~vv~G~~~T~L~~~ls  100 (410)
T TIGR01976        21 DVVFFDNPAGTQIPQSVLDAVSAALTRSNANRGGAYESSGRKADQVVDDAREAVADLLNAESPEEVVFGANATSLAYLLS  100 (410)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHH
T ss_conf             36897578888777347999999987413013767766306899999999999999726798885676786689999999


Q ss_pred             HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC----CCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             654421022456645873332122111222222----22222222222-2211102345532443113565326540343
Q gi|254781091|r   80 TPHFYQGSHKISIDSLYISAIEHPAVYAGGHFP----SHKIHKIPVLS-KGIVDIQALTDFLEQRNSTCGIPMIAVMFVN  154 (383)
Q Consensus        80 ~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~----~~~v~~v~~~~-~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~  154 (383)
T Consensus       101 ~a~---~~~~~~GDEvivt~LDHeaNispW~~~a~~~Ga~Vkw~~~d~~~~~L~~~~L~~Lls~rTR-----LVAvt~AS  172 (410)
T TIGR01976       101 RAL---SRRWGPGDEVIVTRLDHEANISPWLQAAEDAGAKVKWARVDEADGELHPDDLASLLSPRTR-----LVAVTAAS  172 (410)
T ss_pred             HHH---HHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCCCHH-----HHHHHHHH
T ss_conf             998---5126898558971676600136899999838978999633623154486998236688225-----55623440


Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCC----C
Q ss_conf             444333211235652034465334443233655444443343106873054332234320110145742012212----2
Q gi|254781091|r  155 NETGVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLL----R  230 (383)
Q Consensus       155 n~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~~~~p~~----~  230 (383)
T Consensus       173 n~~Gs~~dl~A~~~~vh~aGA~v~VDaVhyaPH~L~Dvqa~gaD~l~cSaYK~fGPH-~G~l~~R~~~~~~l~~~k~~~~  251 (410)
T TIGR01976       173 NLLGSIVDLAALTELVHAAGALVYVDAVHYAPHGLIDVQALGADFLVCSAYKFFGPH-LGILWGRPELLKSLPPYKLEFS  251 (410)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEECHHHHCCCCCCCHHHHCCCEEEECCEECCCCC-EEEEEECHHHHCCCCCCCCCCC
T ss_conf             232551158899999987598798811100456664134227887998563116885-0178711466404687633677


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             47742122222221122210012211001-------------------00245653210123333444443210001223
Q gi|254781091|r  231 GGDQEKGQRAGTENYAVIGGFAVAAQQMV-------------------KDIQKRSSRVFAIRDYLEQELKKLIPNIIIYG  291 (383)
Q Consensus       231 Gg~~e~~~~~GT~~~~~i~~~~~al~~~~-------------------~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~  291 (383)
T Consensus       252 ~d~~P~r~E~GT~~yEllAG~~AavdYLa~lg~nlA~~~~gsrR~~lv~sf~~~~ayE~~l~~~Ll~~L~~~-P~~t~yG  330 (410)
T TIGR01976       252 EDTGPERFELGTLQYELLAGVVAAVDYLAGLGRNLAASANGSRRERLVASFEAIEAYENRLAERLLAGLSDL-PGVTVYG  330 (410)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEC
T ss_conf             888885145145560267899999999998232106898865589999999999999999999999998748-9569973


Q ss_pred             CC----CCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf             22----11036522898579999999999875896998711338864331014676288874765999907888999999
Q gi|254781091|r  292 KD----AERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDID  367 (383)
Q Consensus       292 ~~----~~~~~~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId  367 (383)
T Consensus       331 ~~d~~R~~~RvPTv~F~v~~~~P~~~~~~La~~~v~~~~GH------fYA~~~~~~LGl~~~~GvvR~gLaHY~t~eevd  404 (410)
T TIGR01976       331 VQDEKRLAERVPTVAFTVAGLSPQRVVRRLADQGVDVWAGH------FYAVRLLRRLGLEADGGVVRVGLAHYNTAEEVD  404 (410)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEECCC------CHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH
T ss_conf             55786464259758897278787999999853686331264------116899986589898873898525779889999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254781091|r  368 IFLNAL  373 (383)
Q Consensus       368 ~l~~~L  373 (383)
T Consensus       405 ~l~~aL  410 (410)
T TIGR01976       405 RLLEAL  410 (410)
T ss_pred             HHHHCC
T ss_conf             998509