HHsearch alignment for GI: 254781091 and conserved domain: TIGR01976
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein; InterPro: IPR011340 This entry describes probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. The most closely related characterised proteins are active as cysteine desulphurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown..
Probab=100.00 E-value=0 Score=489.81 Aligned_cols=355 Identities=23% Similarity=0.310 Sum_probs=313.2
Q ss_pred CCEECCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHH-HHHHHHHHHHHHHHHHHCCCCH-HHEEEECCHHHHHHHHH
Q ss_conf 700121578889898999999999964-28852365899-9999999999999999729897-78988668538764455
Q gi|254781091|r 3 KRVYLDWNATAPLLEVVRQSFVKSLDF-YGNPSSVHKEG-QKTRLYIEESRRIIADFCGAKP-DHVVFTSSATEAANWVL 79 (383)
Q Consensus 3 ~~iYlD~aattp~~~~v~~a~~~~~~~-~~n~~s~h~~~-~~~~~~~e~aR~~ia~~~g~~~-~ei~ft~~~T~a~~~~i 79 (383)
T Consensus 21 ~~~~~DnpAG~q~Pq~V~dAv~~~L~~~~A~~gg~~~~~G~~~~~~vd~AR~a~A~LlnA~~Pe~vv~G~~~T~L~~~ls 100 (410)
T TIGR01976 21 DVVFFDNPAGTQIPQSVLDAVSAALTRSNANRGGAYESSGRKADQVVDDAREAVADLLNAESPEEVVFGANATSLAYLLS 100 (410)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHH
T ss_conf 36897578888777347999999987413013767766306899999999999999726798885676786689999999
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC----CCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 654421022456645873332122111222222----22222222222-2211102345532443113565326540343
Q gi|254781091|r 80 TPHFYQGSHKISIDSLYISAIEHPAVYAGGHFP----SHKIHKIPVLS-KGIVDIQALTDFLEQRNSTCGIPMIAVMFVN 154 (383)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~----~~~v~~v~~~~-~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~ 154 (383)
T Consensus 101 ~a~---~~~~~~GDEvivt~LDHeaNispW~~~a~~~Ga~Vkw~~~d~~~~~L~~~~L~~Lls~rTR-----LVAvt~AS 172 (410)
T TIGR01976 101 RAL---SRRWGPGDEVIVTRLDHEANISPWLQAAEDAGAKVKWARVDEADGELHPDDLASLLSPRTR-----LVAVTAAS 172 (410)
T ss_pred HHH---HHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCCCHH-----HHHHHHHH
T ss_conf 998---5126898558971676600136899999838978999633623154486998236688225-----55623440
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCC----C
Q ss_conf 444333211235652034465334443233655444443343106873054332234320110145742012212----2
Q gi|254781091|r 155 NETGVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLL----R 230 (383)
Q Consensus 155 n~tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~~~~p~~----~ 230 (383)
T Consensus 173 n~~Gs~~dl~A~~~~vh~aGA~v~VDaVhyaPH~L~Dvqa~gaD~l~cSaYK~fGPH-~G~l~~R~~~~~~l~~~k~~~~ 251 (410)
T TIGR01976 173 NLLGSIVDLAALTELVHAAGALVYVDAVHYAPHGLIDVQALGADFLVCSAYKFFGPH-LGILWGRPELLKSLPPYKLEFS 251 (410)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECHHHHCCCCCCCHHHHCCCEEEECCEECCCCC-EEEEEECHHHHCCCCCCCCCCC
T ss_conf 232551158899999987598798811100456664134227887998563116885-0178711466404687633677
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 47742122222221122210012211001-------------------00245653210123333444443210001223
Q gi|254781091|r 231 GGDQEKGQRAGTENYAVIGGFAVAAQQMV-------------------KDIQKRSSRVFAIRDYLEQELKKLIPNIIIYG 291 (383)
Q Consensus 231 Gg~~e~~~~~GT~~~~~i~~~~~al~~~~-------------------~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~ 291 (383)
T Consensus 252 ~d~~P~r~E~GT~~yEllAG~~AavdYLa~lg~nlA~~~~gsrR~~lv~sf~~~~ayE~~l~~~Ll~~L~~~-P~~t~yG 330 (410)
T TIGR01976 252 EDTGPERFELGTLQYELLAGVVAAVDYLAGLGRNLAASANGSRRERLVASFEAIEAYENRLAERLLAGLSDL-PGVTVYG 330 (410)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEC
T ss_conf 888885145145560267899999999998232106898865589999999999999999999999998748-9569973
Q ss_pred CC----CCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 22----11036522898579999999999875896998711338864331014676288874765999907888999999
Q gi|254781091|r 292 KD----AERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDID 367 (383)
Q Consensus 292 ~~----~~~~~~i~~~~~~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId 367 (383)
T Consensus 331 ~~d~~R~~~RvPTv~F~v~~~~P~~~~~~La~~~v~~~~GH------fYA~~~~~~LGl~~~~GvvR~gLaHY~t~eevd 404 (410)
T TIGR01976 331 VQDEKRLAERVPTVAFTVAGLSPQRVVRRLADQGVDVWAGH------FYAVRLLRRLGLEADGGVVRVGLAHYNTAEEVD 404 (410)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEECCC------CHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 55786464259758897278787999999853686331264------116899986589898873898525779889999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781091|r 368 IFLNAL 373 (383)
Q Consensus 368 ~l~~~L 373 (383)
T Consensus 405 ~l~~aL 410 (410)
T TIGR01976 405 RLLEAL 410 (410)
T ss_pred HHHHCC
T ss_conf 998509